A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Csk

General Information
SymbolDmel\CskSpeciesD. melanogaster
NameC-terminal Src kinaseAnnotation symbolCG42317
Feature typeprotein_coding_geneFlyBase IDFBgn0262081
Gene Model StatusCurrent Stock availability 15 publicly available
Also Known AsdCsk, CG17309, l(3)j1D8
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map86E13-86ESequence location3R:7,458,992..7,476,418 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene C-terminal Src kinase is referred to in FlyBase by the symbol Dmel\Csk (CG42317, FBgn0262081). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein tyrosine kinase activity. There is experimental evidence that it is involved in the biological process: negative regulation of growth; adherens junction maintenance; positive regulation of programmed cell death; establishment or maintenance of epithelial cell apical/basal polarity; epithelial structure maintenance; negative regulation of cell proliferation; germarium-derived egg chamber formation. 29 alleles are reported. The phenotypes of these alleles are annotated with: eye; wing disc; anterior crossvein; wing vein L4; wing; ommatidium. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Protein kinase, ATP binding site; Protein kinase, catalytic domain; Protein kinase-like domain; SH2 motif; Serine-threonine/tyrosine-protein kinase; Tyrosine-protein kinase, active site; Tyrosine-protein kinase, catalytic domain. Gene sequence location is 3R:7458992..7476418.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
86E13-86E  
Limits computationally determined from genome sequence between P{PZ}tho1&P{PZ}l(3)0462905275 and P{EP}Lk6EP886; Left limit from (method unavailable) (FBrf0126852) Right limit from (method unavailable) (FBrf0126852)  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
86E-86E  
86E14-86E20  
(determined by in situ hybridisation)  
86E16-86E19  
(determined by in situ hybridisation)  
86E14-86E20  
(determined by in situ hybridisation)  
86E14-86E20  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Csk for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0082418 FBtr0299728 FBtr0300548 FBtr0300549 FBtr0300546 FBtr0299729 FBtr0300547 FBtr0082420 FBpp0081894 FBpp0289006 FBpp0289775 FBpp0289776 FBpp0289774 FBpp0289007 FBpp0289773 FBpp0081896 FBti0101645 FBti0043354 FBti0048145 FBti0049971 FBti0065396 FBti0044488 FBti0009902 FBti0056862 FBti0102880 FBti0044044 FBti0064749 FBti0065438 FBti0035270 FBti0041134 FBti0103630 FBti0128317 FBti0006102 FBti0043105
Comments on Gene Model
Gene merge based on EST/cDNA data
Due to an oversight in the implementation of gene annotation merges, the symbols for some of the transcripts and polypeptides of this gene were changed to non-unique designations in r5.9. Although there were no conflicts within a given release, the same symbols were used for different isoforms in different releases. The affected gene product symbols have now been changed to symbols not used previously in the database; see individual transcript reports for details.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0299728
  3946
  723
FBtr0299729
  5101
  1052
FBtr0300546
  4088
  805
FBtr0300547
  4514
  723
FBtr0300548
  3952
  723
FBtr0300549
  4172
  723
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Csk-PF  
FBpp0289006  
78.0  
723  
7.50  
Csk-PG  
FBpp0289007  
113.7  
1052  
9.40  
Csk-PH  
FBpp0289773  
87.2  
805  
7.52  
Csk-PI  
FBpp0289774  
78.0  
723  
7.50  
Csk-PJ  
FBpp0289775  
78.0  
723  
7.50  
Csk-PK  
FBpp0289776  
78.0  
723  
7.50  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
The expression of this gene along with several others is induced in salivary glands in pupae at the time of head eversion. This stage is characterized by an increase in the ecdysone titer as well as large amounts of cell death in this tissue.
Marker for
Subcellular Localization
CV Term
Notes
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Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG14712-RA Csk-RF Csk-RJ Csk-RK Csk-RH Csk-RG Csk-RI Elp1-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
zonula adherens & disc epithelium proper, with Scer\GAL4ptc-559.1
hide Classical Alleles ( 20 )
For All Classical Alleles Show

Allele of CskClassMutagenStocksKnown lesion
Cskc042562 --
Cskj1D8loss of function allele2 Yes
Cskc022851 --
Cskc03290
1 --
Cskd09404
1 --
Cske031871 --
Cskf014531 --
CskNP3252
1 --
Csk50
0 --
Cskc002900 --
Cskc008020 --
Cskc03139
0 --
Cskc033320 --
CskD589N0 Yes
CskE481K0 Yes
CskQ156Stop0 Yes
CskS017909loss of function allele0 Yes
CskS030003loss of function allele0 --
Cskunspecified
0 --
CskΔ130 Yes
hide Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CskClassMutagenStocksKnown lesion
CskGD159752 Yes
CskGD93451 Yes
CskGL000441 Yes
CskKK1097311 Yes
CskdsRNA.Scer\UAS0 Yes
Cskhs.PR0 Yes
Cskhs.PS0 Yes
CskKK1084050 Yes
CskScer\UAS.cPa0 Yes
hide Aneuploid Aberrations
Not disrupted in
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
heat-shock construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
insertion of mobile activating element
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 12 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
inferred from genetic interaction with Src42A
inferred from genetic interaction with Src64B
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
non-traceable author statement
inferred from sequence or structural similarity with UniProtKB:P32577
non-traceable author statement
Biological Process
CV term
References
non-traceable author statement
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
 
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Csk allele
Gene
References
hide External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 15 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 125 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: Csk CG17309
Source for database merge of
Source for merge of: Csk CG32852
Source for merge of: Csk flik
Source for merge of: Csk flik l(3)j1D8
Source for merge of: Csk l(3)S017909
Additional comments
Annotations CG17309 and CG32852 merged as CG42317 in release 5.9 of the genome annotation.
hide Other Comments
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
Mutants have increased body size and show over-proliferation of adult tissues.
New annotation (CG32852) in release 3 of the genome annotation.
flik functions upstream of wts in a signaling pathway which negatively regulates cell proliferation during development.
Homozygous flik animals display disc overproliferation and enlarged animal phenotypes.
Lethal complementation group identified by insertion of a P{lacW} element in the 86E-87F region.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 19 )
Reported As
Symbol Synonym
flik
 
l(3)S017909
Name Synonym
CG32852
 
C-Src kinase
C-terminal Src kinase
C-terminal-Src kinase
flik
 
lethal (3) j1D8
 
lethal (3) S017909
 
Secondary FlyBase IDs
  • FBgn0023017
  • FBgn0024519
  • FBgn0037925
  • FBgn0041155
  • FBgn0052852
  • FBgn0086688
  • FBgn0086903
  • FBgn0259217
hide References ( 54 )
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hide Recent research papers ( 1 )
Saja et al., 2010, Neurobiol. Disease 40(1): 135--145
Identifying cellular pathways modulated by Drosophila palmitoyl-protein thioesterase 1 function. [FBrf0211567]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010