FB2020_06, released Dec 22, 2020

Gene: Dmel\mir-92a

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General Information
Symbol
Dmel\mir-92a
Species
D. melanogaster
Name
mir-92a stem loop
Annotation Symbol
CR42955
Feature Type
miRNA_gene
FlyBase ID
FBgn0262411
Gene Model Status
Current
Stock Availability
6 publicly available
Other Summaries
Also Known As

dme-mir-92a, miR-92

Key Links
Genomic Location
Cytogenetic map
Sequence location
3R:25,646,506..25,646,600 [+]
Recombination map

3-88

RefSeq locus
NT_033777 REGION:25646506..25646600
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (6 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
enables mRNA 3'-UTR binding
inferred from direct assay
(Chen and Rosbash, 2017, Eulalio et al., 2009)
enables mRNA binding involved in posttranscriptional gene silencing
inferred from direct assay
(Chen and Rosbash, 2017, Eulalio et al., 2009)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (4 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
involved_in deadenylation involved in gene silencing by miRNA
inferred from direct assay
(Eulalio et al., 2009)
involved_in head involution
inferred from mutant phenotype
(Leaman et al., 2005)
involved_in miRNA mediated inhibition of translation
inferred from direct assay
(Chen and Rosbash, 2017)
involved_in positive regulation of circadian sleep/wake cycle, sleep
inferred from mutant phenotype
(Chen and Rosbash, 2017)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    3
    Number of Unique Polypeptides
    0

    Please see the JBrowse view of Dmel\mir-92a for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model

    Locations and structures of miRNA models as mapped by miRBase (FBrf0220601).

    Conserved: found throughout the Drosophila genus (FBrf0230987).

    Sequence Ontology: Class of Gene
    miRNA_gene
    (FlyBase Genome Annotators, 2010, Sempere et al., 2003, Stark et al., 2003, Stark et al., 2003)
    nuclear_gene
    (FlyBase Genome Annotators, 2010, Sempere et al., 2003, Stark et al., 2003, Stark et al., 2003)
    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    mir-92a-RA
    FBtr0304336
    NR_048487
    22
    mir-92a-RB
    FBtr0472719
    22
    mir-92a-RM
    FBtr0304335
    NR_048486
    95
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    miRBase - A searchable database of published miRNA sequences and annotation.
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
      Mapped Features

      Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\mir-92a using the Feature Mapper tool.

      External Data
      Crossreferences
      Linkouts
      Expression Data
      Expression Summary Ribbons
      Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
      For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
      Transcript Expression
      in situ
      Stage
      Tissue/Position (including subcellular localization)
      Reference
      embryonic stage 8 -- 11
      embryonic brain
      (Aboobaker et al., 2005)
      ventral nerve cord | restricted
      (Aboobaker et al., 2005)
      pupal stage P6
      mesothoracic leg
      (Arif et al., 2013)
      northern blot
      Stage
      Tissue/Position (including subcellular localization)
      Reference
      embryonic stage -- adult stage
      (Sempere et al., 2003)
      Additional Descriptive Data

      Northern analysis of 24 microRNAs showed that mir-92a transcript can be detected at low levels throughout development with increased expression in embryos and at the larval to pupal transition.

      (Sempere et al., 2003)
      Marker for
       
      Subcellular Localization
      CV Term
      Polypeptide Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Evidence
      References
      Expression Deduced from Reporters
      High-Throughput Expression Data
      Associated Tools

      GBrowse - Visual display of RNA-Seq signals

      View Dmel\mir-92a in GBrowse 2
      RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
      Bulk Downloads
      RNA-Seq RPKM values for all genes
      Reference
      See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
      Developmental Proteome: Life Cycle
      Developmental Proteome: Embryogenesis
      External Data and Images
      Alleles, Insertions, and Transgenic Constructs
      Classical and Insertion Alleles ( 2 )
      For All Classical and Insertion Alleles Show
       
      Other relevant insertions
      Transgenic Constructs ( 7 )
      For All Alleles Carried on Transgenic Constructs Show
      Transgenic constructs containing/affecting coding region of mir-92a
      Transgenic constructs containing regulatory region of mir-92a
      Deletions and Duplications ( 0 )
      Phenotypes
      Orthologs
      Downloads
      Download All DIOPT Orthologs
      Download All OrthoDB Orthologs
      Human Orthologs (via DIOPT v8.0)
      Homo sapiens (Human) (0)
      No records found.
      Model Organism Orthologs (via DIOPT v8.0)
      Mus musculus (laboratory mouse) (0)
      No records found.
      Rattus norvegicus (Norway rat) (0)
      No records found.
      Xenopus tropicalis (Western clawed frog) (0)
      No records found.
      Danio rerio (Zebrafish) (0)
      No records found.
      Caenorhabditis elegans (Nematode, roundworm) (0)
      No records found.
      Arabidopsis thaliana (thale-cress) (0)
      No records found.
      Saccharomyces cerevisiae (Brewer's yeast) (0)
      No records found.
      Schizosaccharomyces pombe (Fission yeast) (0)
      No records found.
      Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( None identified )
      No orthologies identified
      Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( None identified )
      No non-Drosophilid orthologies identified
      Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( None identified )
      No non-Dipteran orthologies identified
      Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )
      No non-Insect Arthropod orthologies identified
      Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
      No non-Arthropod Metazoa orthologies identified
      Paralogs
      Downloads
      Download All DIOPT Paralogs
      Paralogs (via DIOPT v8.0)
      Drosophila melanogaster (Fruit fly) (0)
      No records found.
      Human Disease Associations
      FlyBase Human Disease Model Reports
        Disease Model Summary Ribbon
        Disease Ontology (DO) Annotations
        Models Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Evidence
        References
        Potential Models Based on Orthology ( 0 )
        Human Ortholog
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
        Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
        Homo sapiens (Human)
        Gene name
        Score
        OMIM
        OMIM Phenotype
        DO term
        Complementation?
        Transgene?
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        Summary of Genetic Interactions
        esyN Network Diagram
        esyN Network Key:
        Suppression
        Enhancement
        View in Interactions Browser
        Please look at the allele data for full details of the genetic interactions
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        mir-92a
        suppressible
        sha
        (Schertel et al., 2012)
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Linkouts
        DroID - A comprehensive database of gene and protein interactions.
        Pathways
        Signaling Pathways (FlyBase)
        Metabolic Pathways
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        3R
        Recombination map

        3-88

        Cytogenetic map
        96E6-96E6
        Sequence location
        3R:25,646,506..25,646,600 [+]
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        96E6-96E6
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        96F-96F
        (Sempere et al., 2003)
        Experimentally Determined Recombination Data
        Location

        3-88

        (FlyBase, 2016)

        3-86.6

        (Comeron et al., 2012)
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (6)
        Genomic Clones (19)
        cDNA Clones (0)
         

        Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

        cDNA clones, fully sequenced
        BDGP DGC clones
          Other clones
            Drosophila Genomics Resource Center cDNA clones

            For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

              cDNA Clones, End Sequenced (ESTs)
              BDGP DGC clones
                Other clones
                  RNAi and Array Information
                  Linkouts
                  GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                  Antibody Information
                  Laboratory Generated Antibodies
                   
                  Commercially Available Antibodies
                   
                  Other Information
                  Relationship to Other Genes
                  Source for database identify of
                  Source for database merge of
                  Additional comments

                  The annotation for mir-92a has been changed in release 5.31 of the genome annotation, so that instead of representing a mature miRNA it now represents the precursor stem loop pre-miRNA. The symbol of the annotation has been changed from CR33571 to CR42955 to reflect this change.

                  (FlyBase Genome Annotators, 2010)
                  Other Comments

                  New annotation (CR33571) in release 4.1 of the genome annotation.

                  (FlyBase Genome Annotators, 2005)
                  Origin and Etymology
                  Discoverer
                  Etymology
                  Identification
                  External Crossreferences and Linkouts ( 12 )
                  Sequence Crossreferences
                  NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
                  RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
                  RNAcentral - A comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms
                  Other crossreferences
                  FlyMine - An integrated database for Drosophila genomics
                  GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                  KEGG Genes - Molecular building blocks of life in the genomic space.
                  miRBase - A searchable database of published miRNA sequences and annotation.
                  modMine - A data warehouse for the modENCODE project
                  Linkouts
                  DroID - A comprehensive database of gene and protein interactions.
                  Synonyms and Secondary IDs (12)
                  Reported As
                  Symbol Synonym
                  CR33571
                  (FlyBase Genome Annotators, 2005)
                  CR42955
                  (FlyBase Genome Annotators, 2010)
                  MIR-92
                  (Ylla et al., 2016)
                  dme-miR-92a
                  (Volin et al., 2018, Towler et al., 2015)
                  dme-mir-92a
                  (Ninova et al., 2014, miRBase, 2013, Reinhardt et al., 2012, Huang and Gu, 2007, Gesellchen and Boutros, 2004)
                  mIR-92a
                  (Lu et al., 2008)
                  miR-92
                  (Xia and Zhang, 2014, Leaman et al., 2005, Sempere et al., 2003)
                  miR-92A
                  (Kuzin et al., 2007)
                  miR-92a
                  (Guven-Ozkan et al., 2020, Goodwin et al., 2018, Kittelmann et al., 2018, Atilano et al., 2017, Picao-Osorio et al., 2017, Shu et al., 2017, Xiong et al., 2016, Fulga et al., 2015, Suh et al., 2015, Yuva-Aydemir et al., 2015, Fu et al., 2014, Yatsenko et al., 2014, Nesler et al., 2013, Pancratov et al., 2013, Schertel et al., 2012, Liu et al., 2011, Patraquim et al., 2011, Ghildiyal et al., 2010, Thomsen et al., 2010, Eulalio et al., 2009, Ibáñez-Ventoso et al., 2008, Zhao et al., 2008, Rehwinkel et al., 2006, Leaman, 2005, Stark et al., 2005, Rehmsmeier et al., 2004, Lai et al., 2003, Stark et al., 2003, Stark et al., 2003)
                  mir-92
                  mir-92a
                  (Hanyu-Nakamura et al., 2019, Niu et al., 2019, Agarwal et al., 2018, Zhao et al., 2018, Chen and Rosbash, 2017, Mohammed and Lai, 2016.2.8, Arif et al., 2015, Chen et al., 2014, Ninova et al., 2014, Wang et al., 2014, Yeh et al., 2014, Arif et al., 2013, Bejarano et al., 2012, Schertel et al., 2012, Szuplewski et al., 2012, FlyBase Genome Annotators, 2010, Neumuller et al., 2008, Okamura et al., 2008, Ruby et al., 2007)
                  Name Synonyms
                  miR-92a
                  (Rehmsmeier et al., 2004)
                  mir-92
                  mir-92a
                  mir-92a stem loop
                  Secondary FlyBase IDs
                  • FBgn0067682
                  • FBgn0067335
                  • FBgn0262248
                  Datasets (0)
                  Study focus (0)
                  Experimental Role
                  Project
                  Project Type
                  Title
                  References (76)