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Gene Dmel\CG42669

General Information
Symbol	Dmel\CG42669	Species	D. melanogaster
Name		Annotation symbol	CG42669
Feature type	protein_coding_gene	FlyBase ID	FBgn0261551
Gene Model Status	Current	Stock availability	21 publicly available
Also Known As	CG32306, CG13797
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	62E2-62E2	Sequence location	3L:2,412,088..2,466,353 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG42669 (FBgn0261551). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 24 alleles are reported. No phenotypic data is available. It has 16 annotated transcripts and 16 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult midgut, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Gene sequence location is 3L:2412088..2466353.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Controlled Vocabulary Terms day 6 of adulthood day 5 of adulthood male day 7 of adulthood spermatozoon
FB2012_01	References Makunin and Yurlova, 2010, Genetika, Moscow 46(9): 1202--1204 Sequence features BKN31417 HFA07981 HFA08296 HFA08332 BKN45965 BKN23471 HFA08333 BKN34056 HFA08494
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 62E2-62E2   Limits computationally determined from genome sequence between P{PZ}slsrL182 and P{PZ}Spn06911 62E3
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG42669 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Annotated transcripts may not represent all possible combinations of alternative exons and/or alternative promoters. Gene merge based on EST/cDNA data.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG42669-RA FBtr0302674  NM_167948   2084   475 CG42669-RC FBtr0302675  NM_167949   1917   416 CG42669-RE FBtr0302676  NM_001169858   6463   1702 CG42669-RF FBtr0302677  NM_001169859   5658   1400 CG42669-RG FBtr0302678  NM_001202102   6676   1967 CG42669-RH FBtr0302679  NM_001202103   6281   2028 CG42669-RJ FBtr0302681  NM_001202105   1994   266 CG42669-RK FBtr0302682  NM_139464   7218   2223 CG42669-RL FBtr0302683  NM_206242   7205   1877 CG42669-RM FBtr0302684  NM_001202101   7307   1877 CG42669-RN FBtr0302685  NM_001202100   6212   1446 CG42669-RO FBtr0306699     2247   407 CG42669-RP FBtr0306700     2512   663 CG42669-RQ FBtr0306701     7472   1877 CG42669-RR FBtr0306702     6947   1702 CG42669-RS FBtr0306703     6930   1621
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG42669-PA   FBpp0291814   51.9   475   9.67     NP_728744   AAF47647 CG42669-PC   FBpp0291815   45.8   416   9.93     NP_728745   AAN12222 CG42669-PE   FBpp0291816   184.1   1702   8.87     NP_001163329   ACZ94601 CG42669-PF   FBpp0291817   151.6   1400   9.76     NP_001163330   ACZ94602 CG42669-PG   FBpp0291818   211.3   1967   9.90     NP_001189031   ADV37468 CG42669-PH   FBpp0291819   218.8   2028   10.00     NP_001189032   ADV37469 CG42669-PJ   FBpp0291821   28.3   266   9.31     NP_001189034   ADV37471 CG42669-PK   FBpp0291822   239.9   2223   9.78     NP_647721   AAF47644 CG42669-PL   FBpp0291823   201.7   1877   9.58     NP_995964   AAS64937 CG42669-PM   FBpp0291824   201.7   1877   9.58     NP_001189030   ADV37467 CG42669-PN   FBpp0291825   155.6   1446   8.90     NP_001189029   ADV37466 CG42669-PO   FBpp0297638   43.4   407   10.42       CG42669-PP   FBpp0297639   72.0   663   9.73       CG42669-PQ   FBpp0297640   201.7   1877   9.58       CG42669-PR   FBpp0297641   184.1   1702   8.87       CG42669-PS   FBpp0297642   173.1   1621   9.74
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140663   AA140932   AA141121   AA141124   AA141127   AA141143   AA141196   AA141199   AA141201   AA141234   AA141323   AA141354   AA141371   AA141408   AA141422   AA141464   AA141478   AA141489   AA141497   AA141560   AA141562   AA141609   AA141611   AA141655   AA141676   AA141689   AA141707   AA141711   AA141735   AA141736   AA141743   AA141801   AA141834   AA141881   AA142178   AA440163   AA949611   AE014296 AAF47644   AE014296 AAF47647   AE014296 AAN12222   AE014296 AAS64937   AE014296 ACZ94601   AE014296 ACZ94602   AE014296 ADV37466   AE014296 ADV37467   AE014296 ADV37468   AE014296 ADV37469   AE014296 ADV37471   AI109942   AI124308   AI133904   AI296338   AI386899   AI387761   AI390059   AI402173   AI531290   AI544022   AI546631   AI944937   AI947077   AW942977   AY051769 AAK93193   BE977063   BF486607   BF489212   BF490157   BF490174   BF492232   BF493302   BF494225   BF496932   BF498568   BF498662   BF499941   BF500786   BF500825   BF501548   BF502114   BF502118   BF502611   BF505120   BF505322   BF505822   BF506775   BG633755   BG634017   BG634034   BG634441   BG634891   BG635085   BG639173   BG640306   BI142244   BI168988   BI170191   BI212522   BI235136   BI235149   BI235386   BI239431   BI352942   BI564851   BI565023   BI565487   BI569606   BI570628   BI571886   BI574131   BI575214   BI575537   BI576026   BI577030   BI577075   BI582411   BI582454   BI583280   BI583840   BI583851   BI583993   BI584070   BI584613   BI585630   BI585912   BI586575   BI586861   BI587997   BI588375   BI588406   BI588459   BI588663   BI588766   BI588884   BI589090   BI589239   BI590672   BI590731   BI592794   BI593032   BI607877   BI607977   BI608784   BI610522   BI610661   BI611018   BI611159   BI611230   BI611710   BI612977   BI613394   BI615509   BI616145   BI616581   BI617439   BI617684   BI618824   BI619653   BI620053   BI620538   BI620781   BI621147   BI621284   BI622500   BI622740   BI623088   BI623093   BI623319   BI623627   BI624745   BI625317   BI625766   BI625785   BI625802   BI626350   BI626426   BI626450   BI626871   BI627441   BI627518   BI628367   BI628419   BI628426   BI628436   BI628544   BI629001   BI629190   BI629211   BI629381   BI630149   BI630924   BI631188   BI631763   BI631785   BI631828   BI631848   BI631900   BI631995   BI634197   BI634339   BI634950   BI635165   BI636622   BI641728   BT011165   BT088915   BT099803   BT099911   BT099998   BT100203   CO153056   CO153494   CO154983   CO155232   CO176946   CO177555   CO179042   CO179169   CO179206   CO179305   CO182883   CO185841   CO187196   CO187678   CO187710   CO187913   CO189023   CO189129   CO190350   CO190773   CO190982   CO195863   CO196399   CO261955   CO262330   CO262568   CO263196   CO263244   CO263378   CO263592   CO264634   CO266208   CO266621   CO267454   CO267553   CO268027   CO268650   CO269696   CO271850   CO271971   CO273023   CO273227   CO274206   CO275125   CO275338   CO275570   CO275968   CO276551   CO277291   CO278383   CO278479   CO279082   CO280443   CO281714   CO281955   CO281966   CO282275   CO282855   CO284008   CO284265   CO284404   CO286623   CO286890   CO288104   CO288135   CO290009   CO290169   CO290180   CO290679   CO290759   CO291316   CO291587   CO291788   CO291860   CO292855   CO293028   CO293512   CO293878   CO294202   CO294380   CO294540   CO295207   CO295238   CO297010   CO297706   CO300381   CO300478   CO301681   CO302049   CO302309   CO302349   CO302681   CO303318   CO303356   CO303980   CO304026   CO304946   CO305914   CO307131   CO308453   CO309390   CO309805   CO310496   CO311647   CO311693   CO311933   CO312111   CO312182   CO315577   CO315625   CO315650   CO316352   CO316667   CO317096   CO317213   CO317355   CO319523   CO320976   CO320977   CO321140   CO322033   CO323294   CO324658   CO324776   CO326836   CO326845   CO326862   CO327048   CO327604   CO328187   CO328257   CO328314   CO328871   CO329111   CO330975   CO331792   CO332493   CO332596   CO332733   CO333277   CO335337   CO336665   CO337673   CO338920   CO339169   CO339604   CO340021   CO340197   CO340225   CO340355   CO340387   CO340748   CO340851   CO340882   CO340913   CO340947   CO341122   CO341778   CO341986   CO342406   CO343049   CO343368   CO343580   CO344379   CO344766   CO344920   CO344971   CX309643   CX309644   CZ467112   CZ467113   CZ470719   CZ478868   CZ481006   CZ481007   DN154318   EC058656   EC059247   EC062393   EC068661   EC074885   EC075864   EC081514   EC081737   EC081833   EC081916   EC088240   EC196188   EC201628   EC211946   EC213572   EC217478   EC218074   EC220775   EC226733   EC234245   EC237949   EC243657   EC245647   EC251154   EC251226   EC254444   EC256380   EC259518   EC263131   EC264697   EC267467   EL884742   ES690779   EV578675   GH291424   GH291425   GH941837   GH970049   GH974840
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	E1JIB9 E1JIC0 Q7KV98 Q8IRF0 Q960Y7 Q9W013 Q9W016 Q7KV93
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0261551    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0261551 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0261551 expression level Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3115) embryo 02-04hr  (1602) embryo 04-06hr  (972) embryo 06-08hr  (865) embryo 08-10hr  (836) embryo 10-12hr  (690) embryo 12-14hr  (877) embryo 14-16hr  (2217) embryo 16-18hr  (1709) embryo 18-20hr  (1196) embryo 20-22hr  (971) embryo 22-24hr  (919) larva L1  (783) larva L2  (1072) larva L3 12hr old  (809) larva L3 puffstage 1-2  (629) larva L3 puffstage 3-6  (1505) larva L3 puffstage 7-9  (2032) white prepupae new  (2210) white prepupae 12hr  (2028) white prepupae 24hr  (2278) pupae 2d postWPP  (3474) pupae 3d postWPP  (2769) pupae 4d postWPP  (2878) adult male 01day  (3915) adult male 05day  (4981) adult male 30day  (5278) adult female 01day  (1990) adult female 05day  (2007) adult female 30day  (2134) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3115) embryo 02-04hr  (1602) embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr  (2217) embryo 16-18hr  (1709) embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6  1505 larva L3 puffstage 7-9  (2032) white prepupae new  (2210) white prepupae 12hr  (2028) white prepupae 24hr  (2278) pupae 2d postWPP  (3474) pupae 3d postWPP  (2769) pupae 4d postWPP  (2878) adult male 01day  (3915) adult male 05day  (4981) adult male 30day  (5278) adult female 01day  (1990) adult female 05day  (2007) adult female 30day  (2134) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0261551 expression level Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3115) embryo 02-04hr  (1602) embryo 04-06hr  (972) embryo 06-08hr  (865) embryo 08-10hr  (836) embryo 10-12hr  (690) embryo 12-14hr  (877) embryo 14-16hr  (2217) embryo 16-18hr  (1709) embryo 18-20hr  (1196) embryo 20-22hr  (971) embryo 22-24hr  (919) larva L1  (783) larva L2  (1072) larva L3 12hr old  (809) larva L3 puffstage 1-2  (629) larva L3 puffstage 3-6  (1505) larva L3 puffstage 7-9  (2032) white prepupae new  (2210) white prepupae 12hr  (2028) white prepupae 24hr  (2278) pupae 2d postWPP  (3474) pupae 3d postWPP  (2769) pupae 4d postWPP  (2878) adult male 01day  (3915) adult male 05day  (4981) adult male 30day  (5278) adult female 01day  (1990) adult female 05day  (2007) adult female 30day  (2134) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3115) embryo 02-04hr  1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr  2217 embryo 16-18hr  1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6  1505 larva L3 puffstage 7-9  2032 white prepupae new  2210 white prepupae 12hr  2028 white prepupae 24hr  2278 pupae 2d postWPP  (3474) pupae 3d postWPP  (2769) pupae 4d postWPP  (2878) adult male 01day  (3915) adult male 05day  (4981) adult male 30day  (5278) adult female 01day  1990 adult female 05day  2007 adult female 30day  2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3115 embryo 02-04hr    1602 embryo 04-06hr    972 embryo 06-08hr    865 embryo 08-10hr    836 embryo 10-12hr    690 embryo 12-14hr    877 embryo 14-16hr    2217 embryo 16-18hr    1709 embryo 18-20hr    1196 embryo 20-22hr    971 embryo 22-24hr    919 larva L1    783 larva L2    1072 larva L3 12hr old    809 larva L3 puffstage 1-2    629 larva L3 puffstage 3-6    1505 larva L3 puffstage 7-9    2032 white prepupae new    2210 white prepupae 12hr    2028 white prepupae 24hr    2278 pupae 2d postWPP    3474 pupae 3d postWPP    2769 pupae 4d postWPP    2878 adult male 01day    3915 adult male 05day    4981 adult male 30day    5278 adult female 01day    1990 adult female 05day    2007 adult female 30day    2134 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0261551    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0261551 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult midgut, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052306
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG42669GD10849 CG42669GD16028 Phenotype manifest in Allele
Classical Alleles ( 19 )
For All Classical Alleles Show
Allele of CG42669 Class Mutagen Stocks Known lesion CG42669A491 1 -- CG42669BG02427 P-element activity 1 -- CG42669c01377 piggyBac transposase 1 -- CG42669c03545 1 -- CG42669c06485 piggyBac transposase 1 -- CG42669d04304 1 -- CG42669d07601 1 -- CG42669e01039 piggyBac transposase 1 -- CG42669e01203 1 -- CG42669e03236 piggyBac transposase 1 -- CG42669e03436 1 -- CG42669f01709 1 -- CG42669MB01547 1 -- CG42669MB10299 1 -- CG42669MI00838 1 -- CG42669NP6515 1 -- CG42669NP6517 1 -- CG42669c02610 0 -- CG42669d11625 0 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG42669 Class Mutagen Stocks Known lesion CG42669GD10849 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42669GD16028 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42669HM05125 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42669HMS00985 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG42669KK103279 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6090 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{TRiP.HMS00985} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG42669MI00838 NA P{GT1}CG42669BG02427 NA PBac{5HPw+}CG42669A491 NA PBac{PB}CG42669c01377 NA PBac{PB}CG42669c02610 NA PBac{PB}CG42669c03545 NA PBac{PB}CG42669c06485 NA PBac{RB}CG42669e01039 NA PBac{RB}CG42669e01203 NA PBac{RB}CG42669e03236 NA PBac{RB}CG42669e03436 NA PBac{WH}CG42669f01709 NA insertion of enhancer trap binary system Mi{ET1}CG42669MB01547 No Mi{ET1}CG42669MB10299 No P{GawB}CG42669NP6515 No P{GawB}CG42669NP6517 No insertion of mobile activating element P{XP}CG42669d04304 NA P{XP}CG42669d07601 NA P{XP}CG42669d11625 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG42669 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0261551 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38306
Orthologs
Genome-wide drosophilid orthologs	Dana\GF24919 Dana\GF24920 Dere\GG14864 Dere\GG14865 Dgri\GH15727 Dgri\GH15728 Dmoj\GI12783 Dmoj\GI12784 Dper\GL24662 Dpse\GA16820 Dpse\GA23941 Dsec\GM14491 Dsec\GM14492 Dsim\GD13687 Dsim\GD13688 Dvir\GJ16082 Dvir\GJ16083 Dwil\GK12646 Dwil\GK12647 Dyak\GE20320 Dyak\GE20321
Curated drosophilid orthologs	Dpse\GA16820
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0237638 FBgn0203267 FBgn0162247 FBgn0135540 FBgn0123198 FBgn0107119
Stocks & Reagents
Stocks Listed in FlyBase ( 21 )
Harvard	- P{XP}CG42669d04304 - P{XP}CG42669d07601 - PBac{PB}CG42669c01377 - PBac{PB}CG42669c03545 - PBac{PB}CG42669c06485 - PBac{RB}CG42669e01039 - PBac{RB}CG42669e01203 - PBac{RB}CG42669e03236 - PBac{RB}CG42669e03436 - PBac{WH}CG42669f01709
VDRC	v34509 w1118; P{GD10849}v34509 v48439 w1118; P{GD16028}v48439/TM3
	More stocks available...
Genomic Clones ( 2 )
	BACR15B04 BACR27A03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 395 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT07527 AT15596 LD29569 RE17641 SD10644
Other clones	IP21743 MIP13274
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT01627 AT02666 AT07287 AT08213 AT09344 AT10944 AT13006 AT13113 AT14725 AT15818 AT15870 AT16914 AT17747 AT17752 AT18402 AT25147 AT26456 AT26478 AT29132 AT29478 AT30046 AT30070 AT30652 AT31277 AT31555 GH10934 GH17272 GH18414 GH21528 GM21379 LD14764 LP10204 RE09931 RE11569 RE17627 RE30946 RE30960 RE31226 RE35915 RH01709 RH04324 RH04390 RH05391 RH07193 RH10576 RH10904 RH11852 RH12090 RH13479 RH16019 RH16209 RH17093 RH17293 RH17409 RH18095 RH20464 RH20543 RH21653 RH21844 RH22544 RH22556 RH22735 RH22832 RH23859 RH25251 RH25614 RH26642 RH26972 RH28966 RH29568 RH29611 RH29690 RH29717 RH30058 RH30182 RH30333 RH30767 RH31242 RH31611 RH32493 RH33778 RH33943 RH37622 RH38076 RH39930 RH42014 RH42543 RH45176 RH46016 RH46595 RH47775 RH48091 RH49746 RH50730 RH51215 RH51705 RH51995 RH52448 RH52603 RH54383 RH54653 RH55168 RH55173 RH55446 RH55941 RH56741 RH56809 RH56819 RH56839 RH56978 RH57786 RH58019 RH58044 RH58239 RH59131 RH60268 RH60713 RH61408 RH61433 RH61478 RH61508 RH61578 RH61691 RH62378 RH62653 RH63266 RH64377 RH65659 RH66252 RH66273 RH66292 RH67049 RH67365 RH67395 RH67957 RH68761 RH68859 SD02265 SD09524 SD11290 SD16292 SD16426 SD18363 SD25304
Other clones	4830 10085 51155 53068 63237 67505 79348 83262 101573 108515 146896 158728 214215.20 214223.20 214255.20 277112 524310 524652 534020 AI124308 AM04010 AT21017 bs07b09 bs34g08 bs59d06 CK01.11A.F1 CK01.46B.F5 CK01.74D.D4 CK01.85C.C2 CK01.85D.H1 CK01.86A.E12 CK01.94A.B6 CK01.100C.F10 CK01.104D.B6 CK00330 CK00365 CK01023 CK01258 CK01331 CK01336 CK01363 CK01421 CK01448 CK01456 CK01462 CK01603 CK01617 CK01634 CK01718 CK01792 CK01833 CK01958 CK02010 CK02026 CK02089 CK02102 CK02134 CK02139 CK02216 CK02225 CK02311 CK02315 CK02322 CK02323 CK02429 CK02526 CK02564 CK02584 CK02648 Dmel_dig_010449_0722_0492 DMG5-chr3L.5.003.pred.a EC24219 EC41454 EK004047 EK012921 EK027108 EK031312 EK032025 EK034826 EK042807 EK043120 EK047843 EK049563 EK050409 EK051718 EK053809 EK058252 EK058646 EK058746 EK059016 EK063402 EK064209 EK067741 EK067829 EK072843 EK073239 EK073259 EK074745 EK075111 EK077604 EK082259 EK085053 EK085812 EK087739 EK087859 EK088356 EK089024 EK089958 EK092228 EK095603 EK104936 EK105342 EK109250 EK110145 EK113540 EK116527 EK117157 EK117938 EK119258 EK121312 EK123735 EK129929 EK130147 EK133510 EK139758 EK145429 EK147049 EK150160 EK150812 EK154064 EK158627 EK159162 EK159214 EK160129 EK161453 EK165022 EK165624 EK165964 EK170363 EK178057 EK178259 EK181905 EK182949 EK183856 EK183952 EK184711 EK187045 EK190125 EK194453 EK194822 EK197709 EK198161 EK198534 EK201106 EK201531 EK203155 EK205033 EK206320 EK206804 EK207149 EK208922 EK209011 EK215732 EK216724 EK217506 EK219351 EK221844 EK225650 EK225919 EK227244 EK227895 EK228028 EK240954 EK241147 EK243327 EK243447 EK246762 EK249663 EK253707 EK258226 EK261906 EK262043 EK262115 EK264714 EK265613 EK267119 EK267342 EK267760 EK278462 EK289455 EK289458 EK290364 EK291554 EK292041 EK296753 EK301716 EK303642 EK304016 EK304364 EN01164 EN02064 EN05139 EN05635 EN10044 EN13005 EN15045 EP00315 EP01012 EP02341 EP04728 EP04737 EP04754 EP05547 EP07649 EP08720 EP08834 EP08943 EP09905 EP10203 EP10234 EP10464 EP10540 EP11254 EP11446 EP11516 EP11550 EP11622 EP11914 EP13133 EP13602 EP14842 EP16016 EP16650 EP17315 EP19157 EP19847 EP20450 EP21045 GH09348 IP15992 LD46039 RP004261869 RP004356039 RP004432244
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0261551 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38306 2769003
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG12790 CG13797 CG16763 (Misra, 2001.8.10) Source for merge of: CG12790 CG13798 CG13799 (FlyBase Genome Annotators, 2002-2003) Source for merge of: CG32306 CG33231 (FlyBase Genome Annotators, 2010)
Additional comments	Annotations CG32306 and CG33231 merged as CG42669 in release 5.25 of the genome annotation. (FlyBase Genome Annotators, 2010) Annotations CG12790, CG13797, CG13798, CG13799 and CG16763 merged as CG32306 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) New annotation (CG33231) in release 3.2 of the genome annotation. (FlyBase Genome Annotators, 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139464 NM_167948 NM_167949 NM_206242 NM_001169858 NM_001169859 NM_001202100 NM_001202101 NM_001202102 NM_001202103 NM_001202105 RefSeq (Proteins) • NP_647721 NP_728744 NP_728745 NP_995964 NP_001163329 NP_001163330 NP_001189029 NP_001189030 NP_001189031 NP_001189032 NP_001189034 DDBJ / EMBL / GenBank • AA949611 AAF47644 AAF47647 AAK93193 AAN12222 AAS64937 ACZ94601 ACZ94602 ADV37466 ADV37467 ADV37468 ADV37469 ADV37470 ADV37471 AI109942 AI944937 AI947077 AW942977 AY051769 BF505120 BF505322 CX309643 CX309644 CZ467112 CZ467113 CZ470719 CZ478868 CZ481006 CZ481007 Entrez Gene - A searchable database of RefSeq genes. • 38306 2769003 UniProtKB/TrEMBL • E1JIB9 E1JIC0 Q7KV93 Q7KV98 Q8IRF0 Q9W013 Q9W016 Q960Y7
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0261551 DRSC - Results from RNAi screens. • FBgn0261551 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0052306 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0261551 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38306 2769003 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38306 modMine - Data generated by the modENCODE project. • FBgn0261551 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0237638 FBgn0203267 FBgn0162247 FBgn0135540 FBgn0123198 FBgn0107119
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	CG12790   CG13797 (Stathopoulos et al., 2002, Misra, 2001.8.10, ) CG13798 (Boutros et al., 2004, ) CG13799   CG16763 (Misra, 2001.8.10, ) CG32306 (Lipatov et al., 2005, Keleman et al., 2009.8.5, Makunin and Yurlova, 2010, Makunin and Yurlova, 2010) CG33231 (Perkins et al., 2009) CG42669 (FlyBase Genome Annotators, 2010, Ni et al., 2010.12.1, Wasbrough et al., 2010) unnamed (Yandell et al., 2005)
Name Synonym
Secondary FlyBase IDs
	FBgn0035339 FBgn0035340 FBgn0035341 FBgn0035342 FBgn0040693 FBgn0052306 FBgn0053231
References ( 31 )
Generate a list of	All references relating to this gene ( 31 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 7 ) Computer file  ( 4 ) Automatic genome annotation  ( 1 )
Recent research papers ( 2 )
	Makunin and Yurlova, 2010, Russ. J. Genet. 46(9): 1067--1069 LTR retrotransposons as source of promoters in the drosophila genome. [FBrf0215194] Makunin and Yurlova, 2010, Genetika, Moscow 46(9): 1202--1204 [LTR retrotransposons as source of promoters in the Drosophila genome]. [FBrf0212258] Show all research papers ...