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Gene Dmel\mir-13a

General Information
Symbol	Dmel\mir-13a	Species	D. melanogaster
Name	mir-13a stem loop	Annotation symbol	CR42984
Feature type	miRNA_gene	FlyBase ID	FBgn0262429
Gene Model Status	Current	Stock availability	None publicly available
Also Known As	miR-13
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	88F4-88F4	Sequence location	3R:11,243,264..11,243,338 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene mir-13a stem loop is referred to in FlyBase by the symbol Dmel\mir-13a (CR42984, FBgn0262429). It is a miRNA_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript. Gene sequence location is 3R:11243264..11243338.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN40624 BKN42664
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 88F4-88F4   Limits computationally determined from genome sequence between P{lacW}MRG15j6A3 and P{PZ}l(3)0653606536
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\mir-13a for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   mir-13a-RM FBtr0304396     75   mir-13a-RA FBtr0304397     22
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences	miRBase - the home of microRNA data • MI0000133
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name AJ421773
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage -- adult stage     (Sempere et al., 2003)
Additional Descriptive Data
	Northern analysis of 24 microRNAs showed that a number of them were expressed constituitively throughout development. (Sempere et al., 2003)
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of mir-13a Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of mir-13a Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
polysome non-traceable author statement (Caudy et al., 2002)
Sequence Ontology: Class of Gene
	miRNA_gene (Lagos-Quintana et al., 2001, FlyBase Genome Annotators, 2010) nuclear_gene (Lagos-Quintana et al., 2001, FlyBase Genome Annotators, 2010)
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions mir-13a allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0262429
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\mir-13a
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR17K19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 170871 3346153
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	The annotation for mir-13a has been changed in release 5.31 of the genome annotation, so that instead of representing a mature miRNA it now represents the precursor stem loop pre-miRNA. The symbol of the annotation has been changed from CR32931 to CR42984 to reflect this change. (FlyBase Genome Annotators, 2010)
Other Comments
	New annotation (CR33566) in release 4.1 of the genome annotation. (FlyBase Genome Annotators, 2005) mir-2c, mir-13a and mir-13b-1 are clustered within 400bp in 87E7--88F4. (Sempere et al., 2003) New annotation (CR32931) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • AJ421773 Entrez Gene - A searchable database of RefSeq genes. • 3772250 3772484
Other Crossreferences
	miRBase - the home of microRNA data • MI0000133
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0262429 FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0262429 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 170871 3346153 modMine - Data generated by the modENCODE project. • FBgn0262429
Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym	CR32931   CR33566 (FlyBase Genome Annotators, 2005) CR42984 (FlyBase Genome Annotators, 2010, ) miR-13 (Alvarez-Garcia and Miska, 2005, Gesellchen and Boutros, 2004, Sempere et al., 2003, Behura, 2007, Leaman et al., 2005, Enright et al., 2003) mir-13a (FlyBase Genome Annotators, 2010, Neumuller et al., 2008, Ruby et al., 2007) miR-13a (Boutla et al., 2003, Lai et al., 2003, Schwarz et al., 2003, Stark et al., 2003, Stark et al., 2003, Rehwinkel et al., 2006) miR13a (Caudy et al., 2002) MiR-13a (Yang et al., 2009) mir-13a* (Aravin et al., 2003) mir-13aS
Name Synonym	mir-13a   mir-13aS   mir-13a stem loop
Secondary FlyBase IDs
	FBgn0046830 FBgn0082180 FBgn0262277
References ( 24 )
Generate a list of	All references relating to this gene ( 24 )
List References by type	Research paper  ( 15 ) Supplementary material  ( 3 ) Review  ( 3 ) FlyBase analysis  ( 3 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2010 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...