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Gene Dmel\RpS29

General Information
Symbol	Dmel\RpS29	Species	D. melanogaster
Name	Ribosomal protein S29	Annotation symbol	CG8495
Feature type	protein_coding_gene	FlyBase ID	FBgn0261599
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map	3-[49]
Cytogenetic map	85E11-85E13	Sequence location	3R:5,603,767..5,604,800 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein S29 is referred to in FlyBase by the symbol Dmel\RpS29 (CG8495, FBgn0261599). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: neuron development; neurogenesis. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Ribosomal protein S14; Ribosomal protein S14, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Gene sequence location is 3R:5603767..5604800.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	References Casad et al., 2011, Genetics 189(3): 861--870
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85E11-85E13   Left limit from inclusion within Df(3R)VW4 (citation unavailable) Right limit from inclusion within Df(3R)by10 (citation unavailable)
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location	3-[49]
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpS29 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	EST data suggest alternative polyadenylation site.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpS29-RA FBtr0082136  NM_141689   554   56
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpS29-PA   FBpp0081614   6.6   56   9.96     NP_649946   AAF54450
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S14, conserved site (IPR018271) Ribosomal protein S14 (IPR001209)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA264821   AA433282   AA696102   AA696857   AA735382   AA801734   AA803213   AA803276   AA804007   AA804131   AA820380   AA821194   AE014297 AAF54450   AI062053   AI063034   AI063480   AI064630   AI107548   AI108432   AI134930   AI135960   AI238933   AI292931   AI292958   AI294196   AI294982   AI295113   AI295850   AI386633   AI387522   AI388818   AI402942   AI403973   AI404301   AI405289   AI405827   AI514052   AI514065   AI516955   AI517607   AI546589   AX094236   AY075533 AAL68340   AY232060   BE976563   BF491750   BF498913   BG632604   BG632711   BG632735   BG633298   BG633301   BG633474   BG636308   BG636579   BG636801   BI163486   BI163716   BI164214   BI164226   BI164279   BI165878   BI165883   BI169553   BI170872   BI172640   BI173079   BI214797   BI228696   BI230084   BI230226   BI234259   BI235219   BI235770   BI236018   BI238114   BI238125   BI239140   BI239921   BI241687   BI241949   BI242087   BI243932   BI352613   BI352842   BI353301   BI353495   BI353904   BI354613   BI354687   BI354853   BI354880   BI355685   BI363044   BI366602   BI367720   BI369602   BI370615   BI372465   BI374057   BI482710   BI484355   BI484427   BI487205   BI563658   BI564070   BI564096   BI564846   BI564985   BI565080   BI566005   BI566812   BI567657   BI567726   BI568449   BI571508   BI578378   BI579449   BI581668   BI581905   BI581937   BI582107   BI582553   BI584992   BI587786   BI588138   BI588213   BI592324   BI593385   BI606615   BI607115   BI609536   BI610508   BI611043   BI613076   BI614936   BI615347   BI616923   BI622494   BI624626   BI625614   BI626739   BI628302   BI629678   BI630643   BI632211   BI634687   BI635172   BI636419   BI638323   BI639231   BI639811   BP540634   BP541184   BP541185   BP541256   BP541332   BP541421   BP541725   BP541773   BP542547   BP542601   BP543357   BP543358   BP543531   BP543900   BP543901   BP544199   BP544200   BP544305   BP544306   BP544309   BP544310   BP544609   BP544610   BP545462   BP545463   BP546066   BP546069   BP546259   BP546309   BP546325   BP546655   BP547024   BP547077   BP547141   BP547343   BP547412   BP547451   BP547666   BP547668   BP548531   BP549367   BP549368   BP549644   BP549645   BP549993   BP549994   BP550192   BP550193   BP550991   BP550992   BP551077   BP551078   BP551305   BP551306   BP551570   BP551571   BP552504   BP552865   BP552866   BP553146   BP553147   BP554269   BP554270   BT001305 AAN71060   BT001358 AAN71113   CA805061   CA805760   CK131803   CK131815   CK132522   CK605366   CK605367   CK657122   CK658108   CK661166   CO153283   CO154122   CO154166   CO154232   CO154593   CO155233   CO155997   CO181281   CO181977   CO182259   CO182861   CO182957   CO182964   CO183041   CO183099   CO183469   CO184469   CO185208   CO185272   CO186206   CO190313   CO191275   CO191707   CO192104   CO192346   CO192357   CO192752   CO193224   CO193283   CO193384   CO193647   CO193796   CO194613   CO196653   CO262894   CO262977   CO276439   CO276461   CO277280   CO292561   CO297735   CO299020   CO300939   CO301261   CO304256   CO307454   CO310730   CO324980   CO325090   CO325242   CO330640   CO335506   CO337010   CO337331   CO337635   CO338006   CO343063   CZ482957   DN153983   DN154169   EC065166   EC068394   EC071549   EC074130   EC075108   EC076101   EC077552   EC080843   EC082061   EC085669   EC196742   EC196774   EC197778   EC200918   EC201064   EC205941   EC213089   EC222933   EC232073   EC235319   EC237113   EC240458   EC256127   EC261992   EC263440   EC264244   EC264530   EC266139   EC266428   EC266433   EC266491   EC266634   EC266761   EC267363   EL871346   EL879022   EL880471   EL884338   EL884456   EV576238   EV576480   EV576555   EV576715   EV580229   EV582058   EV582567   EV584345   EV584434   EV585374   EV586237   EV586649   EV586726   EV587456   EV587527   EV589116   EV589648   EV589743   EV590845   EV591065   EV594370   EV595275   EV595365   EV595421   EV596484   EV597872   EV598644   EV598884   EV599377
UniProtKB/Swiss-Prot	Q9VH69
UniProtKB/TrEMBL	Q8IH91 Q8IHD2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0261599    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0261599 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0261599 expression level Developmental Stage   Expression Level embryo 00-02hr    101558 embryo 02-04hr    189119 embryo 04-06hr    191197 embryo 06-08hr    167755 embryo 08-10hr    200396 embryo 10-12hr    252882 embryo 12-14hr    215507 embryo 14-16hr    143043 embryo 16-18hr    161725 embryo 18-20hr    144536 embryo 20-22hr    192667 embryo 22-24hr    218417 larva L1    189228 larva L2    191208 larva L3 12hr old    171236 larva L3 puffstage 1-2    169300 larva L3 puffstage 3-6    146273 larva L3 puffstage 7-9    180865 white prepupae new    160894 white prepupae 12hr    146485 white prepupae 24hr    135428 pupae 2d postWPP    130302 pupae 3d postWPP    101585 pupae 4d postWPP    75196 adult male 01day    66727 adult male 05day    58007 adult male 30day    68979 adult female 01day    110821 adult female 05day    136278 adult female 30day    131630 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    101558 embryo 02-04hr    189119 embryo 04-06hr    191197 embryo 06-08hr    167755 embryo 08-10hr    200396 embryo 10-12hr    252882 embryo 12-14hr    215507 embryo 14-16hr    143043 embryo 16-18hr    161725 embryo 18-20hr    144536 embryo 20-22hr    192667 embryo 22-24hr    218417 larva L1    189228 larva L2    191208 larva L3 12hr old    171236 larva L3 puffstage 1-2    169300 larva L3 puffstage 3-6    146273 larva L3 puffstage 7-9    180865 white prepupae new    160894 white prepupae 12hr    146485 white prepupae 24hr    135428 pupae 2d postWPP    130302 pupae 3d postWPP    101585 pupae 4d postWPP    75196 adult male 01day    66727 adult male 05day    58007 adult male 30day    68979 adult female 01day    110821 adult female 05day    136278 adult female 30day    131630 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0261599 expression level Developmental Stage   Expression Level embryo 00-02hr    101558 embryo 02-04hr    189119 embryo 04-06hr    191197 embryo 06-08hr    167755 embryo 08-10hr    200396 embryo 10-12hr    252882 embryo 12-14hr    215507 embryo 14-16hr    143043 embryo 16-18hr    161725 embryo 18-20hr    144536 embryo 20-22hr    192667 embryo 22-24hr    218417 larva L1    189228 larva L2    191208 larva L3 12hr old    171236 larva L3 puffstage 1-2    169300 larva L3 puffstage 3-6    146273 larva L3 puffstage 7-9    180865 white prepupae new    160894 white prepupae 12hr    146485 white prepupae 24hr    135428 pupae 2d postWPP    130302 pupae 3d postWPP    101585 pupae 4d postWPP    75196 adult male 01day    66727 adult male 05day    58007 adult male 30day    68979 adult female 01day    110821 adult female 05day    136278 adult female 30day    131630 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (101558) embryo 02-04hr  (189119) embryo 04-06hr  (191197) embryo 06-08hr  (167755) embryo 08-10hr  (200396) embryo 10-12hr  (252882) embryo 12-14hr  (215507) embryo 14-16hr  (143043) embryo 16-18hr  (161725) embryo 18-20hr  (144536) embryo 20-22hr  (192667) embryo 22-24hr  (218417) larva L1  (189228) larva L2  (191208) larva L3 12hr old  (171236) larva L3 puffstage 1-2  (169300) larva L3 puffstage 3-6  (146273) larva L3 puffstage 7-9  (180865) white prepupae new  (160894) white prepupae 12hr  (146485) white prepupae 24hr  (135428) pupae 2d postWPP  (130302) pupae 3d postWPP  (101585) pupae 4d postWPP  (75196) adult male 01day  (66727) adult male 05day  (58007) adult male 30day  (68979) adult female 01day  (110821) adult female 05day  (136278) adult female 30day  (131630) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    101558 embryo 02-04hr    189119 embryo 04-06hr    191197 embryo 06-08hr    167755 embryo 08-10hr    200396 embryo 10-12hr    252882 embryo 12-14hr    215507 embryo 14-16hr    143043 embryo 16-18hr    161725 embryo 18-20hr    144536 embryo 20-22hr    192667 embryo 22-24hr    218417 larva L1    189228 larva L2    191208 larva L3 12hr old    171236 larva L3 puffstage 1-2    169300 larva L3 puffstage 3-6    146273 larva L3 puffstage 7-9    180865 white prepupae new    160894 white prepupae 12hr    146485 white prepupae 24hr    135428 pupae 2d postWPP    130302 pupae 3d postWPP    101585 pupae 4d postWPP    75196 adult male 01day    66727 adult male 05day    58007 adult male 30day    68979 adult female 01day    110821 adult female 05day    136278 adult female 30day    131630 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0261599    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0261599 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037752
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 RpS29GD13723 lethal | pupal stage, with Scer\GAL4pnr-MD237 RpS29GD13723 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 RpS29GD13723 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 RpS29GD13723 ganglion mother cell | larval stage, with Scer\GAL41407 RpS29GD13723
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of RpS29 Class Mutagen Stocks Known lesion RpS29A074 1 -- RpS29c03574 1 -- RpS29f00489 piggyBac transposase 1 -- RpS29unspecified 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpS29 Class Mutagen Stocks Known lesion RpS29GD13723 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RpS29KK109069 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpS29GD16448 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	In(3R)ScrMscLAntpBR
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13723} NA P{GD16448} NA P{KK109069} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{5HPw+}RpS29A074 NA PBac{PB}RpS29c03574 NA PBac{WH}RpS29f00489 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011) neuron development inferred from mutant phenotype (Parrish et al., 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with NCBI_gi:4506717 (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with NCBI_gi:4506717 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic small ribosomal subunit inferred from sequence or structural similarity with NCBI_gi:4506717 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	gene   nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpS29 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0261599 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41200
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17840 Dere\GG17147 Dgri\GH17411 Dmoj\GI22741 Dper\GL24306 Dpse\GA21118 Dsec\GM23839 Dsim\GD18649 Dwil\GK11967 Dyak\GE25988
Curated drosophilid orthologs	Dpse\GA21118   Dyak\GE25988
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16460 NV11296 LH24812 RS29_IXOSC FBgn0068218 FBgn0213978 FBgn0190170 FBgn0178704 JGI_V11_231413 FBgn0081106 FBgn0161896 FBgn0145468 FBgn0124881 FBgn0109374 FBgn0094858 CPIJ009519 BGIBMGA004911 ACYPI000395 AGAP001595 AAEL007824 PHUM226670 GLEAN_10132
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	16031 y1 w1118; PBac{5HPw+}RpS29A074/TM3, Sb1 Ser1
Harvard	- PBac{PB}RpS29c03574 - PBac{WH}RpS29f00489
VDRC	v101405 P{KK109069}VIE-260B v28849 w1118; P{GD13723}v28849/TM3 v28850 w1118; P{GD13723}v28850/TM3
Genomic Clones ( 2 )
	BACR23O04 BACR30F01 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 325 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT13329 RH06643
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01101 GH02449 GH03319 GH05096 GH07263 GH11224 GH12687 GH13024 GH13893 GH15078 GH15967 GH16001 GH16769 GH18072 GH19839 GH22282 GH23537 GH23827 GH23862 GH23952 GH25244 GH25965 GH27106 GH27119 GH27564 GH27754 GH28634 GM03420 GM05064 GM08561 GM10408 GM10495 GM12514 GM12921 GM14842 GM15234 GM16793 GM20058 GM21020 GM23057 GM23887 GM25547 GM27615 GM27893 GM28621 GM28687 GM31878 LD08550 LD21217 LD23962 LP07516 LP08649 LP09609 LP12818 LP12832 LP14091 LP14679 LP20368 LP23158 RE02903 RE03189 RE03842 RE03854 RE03927 RE05867 RE05873 RE10763 RE12475 RE15175 RE20924 RE29934 RE31036 RE31691 RE32004 RE34495 RE34513 RE36543 RE38813 RE39155 RE39313 RE41751 RE47757 RE55833 RE57317 RE59433 RE61567 RE67443 RE67528 RE70724 RE73479 RH09972 RH11415 RH14332 RH16003 RH19778 RH20025 RH24362 RH28659 RH29223 RH29342 RH35085 RH35753 RH35791 RH36561 RH38203 RH38285 RH38891 RH40001 RH42148 RH44437 RH44954 RH47087 RH56667 RH58580 RH59925 RH62373 RH62590 RH62745 RH66074 RH67780 SD14324 SD14587 SD16434 SD18101 SD20578 SD21761 SD22496 SD25874
Other clones	4870 54664 57072 58097 67147 67296 70980 72088 80940 99772 106146 149090 214247.38 522243 523162 523210 523281 523912 524654 527043 542434 562069 569474 569863 AA433282 bs53b07 CK01.2C.F3 CK01.17B.D4 CK01.18D.B1 CK01.58D.B6 CK01.103A.F4 CK01.103C.F8 CK01.147C.D8 CK01.147D.E9 Dmel_dig_001508_0708_0331 Dmel_dig_003771_0710_0890 Dmel_dig_004558_0678_2186 Dmel_dig_005159_0658_1424 Dmel_dig_007947_0646_2502 Dmel_dig_010245_0644_1730 Dmel_dig_010269_0698_2790 Dmel_dig_015034_0658_2738 Dmel_dig_019000_0713_2896 Dmel_dig_019476_0638_2620 Dmel_dig_019751_0660_0680 Dmel_neb_002884_0091_3575 Dmel_neb_004715_0435_2522 Dmel_neb_005085_0110_0415 Dmel_neb_008599_0588_2964 Dmel_neb_009073_0924_1306 Dmel_neb_009315_0691_1468 Dmel_neb_009507_0862_2192 Dmel_neb_010549_0399_3442 Dmel_neb_010844_0687_0358 Dmel_neb_011468_0105_3378 Dmel_neb_012383_0908_1149 Dmel_neb_012481_0826_1591 Dmel_neb_012628_0335_3311 Dmel_neb_013663_0103_1057 Dmel_neb_013771_0600_3428 Dmel_neb_015541_0423_1722 Dmel_neb_015714_0333_0605 Dmel_neb_015984_0929_2111 EC13950 EC18131 EC22341 EC24159 EC24340 EC24350 EC24463 EC24567 EC25772 EC28138 EC29931 EC30115 EC30616 EC31702 EC33091 EC33559 EC33573 EC34415 EC35319 EC35531 EC35690 EC36546 EC36819 EC38895 EK007117 EK016846 EK047739 EK086654 EK086956 EK120848 EK120919 EK123720 EK146707 EK170433 EK174337 EK179729 EK180607 EK192908 EK195303 EK195556 EK195922 EK200446 EK222356 EK244214 EK254616 EK295808 EN01639 EN03532 EN03630 EN03749 EN04429 EN05637 EN07157 EN10613 EN13643 EN14307 EN14945 EN15750 EP16032 ESG0116b.B21_E09 ESG0119c.B21_E09 FGA006E02 FGA011D02 FGA011H11 FGB001H12 FGC001E01 FGC004G03 FGC005C05 FGC014C10 FGC014H04 FGC020A08 FGC021A02 FGC023A04 FGC024F02 FGC025B08 FGC025B10 FGC026G10 FGC031D10 FGH102E01 FGH102E04 FGH104E04 FGH105A07 FGH105B11 FGH108G01 FGH112F03 FGH113B10 FGH113H03 FGH116A01 FGH116F10 FGH117B02 FGH119D06 FGH119D09 FGH128G06 FGM101B05 FGM102F07 FGM104F10 FGM105G08 FGM210D01 FGM210G10 FGM212B06 FGM213F03 FGM219B05 FGM221C03 FGM222G09 FGM228H11 GH05285 GH12517 IP03460 IP08934 IP10314 IP15652 IP15752 LP08482 RE15810 RE26322 RE35548 RE52176 RE53529 RE65438 RE72244 RH17136 RH19203 RH19732 RH20790 RH34333 RH54377 RH64218 RH73218 RH74116 SD08023 SD13946 UT01875
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0261599 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41200 49223
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG8495 anon-EST:fe3B4 (Bayraktaroglu, 2000.11.2) Source for merge of: CG8495 BcDNA:AT13329s (FlyBase, 1996-) Source for merge of: CG8495 BcDNA:AT28563 (FlyBase, 1996-) Source for merge of: CG8495 BcDNA:RH06643 (FlyBase, 1996-) Source for merge of: RpS29 anon-WO0118547.360 (FlyBase, 1996-) Source for merge of: RpS29 M(3)85E (Marygold et al., 2007)
Additional comments	Source for merge of CG8495 BcDNA:AT13329 was shared cDNA (AT13329) (date:030602). (FlyBase, 1996-) Source for merge of RpS29 anon-WO0118547.360 was sequence comparison (date:051113). (FlyBase, 1996-) Source for merge of CG8495 BcDNA:RH06643 was TrEMBL update (date:020807). (FlyBase, 1996-) Source for merge of CG8495 BcDNA:AT28563 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
	Minute gene. (Marygold et al., 2007) Deletions removing RpS29 but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes. (Marygold et al., 2007) Molecularly-defined mutations in RpS29 result in Minute phenotypes. (Marygold et al., 2007) dsRNA has been made from templates generated with primers directed against this gene. RNAi of RpS29 causes an increase in the number of class I da neurons and alterations in the number of MD neurons. (Parrish et al., 2006) Area matching Drosophila EST AA821194. This EST forms a 987bp contig with ESTS AA736168 and has sequence similarity to Human 40s ribosomal protein s29. Probable intron in gene represented by EST AA821194. (Davies, 2001.3.15) Identification: By virtue of the Minute phenotype of the segmental deficiency produced between T(Y;3)G42 and T(Y;3)L17 Df(3R)85E2-4;86A and equated to M(3)S31 (Lindsley et al., 1972). M(3)S31 subsequently shown to lie in 86D (Ashburner et al., 1981) and this Minute deficiency mapped to 85E2-F1 and renamed M(3)LS5 (Kemphues, Raff and Kaufman, 1983).   One of a class of genes (see MIN record) that when present in one, rather than two, copies, produce a characteristic phenotype consisting of short slender bristles and delayed development.
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141689 RefSeq (Proteins) • NP_649946 DDBJ / EMBL / GenBank • AA433282 AA821194 AAF54450 AAL68340 AAN71060 AAN71113 AX094236 AY075533 BF491750 BF498913 BI571508 BT001305 BT001358 CZ482957 Entrez Gene - A searchable database of RefSeq genes. • 41200 UniProtKB/Swiss-Prot • Q9VH69 UniProtKB/TrEMBL • Q8IH91 Q8IHD2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein S14, conserved site (IPR018271) Ribosomal protein S14 (IPR001209)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0261599 DRSC - Results from RNAi screens. • FBgn0261599 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037752 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0261599 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41200 49223 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41200 modMine - Data generated by the modENCODE project. • FBgn0261599 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16460 NV11296 LH24812 RS29_IXOSC FBgn0068218 FBgn0213978 FBgn0190170 FBgn0178704 JGI_V11_231413 FBgn0081106 FBgn0161896 FBgn0145468 FBgn0124881 FBgn0109374 FBgn0094858 CPIJ009519 BGIBMGA004911 ACYPI000395 AGAP001595 AAEL007824 PHUM226670 GLEAN_10132
Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	anon-EST:fe3B4   anon-WO0118547.360   BcDNA:AT13329   BcDNA:AT28563   BcDNA:RH06643   CG8495 (Marygold et al., 2007, Parrish et al., 2006, Huang et al., 2005, Keleman et al., 2009.8.5, Cammarato et al., 2011) M(3)85E (Marygold et al., 2007, ) M(3)LS5   RpS29 (Marygold et al., 2007, Neumüller et al., 2011) unnamed (Schmid and Tautz, 1997, Ashburner et al., 1981)
Name Synonym	anon-fast-evolving-3B4   Minute (3) 85E   Ribosomal protein S29 (Ashburner and Marygold, 2004.7.2, Cammarato et al., 2011)
Secondary FlyBase IDs
	FBgn0002620 FBgn0025195 FBgn0037752 FBgn0061386 FBgn0062070 FBgn0064844 FBgn0064994 FBgn0065013
References ( 33 )
Generate a list of	All references relating to this gene ( 33 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 3 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 3 ) Curated genome annotation  ( 1 ) Automatic genome annotation  ( 1 ) Book  ( 2 )
Recent research papers ( 3 )
	Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Casad et al., 2011, Genetics 189(3): 861--870 Cardiomyopathy Is Associated with Ribosomal Protein Gene Haplo-Insufficiency in Drosophila melanogaster. [FBrf0216591] Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Show all research papers ...