FlyBase Gene Report: Dmel\verm

General Information

Symbol

Dmel\verm

Species

D. melanogaster

Name

vermiform

Annotation Symbol

CG8756

Feature Type

protein_coding_gene

FlyBase ID

FBgn0261341

Gene Model Status

Stock Availability

9 publicly available

Gene Snapshot

vermiform (verm) encodes a chitin deacetylase-like protein that is secreted by tracheal cells and accumulates in the embryonic tracheal lumen. Its functions include cuticle development and tracheal tube size control. [Date last reviewed: 2019-03-21]

Other Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

N63, LCBP1, hlm, helmsman, l(3)76BDx

Key Links

Genomic Location

Cytogenetic map

Sequence location

3L:19,690,033..19,695,260 [-]

Recombination map

3-46

RefSeq locus

NT_037436 REGION:19690033..19695260

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (15 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables chitin binding

inferred from electronic annotation with InterPro:IPR002557, InterPro:IPR036508

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

NOT enables chitin deacetylase activity

inferred from key residues

(Dixit et al., 2008)

Biological Process (10 terms)

Terms Based on Experimental Evidence (8 terms)

CV Term

Evidence

References

involved_in adult chitin-based cuticle development

inferred from mutant phenotype

(Zhang et al., 2019)

involved_in chitin-based cuticle development

inferred from mutant phenotype

(Luschnig et al., 2006)

involved_in dorsal trunk growth, open tracheal system

inferred from mutant phenotype

(McKay et al., 2008)

involved_in larval chitin-based cuticle development

inferred from mutant phenotype

(Pesch et al., 2015)

involved_in open tracheal system development

inferred from mutant phenotype

(Luschnig et al., 2006, Wang et al., 2006)

involved_in regulation of tube length, open tracheal system

inferred from mutant phenotype

(Luschnig et al., 2006, Wang et al., 2006)

involved_in trachea morphogenesis

inferred from mutant phenotype

(McKay et al., 2008)

involved_in visual behavior

inferred from mutant phenotype

(McKay et al., 2008)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in carbohydrate metabolic process

inferred from electronic annotation with InterPro:IPR002509, InterPro:IPR011330

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

involved_in chitin metabolic process

inferred from electronic annotation with InterPro:IPR002557, InterPro:IPR036508

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

Cellular Component (3 terms)

Terms Based on Experimental Evidence (3 terms)

CV Term

Evidence

References

located_in cell surface

inferred from direct assay

(Pesch et al., 2015)

located_in chitin-based extracellular matrix

inferred from direct assay

(Pesch et al., 2015, Petkau et al., 2012, Luschnig et al., 2006)

located_in extracellular region

inferred from direct assay

(Wang et al., 2006)

Terms Based on Predictions or Assertions (0 terms)

Gene Group (FlyBase)

CHITIN DEACETYLASE-LIKE FAMILY

CHITIN BINDING DOMAIN-CONTAINING PROTEINS

Protein Family (UniProt)

-

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

CHITIN DEACETYLASE-LIKE FAMILY -: Chitin deacetylases are secreted enzymes that deacetylate chitin to chitosan. Several members of the chitin deacetylase-like family are thought to be catalytically inactive and may provide a structural role by binding cuticular chitin. (Adapted from FBrf0204376.)
CHITIN BINDING DOMAIN-CONTAINING PROTEINS -: Chitin binding domains are found in certain classes of chitin binding proteins and chitin-active enzymes. (Adapted from FBrf0108362.)

Summary (Interactive Fly)

secreted polysaccharide deacetylases - converts chitin to chitosan - required to assemble cable-like extracellular matrix and restrict tracheal tube elongation

Interactive Fly

Gene Model and Products

Number of Transcripts

3

Number of Unique Polypeptides

3

Please see the JBrowse view of Dmel\verm for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.51

Gene model reviewed during 5.45

Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Gene model reviewed during 5.55

Sequence Ontology: Class of Gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

FBtr0302335

2165

525

FBtr0345144

2183

531

FBtr0345145

2255

555

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

FBpp0291540

59.6

525

4.83

FBpp0311365

60.2

531

4.74

FBpp0311366

63.1

555

4.81

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\verm using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

verm_1

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage

epithelial cell

• cytoplasm

Comment: excluded from blastoderm layer

(Lecuyer et al., 2007)

• cytoplasm

Comment: excluded from blastoderm layer

(Lecuyer et al., 2007)

embryonic stage 11 -- 13

presumptive embryonic/larval tracheal system

(McKay et al., 2008)

prepupal stage P4

Comment: 12h APF

(McKay et al., 2008)

pharate adult stage P9

Comment: 65h APF

(McKay et al., 2008)

(McKay et al., 2008)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

eye photoreceptor cell

(McKay et al., 2008)

retina | restricted

(McKay et al., 2008)

lamina | restricted

(McKay et al., 2008)

embryonic stage 15 -- 17

(Massarwa et al., 2009)

embryonic stage 16

(Dong et al., 2013, Förster and Luschnig, 2012)

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

• membrane

(Aradska et al., 2015)

western blot

Stage

Tissue/Position (including subcellular localization)

Reference

(McKay et al., 2008)

Additional Descriptive Data

verm protein is secreted into the tracheal lumen.

(Massarwa et al., 2009)

verm is detected on the surface of photoreceptors in the adult retina.

(McKay et al., 2008)

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in cell surface

inferred from direct assay

(Pesch et al., 2015)

located_in chitin-based extracellular matrix

inferred from direct assay

(Pesch et al., 2015, Petkau et al., 2012, Luschnig et al., 2006)

located_in extracellular region

inferred from direct assay

(Wang et al., 2006)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\verm in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\verm

View exonic expression by tissue for Dmel\verm

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0261341

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG8756

Flygut - An atlas of the Drosophila adult midgut

FBgn0261341

Images

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 4 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 10 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of verm

Transgenic constructs containing regulatory region of verm

Deletions and Duplications ( 27 )

Not disrupted in

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal - all die before end of embryonic stage

verm^KG07819

lethal - all die before end of pupal stage, with Scer\GAL4^pnr-MD237

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

viable, with Scer\GAL4^Mef2.PR

Other Phenotypes

Allele

some die during embryonic stage

verm^KG07819

some die during pupal stage, with Scer\GAL4^pnr-MD237

visual behavior defective | adult stage | heat sensitive

verm^a.hs.PM

Phenotype manifest in

Allele

verm^KG07819

cuticle | embryonic stage 16

verm^KG07819

dorsal trunk primordium | heat sensitive

verm^a.hs.PM

embryonic/first instar larval cuticle

verm^KG07819

embryonic/larval dorsal trunk

verm^KG07819

embryonic/larval dorsal trunk | embryonic stage 16

verm^KG07819

embryonic/larval trachea

verm^KG07819

embryonic/larval tracheal system

verm^KG07819

embryonic/larval tracheal system, with Scer\GAL4^btl.PS

tracheal branch primordium | heat sensitive

verm^a.hs.PM

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (0)

No records found.

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (0)

No records found.

Rattus norvegicus (Norway rat) (0)

No records found.

Xenopus tropicalis (Western clawed frog) (0)

No records found.

Danio rerio (Zebrafish) (0)

No records found.

Caenorhabditis elegans (Nematode, roundworm) (2)

5 of 15

Yes

Yes

3 of 15

No

Yes

Arabidopsis thaliana (thale-cress) (0)

No records found.

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG091904GV )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila suzukii

Spotted wing Drosophila

Dsuz\DS10_00013076

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila yakuba

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Drosophila persimilis

Drosophila willistoni

Drosophila virilis

Drosophila mojavensis

Drosophila grimshawi

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091503C1 )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Glossina morsitans

Tsetse fly

Gmor\GMOY001108

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_05722

Mayetiola destructor

Hessian fly

Mdes\Mdes001093

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL003425

Anopheles darlingi

American malaria mosquito

Adar\ADAC000423

Anopheles gambiae

Malaria mosquito

Agam\AGAP011937

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ008266

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W02ND )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA006214

Bombyx mori

Silkmoth

Bmor\BGIBMGA006213

Danaus plexippus

Monarch butterfly

Dple\DPOGS214167-PA

Danaus plexippus

Monarch butterfly

Dple\DPOGS214168-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL006811

Apis florea

Little honeybee

Aflo\3634398132

Apis florea

Little honeybee

Aflo\2342674308

Apis mellifera

Western honey bee

Apis mellifera

Western honey bee

Bombus impatiens

Common eastern bumble bee

Bombus impatiens

Common eastern bumble bee

Bombus terrestris

Buff-tailed bumblebee

Bombus terrestris

Buff-tailed bumblebee

Linepithema humile

Argentine ant

Linepithema humile

Argentine ant

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:002891

Megachile rotundata

Alfalfa leafcutting bee

Mrot\MROTU:002890

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG014030

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG014029

Dendroctonus ponderosae

Mountain pine beetle

Dendroctonus ponderosae

Mountain pine beetle

Dendroctonus ponderosae

Mountain pine beetle

Tribolium castaneum

Red flour beetle

Tribolium castaneum

Red flour beetle

Pediculus humanus

Human body louse

Phum\PHUM148860

Rhodnius prolixus

Kissing bug

Rhodnius prolixus

Kissing bug

Cimex lectularius

Bed bug

Clec\CLEC010656

Cimex lectularius

Bed bug

Clec\CLEC010653

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI000227

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI001932

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI088287

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_11616

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_11617

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X02KK )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strigamia maritima

European centipede

Smar\SMAR006433

Strigamia maritima

European centipede

Smar\SMAR001895

Ixodes scapularis

Black-legged tick

Isca\ISCW013286

Stegodyphus mimosarum

African social velvet spider

Smim\KFM76711.1

Stegodyphus mimosarum

African social velvet spider

Smim\KFM65820.1

Tetranychus urticae

Two-spotted spider mite

Turt\tetur05g05750

Tetranychus urticae

Two-spotted spider mite

Turt\tetur11g04260

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_327753

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_309273

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G01IQ )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Hypp_1529

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_023038gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\Sp-Prtelsn

Ciona intestinalis

Vase tunicate

Cint\ENSCING00000009631

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v8.0)

Drosophila melanogaster (Fruit fly) (5)

Gene Symbol

Score

Source

Alignment

3 of 10

2 of 10

2 of 10

2 of 10

2 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

esyN Network Key:

Suppression

Enhancement

View in Interactions Browser

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

enhanceable

(Luschnig et al., 2006)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

enhanceable

(Luschnig et al., 2006)

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

65419

DroID - A comprehensive database of gene and protein interactions.

FBgn0261341

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

40149

MIST (protein-protein) - An integrated Molecular Interaction Database

verm

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

3L

Recombination map

3-46

Cytogenetic map

Sequence location

3L:19,690,033..19,695,260 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

76C1-76C1

Left limit from in situ hybridisation (FBrf0080573) Right limit from in situ hybridisation (FBrf0080573)

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

76C2-76C3

(Pollock, 1998.3.10, McKay et al., 1996)

76C2-76C3

(determined by in situ hybridisation)

(McKay, 1995)

76C-76C

(determined by in situ hybridisation)

(McKay and Pollock, 1995)

Experimentally Determined Recombination Data

Location

3-46

(FlyBase, 2016)

3-43.1

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (9)

86530

w^*; P{UAS-verm.RFP}36-2

86531

w^*; P{UAS-verm.RFP}mbc^32-2

57188

y¹ sc^* v¹ sev²¹; P{TRiP.HMC04570}attP40

14660

y¹; P{SUPor-P}verm^KG07819 ry⁵⁰⁶/TM3, Sb¹ Ser¹

26177

verm^76BDx-6 red¹ e⁴/TM6B, Sb¹ Tb¹ ca¹

v109518

P{KK111195}VIE-260B

v15464

w¹¹¹⁸; P{GD6045}v15464

v15465

w¹¹¹⁸; P{GD6045}v15465

v47128

w¹¹¹⁸; P{GD16311}v47128

Genomic Clones (14)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (115)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

DPiM_LD36620

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0261341

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0261341

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

40149

Antibody Information

Laboratory Generated Antibodies

polyclonal

(McKay et al., 2008)

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for identity of: verm LCBP1

(Wang et al., 2006)

Source for identity of: LCBP1 CG8756

(Wang et al., 2005)

Source for database merge of

Source for merge of: verm hlm

(McKay et al., 2008)

Additional comments

Other Comments

Identification: By virtue of its expression in the fruit fly retina during visual system neural network development. Embryonic expression of anti-sense hlm RNA arrests outgrowth and branching in the developing trachea. Expression of anti-sense hlm RNA during visual system formation results in reduced visual acuity as assayed by the optomotor response, indicative of an abnormal neural network.

(Pollock et al., 1998)

Identified in a subtractive hybridization screen for genes expressed in the adult nervous system.

(McKay and Pollock, 1995)

Origin and Etymology

Discoverer

Etymology

Named "vermiform" based on the tracheal phenotypes of the mutants.

(Wang et al., 2006)

Identification

External Crossreferences and Linkouts ( 51 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

40149

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0261341

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

verm_1

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG8756

Flygut - An atlas of the Drosophila adult midgut

FBgn0261341

FlyMine - An integrated database for Drosophila genomics

FBgn0261341

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

40149

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG8756

modMine - A data warehouse for the modENCODE project

FBgn0261341

Linkouts

BioGRID - A database of protein and genetic interactions.

65419

DPiM - Drosophila Protein interaction map

FBgn0261341

DroID - A comprehensive database of gene and protein interactions.

FBgn0261341

DRSC - Results frm RNAi screens

FBgn0261341

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0261341

Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution

Interactive Fly

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

40149

MIST (protein-protein) - An integrated Molecular Interaction Database

verm

Synonyms and Secondary IDs (13)

Reported As

Symbol Synonym

CG8756

(Hosono et al., 2015, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Lebo et al., 2009, McKay et al., 2008, Lecuyer et al., 2007, Luschnig et al., 2006, Wang et al., 2006, Apidianakis et al., 2005, Cirelli et al., 2005, Stanyon et al., 2004)

DmCDA2

(Dixit et al., 2008)

LCBP1

(Japanese National Institute of Genetics, 2012.5.21, Lebo et al., 2009, Cook, 2008.12.1)

N63

(Pollock, 1998.3.10, McKay et al., 1996, McKay, 1995, McKay and Pollock, 1995)

hlm

(McKay et al., 2008, Pollock et al., 2008)

l(3)76BDx

(Cooper et al., 2010, Cook, 2008.12.1)

verm

(Cho et al., 2020, Kennison, 2020.10.22, Hayashi and Dong, 2017, Yao et al., 2017, Öztürk-Çolak et al., 2016, Förster and Luschnig, 2012, Gangishetti et al., 2012, Ile et al., 2012, Petkau et al., 2012, Cooper et al., 2010, Forster et al., 2010, Laprise et al., 2010, Chung et al., 2009, Araujo et al., 2007, Luschnig et al., 2006, Swanson and Beitel, 2006, Wang et al., 2006)

Name Synonyms

LDLa domain containing chitin binding protein 1

(Wang et al., 2005)

LDLa domain containing chitin binding protein-1

(Yadav et al., 2017)

Vermiform

(Campbell et al., 2019, Dong et al., 2014, Forster et al., 2010, Nelson et al., 2010, Norum et al., 2010, Swanson and Beitel, 2006)

helmsman

(McKay et al., 2008, Pollock et al., 2008, Pollock et al., 1998)

vermiform

(Hayashi and Dong, 2017, Choi et al., 2011, Cooper et al., 2010, Laprise et al., 2010, Tiklova et al., 2010, Chung et al., 2009, Dixit et al., 2008, Araujo et al., 2007, Luschnig et al., 2006, Wang et al., 2006)

Secondary FlyBase IDs

FBgn0013991
FBgn0036901

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

References (93)