A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\osa

General Information
SymbolDmel\osaSpeciesD. melanogaster
NameosaAnnotation symbolCG7467
Feature typeprotein_coding_geneFlyBase IDFBgn0261885
Gene Model StatusCurrent Stock availability 19 publicly available
Also Known Aseld
Genomic Location
Chromosome (arm)3RRecombination map3-60.0
Cytogenetic map90C1-90C2Sequence location3R:13,513,540..13,544,059 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene osa is referred to in FlyBase by the symbol Dmel\osa (CG7467, FBgn0261885). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: DNA binding. There is experimental evidence for 12 unique biological process terms, many of which group under: biological regulation; post-embryonic organ morphogenesis; appendage development; system development; cellular process; regionalization; instar larval or pupal morphogenesis; segment specification; neuron differentiation; regulation of RNA metabolic process. 66 alleles are reported. The phenotypes of these alleles are annotated with: adult segment; organ system subdivision; thoracic segment; organ system; imaginal precursor; external compound sense organ; integumentary plate; embryonic/larval imaginal precursor; portion of tissue; epithelium. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: ARID/BRIGHT DNA-binding domain; Protein of unknown function DUF3518. Gene sequence location is 3R:13513540..13544059.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
osa: osa (J.A. Kennison)
Isolated as a dominant suppressor of the antenna to leg transformation in Pc2 AntpNs double heterozygotes. Also acts as a dominant suppressor of AntpNs, Pc and Pcl alleles. Recessive embryonic lethality associated with all alleles. Also fails to complement In(3R)Antprv1 for viability.
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Description
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FB2011_10
References
FB2012_01
References
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
90C1-90C2  
(determined by in situ hybridisation); Limits computationally determined from genome sequence between P{PZ}l(3)0788207882 and P{EP}cpoEP3679  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
90B1-90D1  
Location from complementation analysis with deficiency and duplication chromosomes (details unspecified).  
90C1-90C1  
(determined by in situ hybridisation)  
90C1-90C2  
90C5-90C8  
(determined by in situ hybridisation)  
90C1-90C2  
(determined by in situ hybridisation)  
90B-90C  
(determined by in situ hybridisation)  
90C5-90C8  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\osa for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0083483 FBtr0301487 FBtr0089582 FBtr0089583 FBtr0089581 FBtr0083508 FBpp0082916 FBpp0088962 FBpp0290702 FBpp0088544 FBpp0088543 FBpp0082932 FBti0042655 FBti0044256 FBti0099922 FBti0131825 FBti0050252 FBti0143678 FBti0015262 FBti0106477 FBti0108844 FBti0005397 FBti0011369 FBti0107358 FBti0106717 FBti0055770 FBti0108152 FBti0025629 FBti0006051 FBti0006052 FBti0111172 FBti0103813 FBti0104502 FBti0028141 FBti0039604 FBti0018661 FBti0057041 FBti0034937 FBti0027192 FBti0110121 FBti0049665 FBti0111964 FBti0108908 FBti0112449
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0089582
  10662
  2703
FBtr0089581
  10701
  2716
FBtr0089583
  10221
  2556
FBtr0301487
  10410
  2716
Additional Transcript Data & Comments
Reported size (kB)
10.601 (sequence analysis)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
osa-PA  
FBpp0088544  
282.9  
2703  
7.49  
osa-PB  
FBpp0088543  
284.1  
2716  
7.45  
osa-PC  
FBpp0088962  
269.0  
2556  
7.46  
osa-PD  
FBpp0290702  
284.1  
2716  
7.45  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
osa protein is ubiquitously distributed in early embryos and in wing discs. In eye discs, osa protein is present all over the disc but the strongest expression occurs in a band just anterior to the morphogenetic furrow.
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG31249-RA osa-RD osa-RA osa-RC osa-RB
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
wing & macrochaeta
hide Classical Alleles ( 61 )
For All Classical Alleles Show

Allele of osaClassMutagenStocksKnown lesion
osa2hypomorphic allele - genetic evidence2 --
osaArv12 --
osa000901 Yes
osa3081 --
osac027451 --
osaCB-0493-3
1 --
osad051891 --
osad101901 --
osaEY096191 --
osaf018581 --
osaKG031171 --
osaMI02292
1 --
osa045390 Yes
osa046620 Yes
osa067260 Yes
osa110 --
osa120 --
osa14060
0 Yes
osa1946
0 --
osa1hypomorphic allele - genetic evidence0 --
osa2052
0 --
osa2438
0 --
osa2791
0 --
osa28230 --
osa32760 --
osa30 --
osa3R-108-310 --
osa3R-190-290 --
osa3R-51-260 --
osa3R-68-150 --
osa3R-68-330 --
osa40 --
osa4F0 --
osa4H0 Yes
osa50 --
osa6160 Yes
osa60 Yes
osa9-240 Yes
osaC819
0 --
osaCC004450 Yes
osaCPTI0030890 Yes
osadust310 --
osadust550 --
osaE17
0 --
osaE650 --
osaEP3-1074
0 Yes
osaEP3-1386
0 Yes
osaEP3-1591
0 --
osaEP3-473
0 Yes
osaEP3-619
0 Yes
osaEP3-900
0 --
osaEP3-941
0 Yes
osaEP31900 --
osaj9C30 --
osaksh-110 --
osaksh-120 --
osaksh-130 --
osaL6530b0 --
osapjc-30 --
osas3263b0 --
osaunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show

Allele of osaClassMutagenStocksKnown lesion
osaScer\UAS.cCa2 Yes
osaGD15021 Yes
osaGL003721 Yes
osaJF012071 Yes
osaAD.Scer\UAS.T:Hsim\VP160 Yes
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Not disrupted in
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 16 unique terms )
hide Terms Based on Experimental Evidence ( 15 terms )
Molecular Function
CV term
References
inferred from direct assay
(assigned by UniProtKB)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from direct assay
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
inferred from mutant phenotype
(assigned by UniProtKB)
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
(assigned by UniProtKB)
hide Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
non-traceable author statement
(assigned by UniProtKB)
inferred by curator from GO:0035060
Biological Process ( 0 terms)
Cellular Component
CV term
References
traceable author statement
non-traceable author statement
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hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
osa allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 19 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 92 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Discoverer
Kennison, 1983.
 
hide Etymology
"osa" means "fate" in Norwegian.
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: osa CG7467
Source for database merge of
Source for merge of: osa anon-WO0118547.314 anon-WO0172774.126
Source for merge of: osa C819
Source for merge of: osa eld
Source for merge of: osa l(3)j9C3
Additional comments
Source for merge of osa anon-WO0118547.314 anon-WO0172774.126 was sequence comparison (date:051113).
Fails to complement In(3R)Antprv1 for viability.
 
hide Other Comments
osa acts as a positive modulator of ap activity in the wing. osa mediates activation of some ap target genes and repression of others.
D.melanogaster contains two distinct brahma (BRM) complexes: the BAP complex, defined by the presence of osa protein and the absence of both polybromo and Bap170 proteins, and the PBAP complex, which contains the polybromo and Bap170 proteins but lacks the osa protein.
osa negatively regulates neural expression of ac/sc.
Area matching Drosophila EST AA201670.
brm interacts with osa to regulate the expression of the Antp P2 promoter.
osa may be involved in signalling through N or wg pathways. osa protein is expressed ubiquitously in the early embryos and in imaginal discs and is localised to the nucleus where results suggests it counteracts the effects of wg on its target genes.
Mosaic analysis in eye discs suggests a function for osa in cell proliferation and/or survival and neuronal differentiation.
Mutations in osa enhance the phentype of mutations in brm.
Mutations cannot rescue the lethality of the Df(1)ph-2-Psc1 interaction, demonstrating that trx group mutations cannot suppress Pc group phenotypes.
Dosage-dependent modifier of AntpNs.
Identification: dominant suppressor of the antenna to leg transformation in Pc2 AntpNs double heterozygotes.
Dominant suppressor of AntpNs, Pc and Pcl alleles. Recessive embryonic lethality is associated with all alleles.
osa is one of the 18 loci identified in a screen for dominant modifiers of Pc and/or Antp phenotypes. Alleles of Pc, Pcl, Scm, Dll, brm, kto, Scr and trx show clear dominant enhancement or suppression of AntpScx, whereas alleles of vtd, Vha55, Su(Pc)37D, urd, mor, skd and osa do not.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 16 )
Reported As
Symbol Synonym
anon-WO0118547.314
 
anon-WO0172774.126
 
l(3)j9C3
 
Name Synonym
Secondary FlyBase IDs
  • FBgn0003013
  • FBgn0010708
  • FBgn0011421
  • FBgn0015384
  • FBgn0046467
  • FBgn0062101
  • FBgn0259443
hide References ( 176 )
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hide Recent research papers ( 11 )
Brooks et al., 2011, Genome Res. 21(2): 193--202
Conservation of an RNA regulatory map between Drosophila and mammals. [FBrf0213079]
Curtis et al., 2011, Dev. Biol. 350(2): 534--547
Histone lysine demethylases function as co-repressors of SWI/SNF remodeling activities during Drosophila wing development. [FBrf0212876]
Di Stefano et al., 2011, Genes Dev. 25(1): 17--28
Functional antagonism between histone H3K4 demethylases in vivo. [FBrf0212709]
Gabilondo et al., 2011, Mech. Dev. 128(3-4): 208--221
A targeted genetic screen identifies crucial players in the specification of the Drosophila abdominal Capaergic neurons. [FBrf0213290]
Kirilly et al., 2011, Neuron 72(1): 86--100
Intrinsic epigenetic factors cooperate with the steroid hormone ecdysone to govern dendrite pruning in Drosophila. [FBrf0216319]
Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621]
Arancio et al., 2010, Genetics 185(1): 129--140
The nucleosome remodeling factor ISWI functionally interacts with an evolutionarily conserved network of cellular factors. [FBrf0213976]
Baig et al., 2010, Genetics 184(3): 731--744
The chromatin-remodeling protein Osa interacts with CyclinE in Drosophila eye imaginal discs. [FBrf0210399]
Gan et al., 2010, Cell Res. 20(7): 763--783
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. [FBrf0211191]
Herr et al., 2010, Dev. Biol. 344(1): 36--51
Geminin and Brahma act antagonistically to regulate EGFR-Ras-MAPK signaling in Drosophila. [FBrf0211319]
Salzer et al., 2010, Genetics 184(1): 185--197
The retinal determination gene eyes absent is regulated by the EGF receptor pathway throughout development in Drosophila. [FBrf0209690]
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All reviews listed in FlyBase were published before 2010