A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\l(2)gd1

General Information
SymbolDmel\l(2)gd1SpeciesD. melanogaster
Namelethal (2) giant discs 1Annotation symbolCG4713
Feature typeprotein_coding_geneFlyBase IDFBgn0261983
Gene Model StatusCurrent Stock availability 8 publicly available
Also Known Asl(2)gd, lgd, gd
Genomic Location
Chromosome (arm)2LRecombination map2-[41]
Cytogenetic map32D3-32D4Sequence location2L:11,106,912..11,110,851 [+]

Genomic Maps

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Automatically generated summary

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The gene lethal (2) giant discs 1 is referred to in FlyBase by the symbol Dmel\l(2)gd1 (CG4713, FBgn0261983). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: phospholipid binding. There is experimental evidence that it is involved in the biological process: negative regulation of Notch signaling pathway; wing disc morphogenesis; sensory organ development; compound eye development; regulation of endocytosis; regulation of Notch signaling pathway; imaginal disc-derived wing vein morphogenesis; sensory organ precursor cell division; intracellular protein transport; endosome transport. 33 alleles are reported. The phenotypes of these alleles are annotated with: imaginal precursor; multicellular structure; thoracic segment; adult segment; organ system subdivision; organ system; larval head segment; sense organ; cytoplasmic part; embryonic/larval imaginal precursor; external compound sense organ. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: C2 calcium-dependent membrane targeting; C2 calcium/lipid-binding domain, CaLB; C2 membrane targeting protein; Domain of unknown function DM14. Gene sequence location is 2L:11106912..11110851.

hide Phenotypic Description from the Red Book (Lindsley & Zimm 1992)
Gene/Allele symbols may differ from current usage
l(2)gd1: lethal (2) giant discs
Pupariation delayed, up to nine days in crowded cultures; pupariation is but one day in uncrowded cultures. Discs continue to grow, becoming very large with long delays. Mutant discs transplanted into normal larval hosts metamorphose; cuticular patterns normal but bristles and to a greater degree sensillae and bracts missing; unguis missing from tarsal claws; tarsi two jointed. Mutant discs yield low incidence of trans-determination.
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FB2012_01
References
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
32D3-32D4  
Left limit from in situ hybridisation (FBrf0157097) Right limit from in situ hybridisation (FBrf0157097)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
32D3-32D4  
Experimentally Determined Recombination Data
Location
2-[41]
 
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\l(2)gd1 for information on other features
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detailed view FBtr0306139 FBtr0080230 FBtr0306138 FBtr0080197 FBtr0080229 FBpp0079817 FBpp0297276 FBpp0079786 FBpp0297275 FBpp0079816 FBti0106221 FBti0038089 FBti0026212 FBti0105789 FBti0039194
Comments on Gene Model
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0080197
  3020
  816
FBtr0306138
 
  3074
  834
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0079786  
89.0  
816  
5.01  
FBpp0297275  
91.0  
834  
5.11  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
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Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
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Additional Descriptive Data
Marker for
Subcellular Localization
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Notes
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or
Untitled Document detailed view Reps-RB Reps-RA l(2)gd1-RB l(2)gd1-RA CG6201-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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A cluster of genes with similar mRNA expression dynamics across development.
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Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 14 )
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Allele of l(2)gd1ClassMutagenStocksKnown lesion
l(2)gd1EY047502 --
l(2)gd1d71 Yes
l(2)gd1J121 Yes
l(2)gd108hypomorphic allele - genetic evidence0 Yes
l(2)gd110 Yes
l(2)gd124hypomorphic allele - genetic evidence0 Yes
l(2)gd13hypomorphic allele - genetic evidence0 --
l(2)gd14hypomorphic allele - genetic evidence0 Yes
l(2)gd1d10
0 Yes
l(2)gd1d30 --
l(2)gd1rsk73a0 Yes
l(2)gd1rsk83a0 Yes
l(2)gd1SH04950 Yes
l(2)gd1unspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 19 )
For All Alleles Carried on Transgenic Constructs Show

Allele of l(2)gd1ClassMutagenStocksKnown lesion
l(2)gd1Scer\UAS.T:Ivir\HA12 Yes
l(2)gd1GD114051 Yes
l(2)gd1JF026191 Yes
l(2)gd1+tCa0 Yes
l(2)gd1NIG.4713R0 Yes
l(2)gd1Scer\UAS.cGa0 Yes
l(2)gd1Scer\UAS.cJa0 Yes
l(2)gd1Scer\UAS.T:Hsap\MYC0 Yes
l(2)gd1Scer\UAS.T:Ivir\HA0 Yes
l(2)gd1ΔC2.C.Scer\UAS.T:Zzzz\FLAG0 Yes
l(2)gd1ΔC2.C.Scer\UAS0 Yes
l(2)gd1ΔC2.N.Scer\UAS.T:Avic\GFP0 Yes
l(2)gd1ΔC2.N.Scer\UAS.T:Zzzz\FLAG0 Yes
l(2)gd1ΔC2.Scer\UAS0 Yes
l(2)gd1ΔN.C.Scer\UAS.T:Avic\GFP0 Yes
l(2)gd1ΔN.C.Scer\UAS.T:Zzzz\FLAG0 Yes
l(2)gd1ΔN.N.Scer\UAS.T:Avic\GFP0 Yes
l(2)gd1ΔN.N.Scer\UAS.T:Zzzz\FLAG0 Yes
l(2)gd1ΔN.Scer\UAS0 Yes
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Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 13 unique terms )
hide Terms Based on Experimental Evidence ( 13 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
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Protein-protein
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Interacts with
Please look at the allele data for full details of the genetic interactions
l(2)gd1 allele
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DroID - A comprehensive database of gene and protein interactions.
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Bloomington
Kyoto
VDRC
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
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Source for database identity of
Source for database merge of
Source for merge of: l(2)gd1 CG4713
Source for merge of: l(2)gd1 l(2)SH0495
Additional comments
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The l(2)gd1 product regulates N signaling in a manner that is independent of the N ligands, Dl and Ser. The genetic interaction between l(2)gd1 and Hrs, and the accumulation of N protein in subcellular puncta suggests that l(2)gd1 has a role in N protein trafficking.
dsRNA has been made from templates generated with primers directed against this gene.
l(2)gd1 is required to restrict N activity to the dorsal ventral boundary during wing development.
l(2)gd1 has a role in wing vein, eye and bristle formation.
1 allele of l(2)SH0495 recovered in a P-insertion screen.
Tumor suppressor genes act in combination to control cell proliferation. Tissue hyperplasia can be associated with ectopic expression of genes involved in pattern formation. The enhancement of leg disc duplication in l(2)gd1 mutants by ft is mediated by dpp.
The third leg disc duplication depends on the expression of wg and dpp.
Mutants display hyperplastic phenotype, with imaginal disc overgrowth.
Endocrine mechanisms responsible for the prolongation of larval life in l(2)gd1 mutants were investigated: results suggest that delayed pupariation is caused by the overgrown imaginal discs inhibiting the production or release of ecdysteroids from the endocrine system.
Mutants at l(2)gd1 exhibit hyperplastic overgrowth.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 15 )
Reported As
Symbol Synonym
l(2)giant disc
l(2)SH2 0495
l(2)SH0495
 
Name Synonym
CG4713
 
lethal(2) giant discs
lethal (2) giant discs 1
 
lethal (2) SH0495
 
Secondary FlyBase IDs
  • FBgn0002119
  • FBgn0032342
  • FBgn0065753
  • FBgn0250747
hide References ( 61 )
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hide Recent research papers ( 4 )
Blanco et al., 2010, BMC Dev. Biol. 10: 94
Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Dubatolova et al., 2010, Russ. J. Genet. 46(2): 164--169
Effect of mutations in Drosophila melanogaster tumor suppressor Merlin on proliferation and differentiation of wing cells. [FBrf0215198]
Dubatolova et al., 2010, Genetika, Moscow 46(2): 187--193
[Effect of mutations in Drosophila melanogaster tumor suppressor Merlin on proliferation and differentiation of wing cells] [FBrf0210296]
Saj et al., 2010, Dev. Cell 18(5): 862--876
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. [FBrf0210834]
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All reviews listed in FlyBase were published before 2010