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Gene Dmel\CG9932

General Information
Symbol	Dmel\CG9932	Species	D. melanogaster
Name		Annotation symbol	CG9932
Feature type	protein_coding_gene	FlyBase ID	FBgn0262160
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	34A5-34A6	Sequence location	2L:13,021,866..13,060,140 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9932 (FBgn0262160). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. There is experimental evidence that it is involved in the biological process: chaeta development; wing disc development. 8 alleles are reported. The phenotypes of these alleles are annotated with: eye; trichogen cell; mesothoracic tergum; tormogen cell. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Zinc finger, C2H2; Zinc finger, C2H2-like. Gene sequence location is 2L:13021866..13060140.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 34A5-34A6   Left limit from in situ hybridisation (FBrf0128367) Right limit from in situ hybridisation (FBrf0128367)
Experimentally Determined Cytological Location
Cytogenetic map Notes References 34A5-34A6   Location inferred from insertion in: CG9932[EP2317] Left limit from in situ hybridisation (FBrf0128367) Right limit from in situ hybridisation (FBrf0128367)   (Abdelilah-Seyfried et al., 2000)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9932 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42 Gene model reviewed during 5.48 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9932-RA FBtr0089956  NM_135755   8195   2171 CG9932-RC FBtr0310277  NM_001259087   8184   1899 CG9932-RD FBtr0336616  NM_001273499   7646   1988 CG9932-RE FBtr0336617  NM_001273500   8988   2167
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9932-PA   FBpp0088895   237.0   2171   7.03     NP_609599   AAF53240 CG9932-PC   FBpp0301960   209.3   1899   6.78     NP_001246016   AFH03690 CG9932-PD   FBpp0307599   218.3   1988   6.82     NP_001260428   AGB92963 CG9932-PE   FBpp0307600   236.6   2167   6.98     NP_001260429   AGB92964
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger, C2H2-like (IPR015880)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA695053   AA698096   AA698783   AE014134 AAF53240   AF145621   AE014134 AFH03690   AE014134 AGB92963   AE014134 AGB92964   AI107079   AI113452   AQ073486   AY118834 AAM50694   AY119072   BG637689   BI608930   BI618782   BI619256   BP544074   BP544075   BP545272   BP545273   BP546104   BT023902   CK134981   CK659755   CK661800   CO157045   CO189162   CO190114   CO262366   CO266301   CO268607   CO268783   CO270401   CO274060   CO276852   CO276857   CO277518   CO279592   CO290332   CO299469   CO308350   CO310348   CO315751   CO316375   CO322837   CO325790   CO330690   CO331501   CO334144   CO338333   CO338586   CO343659   CO343777   CO344180   CO344513   CZ466230   DN154084   EC056873   EC057881   EC057906   EC059776   EC068830   EC070361   EC073046   EC083106   EC198323   EC199715   EC205137   EC205463   EC208328   EC216222   EC219784   EC220643   EC220902   EC227935   EC229880   EC238391   EC238493   EC238705   EC241252   EC242459   EC242854   EC243589   EC244067   EC255069   EC256221   EC259611   EC263102   EC263513   EC265311   EC266570   EL874466   EL874467   EL874535   EL874536   EL874607   ES688603   ES693905   EV595981   EW712750
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VK42 Q8MSG6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   yolk nucleus   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval fat body   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female  (42) head, virgin 4-day female  (46) head, virgin 20-day female  (37) head, mated 1-day female  (46) head, mated 4-day female  (48) head, mated 20-day female  (39) head, mated 1-day male  (58) head, mated 4-day male  (56) head, mated 20-day male  (60) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (86) digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering  26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering  (70) carcass, 1-day adult  (37) carcass, 4-day adult  (36) carcass, 20-day adult  (33) ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female  (42) head, virgin 4-day female  (46) head, virgin 20-day female  (37) head, mated 1-day female  (46) head, mated 4-day female  (48) head, mated 20-day female  (39) head, mated 1-day male  (58) head, mated 4-day male  (56) head, mated 20-day male  (60) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (86) digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering  26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering  (70) carcass, 1-day adult  (37) carcass, 4-day adult  (36) carcass, 20-day adult  (33) ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    15 central nervous system, larvae L3    17 central nervous system, pupae P8    24 head, virgin 1-day female    42 head, virgin 4-day female    46 head, virgin 20-day female    37 head, mated 1-day female    46 head, mated 4-day female    48 head, mated 20-day female    39 head, mated 1-day male    58 head, mated 4-day male    56 head, mated 20-day male    60 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    86 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    16 digestive system, 20-day adult    13 fat body, larvae L3 wandering    26 fat body, white prepupae    19 fat body, pupae P8    6 carcass, larvae L3 wandering    70 carcass, 1-day adult    37 carcass, 4-day adult    36 carcass, 20-day adult    33 ovary, virgin 4-day female    5 ovary, mated 4-day female    6 testis, mated 4-day male    4 accessory gland, mated 4-day male    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr  (54) embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6  (40) larva L3 puffstage 7-9  (38) white prepupae new    24 white prepupae 12hr  (34) white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP  (36) adult male 01day  (33) adult male 05day  (32) adult male 30day  (33) adult female 01day  26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr  (54) embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6  (40) larva L3 puffstage 7-9  (38) white prepupae new    24 white prepupae 12hr  (34) white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP  (36) adult male 01day  (33) adult male 05day  32 adult male 30day  (33) adult female 01day  26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    3 embryo 08-10hr    7 embryo 10-12hr    8 embryo 12-14hr    12 embryo 14-16hr    20 embryo 16-18hr    24 embryo 18-20hr    54 embryo 20-22hr    20 embryo 22-24hr    22 larva L1    14 larva L2    6 larva L3 12hr old    10 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    40 larva L3 puffstage 7-9    38 white prepupae new    24 white prepupae 12hr    34 white prepupae 24hr    16 pupae 2d postWPP    11 pupae 3d postWPP    15 pupae 4d postWPP    36 adult male 01day    33 adult male 05day    32 adult male 30day    33 adult female 01day    26 adult female 05day    11 adult female 30day    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H  (31) embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1  26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (90) wing disc ML-DmD21    10 wing disc ML-DmD32  (28) haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1  (35) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (58) tumorous blood cells mbn2    24 ovary fGS/OSS  (28) ovary OSC    19 ovary OSS  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H  31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1  26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9  (38) wing disc ML-DmD16-c3  (90) wing disc ML-DmD21    10 wing disc ML-DmD32  28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1  (35) CNS ML-DmBG1-c1  (71) CNS ML-DmBG2-c2  (58) tumorous blood cells mbn2    24 ovary fGS/OSS  28 ovary OSC    19 ovary OSS  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    19 embryonic 1182-4H    31 embryonic GM2    9 embryonic Kc167    20 embryonic S1    18 embryonic S3    8 leg disc CME L1    26 wing disc CME-W2    16 wing disc ML-DmD8    23 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    90 wing disc ML-DmD21    10 wing disc ML-DmD32    28 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    12 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    71 CNS ML-DmBG2-c2    58 tumorous blood cells mbn2    24 ovary fGS/OSS    28 ovary OSC    19 ovary OSS    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (32) cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3  (28) Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3  28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    32 cold shock, 4-day adult    24 heat shock, 4-day adult    13 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    14 Copper 0.5 mM 12 hrs, larvae L3    28 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    18 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    5 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    14 Caffeine 25 mg/ml 48 hrs, 4-day adult    24 Paraquat 5 mM 48 hrs, 4-day adult    18 Paraquat 10 mM 48 hrs, 4-day adult    22 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_18 mE1_20_mRNA_expression_cluster_15
External Data & Images
Linkouts	BDGP expression data • IP14766
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4en-e16E CG9932EP2317 lethal, with Scer\GAL4hs.2sev CG9932EP2317 viable, with Scer\GAL4pnr-MD237 CG9932GD14726 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 CG9932GD14726 visible, with Scer\GAL4ey.PH CG9932EP2317 visible, with Scer\GAL4sca-537.4 CG9932EP2317 Phenotype manifest in Allele eye, with Scer\GAL4ey.PH CG9932EP2317 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG9932GD14726 tormogen cell, with Scer\GAL4sca-537.4 CG9932EP2317 trichogen cell, with Scer\GAL4sca-537.4 CG9932EP2317
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of CG9932 Class Mutagen Stocks Known lesion CG9932c00144 piggyBac transposase 2 -- CG9932d05874 1 -- CG9932f00780 1 -- CG9932MB01281 1 -- CG9932EP2317 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9932 Class Mutagen Stocks Known lesion CG9932GD14726 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9932KK103450 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9932NIG.9932R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7055 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD14726} NA P{KK103450} NA P{NIG.9932R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}CG9932c00144 NA PBac{WH}CG9932f00780 NA insertion of mobile activating element P{EP}CG9932EP2317 NA P{XP}CG9932d05874 NA insertion of enhancer trap binary system Mi{ET1}CG9932MB01281 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
chaeta development inferred from genetic interaction with Chi (Bronstein et al., 2010) wing disc development inferred from genetic interaction with Bx (Bronstein et al., 2010)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene   gene_with_edited_transcript (Graveley et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG9932 - Gen anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9932 allele Gene References Ef4AEP2317 CycE (Tseng and Hariharan, 2002) pnr (Pena-Rangel et al., 2002)
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0262160 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34701
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6F7P4D Dipteran inclusive ortholog search EOG61JZMC Insect inclusive ortholog search EOG61RNPS Arthropod inclusive ortholog search EOG6R7SRJ Metazoa inclusive ortholog search EOG6PGJSJ
Orthologs in Drosophila Species (EOG6F7P4D)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9932     Drosophila simulans   Dsim\GD22089     Drosophila simulans   Dsim\GD22090     Drosophila sechellia   Dsec\GM25899     Drosophila erecta   Dere\GG10230 Y   Drosophila yakuba   Dyak\GE11950 Y   Drosophila ananassae   Dana\GF15648 Y   Drosophila ananassae   Dana\GF13999     Drosophila pseudoobscura pseudoobscura   Dpse\GA25395     Drosophila pseudoobscura pseudoobscura   Dpse\GA22134 Y   Drosophila persimilis   Dper\GL24778 Y   Drosophila persimilis   Dper\GL14946     Drosophila willistoni   Dwil\GK14812 Y   Drosophila virilis   Dvir\GJ11023     Drosophila virilis   Dvir\Ubx     Drosophila virilis   Dvir\GJ11036 Y   Drosophila mojavensis   Dmoj\GI13286     Drosophila mojavensis   Dmoj\GI21204 Y   Drosophila grimshawi   Dgri\GH10347 Y
Orthologs in non-Drosophila Dipterans (EOG61JZMC)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Anopheles gambiae Malaria mosquito  Agam\AGAP007308 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004784 Y
Orthologs in non-Dipteran Insects (EOG61RNPS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC410108 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13215 Y Atta cephalotes Leafcutter ant  Acep\ACEP26650 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO16131 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12515 Y Linepithema humile Argentine ant  Lhum\LH15841 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB16046 Y Solenopsis invicta Red fire ant  Sinv\SINV22804 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI48834 Y Bombyx mori Silkmoth  Bmor\BGIBMGA005980 Y Pediculus humanus Human body louse  Phum\PHUM249040 Y Pediculus humanus Human body louse  Phum\PHUM249050 Y Tribolium castaneum Red flour beetle  Tcas\TC014806 Y
Orthologs in non-Insect Arthropods (EOG6R7SRJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_268813 Y Daphnia pulex Water flea  Dpux\tefa Y Ixodes scapularis Deer tick  Isca\ISCW008027 Y
Orthologs in non-Arthropod Metazoa (EOG6PGJSJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\C28G1.4 Y Caenorhabditis elegans Nematode  Cele\spr-4 Y
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (9) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila erecta Dere\GG10230 Drosophila yakuba Dyak\GE11950 Drosophila ananassae Dana\GF15648 Drosophila pseudoobscura pseudoobscura Dpse\GA22134 Drosophila persimilis Dper\GL24778 Drosophila willistoni Dwil\GK14812 Drosophila virilis Dvir\GJ11036 Drosophila mojavensis Dmoj\GI21204 Drosophila grimshawi Dgri\GH10347
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	10013 w1118; PBac{PB}CG9932c00144/CyO 23044 y1 w67c23; Mi{ET1}CG9932MB01281
Harvard	- P{XP}CG9932d05874 - PBac{PB}CG9932c00144 - PBac{WH}CG9932f00780
VDRC	v107846 P{KK103450}VIE-260B v45686 w1118 P{GD14726}v45686 v45687 w1118 P{GD14726}v45687
Genomic Clones ( 2 )
	BACR27F17 BACR48D10 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 83 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH03937 GM02023 IP14766 LP08967
Other clones	DPiM_LP08967
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH06371 GH09733 HL03767 LP17733 LP21530 RH49689 RH50255
Other clones	1163 1183 7146 14956 21147 35736 47431 159096 161160 165114 191130 193072 273257 283541 292342 296471 299738 300310 CK01.1D.H10 CK01.22C.F11 CK01.53D.C11 CK01.55D.B10 CK01.57B.E3 CK01.94D.F9 CK01.100D.G4 CK01.108A.G1 CK01.109B.G12 CK01.128C.G2 Dmel_neb_015821_0703_1695 EC255069 EC256221 EC259611 EK043312 EK046618 EK073723 EK085158 EK092125 EK092653 EK098760 EK113011 EK122226 EK122234 EK125359 EK135438 EK145934 EK174733 EK175517 EK189034 EK197449 EK221304 EK257704 EK262359 EK264754 EK295926 EK300001 EK309240 EN09828 EN16523 EN17133 EP17761 EP18023 EP18811 EP19419 FGC023H10 FGC030D07 FGH102H04 HL05680 IP14466 IP14566 IP14666 RH13650
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0262160 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34701
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9932 Ef4A (Marygold, 2010.7.30)
Additional comments	FlyBase Curator comment: "Elongation factor 4A (Ef4A)" (FBgn0043346) existed as a separate (sequence unlocalized) gene in FlyBase through to the FB2010_06 release. The gene was originally created through curation of FBrf0128367, in which it was associated with the 'EP2317' insertion. However, this association was incorrect and the proposed gene symbol/name was therefore inappropriate. The gene associated with 'EP2317' is in fact CG9932, and the data previously captured under 'Ef4A' has now been transferred to CG9932. (Marygold, 2010.7.30)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135755 NM_001259087 NM_001273499 NM_001273500 RefSeq (Proteins) • NP_609599 NP_001246016 NP_001260428 NP_001260429 DDBJ / EMBL / GenBank • AA695053 AAF53240 AAM50694 AFH03690 AGB92963 AGB92964 AQ073486 AY118834 CZ466230 Entrez Gene - A searchable database of RefSeq genes. • 34701 UniProtKB/TrEMBL • Q8MSG6 Q9VK42
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger, C2H2-like (IPR015880) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • IP14766
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0262160 DRSC - Results from RNAi screens. • FBgn0262160 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0262160 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34701 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34701 modMine - Data generated by the modENCODE project. • FBgn0262160
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG9932 (Marygold, 2010.7.30, Ayroles et al., 2009, Keleman et al., 2009.8.5, González et al., 2010, Bronstein et al., 2010, Burgler and Macdonald, 2005, Douglas et al., 2011, Mackay et al., 2012, Japanese National Institute of Genetics, 2012.5.21) Ef4A   elF-4A (Abdelilah-Seyfried et al., 2000) EP2317 (Tseng and Hariharan, 2002)
Name Synonym	Elongation factor 4a (Abdelilah-Seyfried et al., 2000) elongation factor 4A (Abdelilah-Seyfried et al., 2000)
Secondary FlyBase IDs
	FBgn0032469 FBgn0043346
References ( 31 )
Generate a list of	All references relating to this gene ( 31 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 4 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Mackay et al., 2012, Nature 482(7384): 173--178 The Drosophila melanogaster Genetic Reference Panel. [FBrf0217434] Douglas et al., 2011, Proc. Biol. Sci. 278(1704): 333--338 How the insect immune system interacts with an obligate symbiotic bacterium. [FBrf0212672] Show all research papers ...