General Information Symbol Dmel\ Rab8Species D. melanogaster Name Rab8 Annotation symbol CG8287 Feature type protein_coding_gene FlyBase ID FBgn0262518 Gene Model Status Current Stock availability 14 publicly
available Also Known As dm-Rab8, DmRab8, DRab8 Genomic Location Chromosome (arm) 3L Recombination map Cytogenetic map 76D2-76D3 Sequence location 3L:19,860,588..19,864,178 [-]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
Rab8 is referred to in FlyBase by the symbol
Dmel\Rab8 (CG8287, FBgn0262518). It is a protein_coding_gene from
Drosophila melanogaster . Based on sequence similarity, it is predicted to have
molecular function : GTPase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the
biological process : protein transport; small GTPase mediated signal transduction.
13 alleles are reported . No phenotypic data is available. It has
3 annotated transcripts and
3 annotated polypeptides .
Protein features are: Small GTP-binding protein domain; Small GTPase superfamily; Small GTPase superfamily, Rab type. Gene sequence location is
3L:19860588..19864178 .
User Contributed Data
Recent Updates
Description
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It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
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This section does not currently display links that were removed or gene model changes.
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FB2013_03
Controlled Vocabulary Terms
FB2013_02
All updates
Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.40
Gene model reviewed during 5.45
Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences
domains - A database of protein families, domains, and functional sites
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences Expression Data Transcript ExpressionComment: maternally deposited
Comment: anlage in statu nascendi
Comment: reported as plasmatocytes anlage
Additional Descriptive Data
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
Linear, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(50)
central nervous system, larvae L3
(47)
central nervous system, pupae P8
(60)
head, virgin 1-day female
(28)
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
(30)
head, mated 4-day male
(33)
head, mated 20-day male
(40)
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
(30)
digestive system, larvae L3 wandering
(39)
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
(36)
fat body, pupae P8
(39)
carcass, larvae L3 wandering
(40)
carcass, 1-day adult
(37)
carcass, 4-day adult
(38)
carcass, 20-day adult
(29)
ovary, virgin 4-day female
(77)
ovary, mated 4-day female
(70)
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
(50)
central nervous system, larvae L3
(47)
central nervous system, pupae P8
(60)
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
(33)
head, mated 20-day male
(40)
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
(39)
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
(36)
fat body, pupae P8
(39)
carcass, larvae L3 wandering
(40)
carcass, 1-day adult
(37)
carcass, 4-day adult
(38)
carcass, 20-day adult
29
ovary, virgin 4-day female
(77)
ovary, mated 4-day female
(70)
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
50
central nervous system, larvae L3
47
central nervous system, pupae P8
60
head, virgin 1-day female
28
head, virgin 4-day female
26
head, virgin 20-day female
21
head, mated 1-day female
22
head, mated 4-day female
24
head, mated 20-day female
21
head, mated 1-day male
30
head, mated 4-day male
33
head, mated 20-day male
40
salivary gland, larvae L3 wandering
18
salivary gland, white prepupae
30
digestive system, larvae L3 wandering
39
digestive system, 1-day adult
16
digestive system, 4-day adult
21
digestive system, 20-day adult
17
fat body, larvae L3 wandering
11
fat body, white prepupae
36
fat body, pupae P8
39
carcass, larvae L3 wandering
40
carcass, 1-day adult
37
carcass, 4-day adult
38
carcass, 20-day adult
29
ovary, virgin 4-day female
77
ovary, mated 4-day female
70
testis, mated 4-day male
22
accessory gland, mated 4-day male
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Tissue
Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(68)
embryo 02-04hr
(75)
embryo 04-06hr
(46)
embryo 06-08hr
(49)
embryo 08-10hr
(60)
embryo 10-12hr
(53)
embryo 12-14hr
(60)
embryo 14-16hr
(37)
embryo 16-18hr
(41)
embryo 18-20hr
26
embryo 20-22hr
(30)
embryo 22-24hr
(42)
larva L1
22
larva L2
(30)
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
(32)
larva L3 puffstage 7-9
(47)
white prepupae new
(50)
white prepupae 12hr
(50)
white prepupae 24hr
(49)
pupae 2d postWPP
(48)
pupae 3d postWPP
(29)
pupae 4d postWPP
16
adult male 01day
(33)
adult male 05day
(35)
adult male 30day
(27)
adult female 01day
(33)
adult female 05day
(53)
adult female 30day
(48)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(68)
embryo 02-04hr
(75)
embryo 04-06hr
(46)
embryo 06-08hr
(49)
embryo 08-10hr
(60)
embryo 10-12hr
(53)
embryo 12-14hr
(60)
embryo 14-16hr
(37)
embryo 16-18hr
(41)
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
(42)
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
(47)
white prepupae new
(50)
white prepupae 12hr
(50)
white prepupae 24hr
(49)
pupae 2d postWPP
(48)
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
(33)
adult male 05day
(35)
adult male 30day
27
adult female 01day
(33)
adult female 05day
(53)
adult female 30day
(48)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
68
embryo 02-04hr
75
embryo 04-06hr
46
embryo 06-08hr
49
embryo 08-10hr
60
embryo 10-12hr
53
embryo 12-14hr
60
embryo 14-16hr
37
embryo 16-18hr
41
embryo 18-20hr
26
embryo 20-22hr
30
embryo 22-24hr
42
larva L1
22
larva L2
30
larva L3 12hr old
20
larva L3 puffstage 1-2
23
larva L3 puffstage 3-6
32
larva L3 puffstage 7-9
47
white prepupae new
50
white prepupae 12hr
50
white prepupae 24hr
49
pupae 2d postWPP
48
pupae 3d postWPP
29
pupae 4d postWPP
16
adult male 01day
33
adult male 05day
35
adult male 30day
27
adult female 01day
33
adult female 05day
53
adult female 30day
48
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
Linear, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(67)
Schneider line 2 Sg4
(47)
embryonic 1182-4H
(44)
embryonic GM2
(86)
embryonic Kc167
(51)
embryonic S1
(48)
embryonic S3
(45)
leg disc CME L1
(52)
wing disc CME-W2
(45)
wing disc ML-DmD8
(35)
wing disc ML-DmD9
(33)
wing disc ML-DmD16-c3
(40)
wing disc ML-DmD21
23
wing disc ML-DmD32
(34)
haltere disc ML-DmD17-c3
(42)
eye-antennal disc ML-DmD11
(29)
antennal disc ML-DmD20-c5
(35)
mixed discs ML-DmD4-c1
(59)
CNS ML-DmBG1-c1
(44)
CNS ML-DmBG2-c2
(40)
tumorous blood cells mbn2
(63)
ovary fGS/OSS
(30)
ovary OSC
(36)
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
(67)
Schneider line 2 Sg4
(47)
embryonic 1182-4H
(44)
embryonic GM2
(86)
embryonic Kc167
(51)
embryonic S1
(48)
embryonic S3
(45)
leg disc CME L1
(52)
wing disc CME-W2
(45)
wing disc ML-DmD8
(35)
wing disc ML-DmD9
(33)
wing disc ML-DmD16-c3
(40)
wing disc ML-DmD21
23
wing disc ML-DmD32
(34)
haltere disc ML-DmD17-c3
(42)
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
(35)
mixed discs ML-DmD4-c1
(59)
CNS ML-DmBG1-c1
(44)
CNS ML-DmBG2-c2
(40)
tumorous blood cells mbn2
(63)
ovary fGS/OSS
30
ovary OSC
(36)
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
67
Schneider line 2 Sg4
47
embryonic 1182-4H
44
embryonic GM2
86
embryonic Kc167
51
embryonic S1
48
embryonic S3
45
leg disc CME L1
52
wing disc CME-W2
45
wing disc ML-DmD8
35
wing disc ML-DmD9
33
wing disc ML-DmD16-c3
40
wing disc ML-DmD21
23
wing disc ML-DmD32
34
haltere disc ML-DmD17-c3
42
eye-antennal disc ML-DmD11
29
antennal disc ML-DmD20-c5
35
mixed discs ML-DmD4-c1
59
CNS ML-DmBG1-c1
44
CNS ML-DmBG2-c2
40
tumorous blood cells mbn2
63
ovary fGS/OSS
30
ovary OSC
36
ovary OSS
19
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Cell Line
Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
(36)
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
(38)
Cadmium 50 mM 48 hrs, 4-day adult
(37)
Cadmium 100 mM 48 hrs, 4-day adult
(57)
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
(58)
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
(47)
Ethanol 2.5% 3 hrs, larvae L3
(52)
Ethanol 5% 3 hrs, larvae L3
(34)
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
(27)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(65)
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
(56)
Paraquat 10 mM 48 hrs, 4-day adult
(50)
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
(36)
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
(38)
Cadmium 50 mM 48 hrs, 4-day adult
(37)
Cadmium 100 mM 48 hrs, 4-day adult
(57)
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
(58)
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
(47)
Ethanol 2.5% 3 hrs, larvae L3
(52)
Ethanol 5% 3 hrs, larvae L3
(34)
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(65)
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
(56)
Paraquat 10 mM 48 hrs, 4-day adult
(50)
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
17
cold shock, 4-day adult
15
heat shock, 4-day adult
36
Cadmium 50 mM 6 hrs, larvae L3
17
Cadmium 50 mM 12 hrs, larvae L3
38
Cadmium 50 mM 48 hrs, 4-day adult
37
Cadmium 100 mM 48 hrs, 4-day adult
57
Copper 0.5 mM 12 hrs, larvae L3
8
Copper 15 mM 48 hrs, 4-day adult
58
Zinc 5 mM 12 hrs, larvae L3
11
Zinc 4.5 mM 48 hrs, 4-day adult
47
Ethanol 2.5% 3 hrs, larvae L3
52
Ethanol 5% 3 hrs, larvae L3
34
Ethanol 10% 3 hrs, larvae L3
22
Caffeine 1.5 mg/ml 4 hrs, larvae L3
27
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
65
Caffeine 25 mg/ml 48 hrs, 4-day adult
25
Paraquat 5 mM 48 hrs, 4-day adult
56
Paraquat 10 mM 48 hrs, 4-day adult
50
Rotenone 2 μg 12 hrs, larvae L3
23
Rotenone 8 μg 12 hrs, larvae L3
13
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 6 ) For All Classical Alleles Show Alleles Carried on Transgenic Constructs
( 7 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Disrupted in Not disrupted in Transgenic Constructs & Insertions
Transgenic Constructs Insertions Gene Ontology: Function, Process
& Cellular Component ( 7 unique terms ) Terms Based on
Experimental Evidence ( 2 terms ) Molecular Function ( 0 terms) Biological Process ( 0 terms) Cellular Component inferred from direct assay
inferred from direct assay
Terms Based on Predictions or
Assertions ( 5 terms ) Molecular Function inferred from sequence or structural similarity
non-traceable author statement
Biological Process Cellular Component inferred from sequence or structural similarity with
Rab11 Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
protein-protein anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A comprehensive database of gene and protein interactions.
Orthologs
OrthoDB Orthologs (144)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
Orthologs in Drosophila Species
(EOG6B8K0D )
Drosophila melanogaster
fruit fly
Drosophila pseudoobscura pseudoobscura
Y
Orthologs in non-Drosophila Dipterans
(EOG61NTW5 )
Aedes aegypti
Yellow fever mosquito
Anopheles gambiae
Malaria mosquito
Culex quinquefasciatus
Southern house mosquito
Orthologs in non-Dipteran Insects
(EOG68W9Z6 )
Apis mellifera
Western honey bee
Amel\GB55960
Y
Apis mellifera
Western honey bee
Amel\Ame.1740
Y
Apis mellifera
Western honey bee
Amel\GB52842
Y
Apis mellifera
Western honey bee
Amel\Rab10
Y
Apis mellifera
Western honey bee
Amel\Ame.3590
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG011245
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG005975
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG020155
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG001698
Y
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG013952
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH18187
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH21022
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH10637
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH14030
Y
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH11347
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP16947
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP19570
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP13274
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP10256
Y
Atta cephalotes
Leafcutter ant
Acep\ACEP16079
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO16737
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO17648
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO17855
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO21657
Y
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO20753
Y
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL19470
Y
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL18252
Y
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL17491
Y
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL20213
Y
Linepithema humile
Argentine ant
Lhum\LH12803
Y
Linepithema humile
Argentine ant
Lhum\LH20433
Y
Linepithema humile
Argentine ant
Lhum\LH20039
Y
Linepithema humile
Argentine ant
Lhum\LH19264
Y
Linepithema humile
Argentine ant
Lhum\LH15342
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB16634
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB12411
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB18086
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB17524
Y
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB22967
Y
Solenopsis invicta
Red fire ant
Sinv\SINV10886
Y
Solenopsis invicta
Red fire ant
Sinv\SINV24119
Y
Solenopsis invicta
Red fire ant
Sinv\SINV13339
Y
Solenopsis invicta
Red fire ant
Sinv\SINV19525
Y
Solenopsis invicta
Red fire ant
Sinv\SINV17605
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Acyrthosiphon pisum
Pea aphid
Y
Pediculus humanus
Human body louse
Y
Pediculus humanus
Human body louse
Y
Pediculus humanus
Human body louse
Y
Tribolium castaneum
Red flour beetle
Y
Tribolium castaneum
Red flour beetle
Y
Tribolium castaneum
Red flour beetle
Y
Tribolium castaneum
Red flour beetle
Y
Tribolium castaneum
Red flour beetle
Y
Orthologs in non-Insect Arthropods
(EOG6J6Q71 )
Daphnia pulex
Water flea
Y
Daphnia pulex
Water flea
Y
Daphnia pulex
Water flea
Y
Daphnia pulex
Water flea
Y
Daphnia pulex
Water flea
Y
Ixodes scapularis
Deer tick
Y
Ixodes scapularis
Deer tick
Y
Ixodes scapularis
Deer tick
Y
Ixodes scapularis
Deer tick
Y
Ixodes scapularis
Deer tick
Y
Orthologs in non-Arthropod Metazoa
(EOG657J2D )
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Caenorhabditis elegans
Nematode
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Strongylocentrotus purpuratus
Purple sea urchin
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Xenopus tropicalis
Western clawed frog
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Gallus gallus
Domestic chicken
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Mus musculus
House mouse
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Rattus norvegicus
Norway rat
Y
Human Orthologs (7)AAA Orthologs (11)
based on analysis using Dmel annotation version 4.3
Drosophila pseudoobscura pseudoobscura
Stocks & Reagents Stocks Listed in FlyBase ( 14 )Bloomington Harvard VDRC Genomic Clones ( 2 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 82 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- Results from RNAi screens.
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for database merge of Source for merge of: Rab8 l(3)76BDu
Additional comments Other Comments dsRNA has been made from templates generated with primers directed against this gene.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
Isolated from a Drosophila head cDNA library.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
domains - A database of protein families, domains, and functional sites
- Patterns of gene expression in Drosophila embryogenesis
Linkouts
- A comprehensive database of gene and protein interactions.
- Results from RNAi screens.
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 13 )Reported As Symbol Synonym CG8287
(
Verstreken and Bellen, 2000.9.4 ,
Zhang et al., 2007 ,
Sinka et al., 2008 ,
Perkins et al., 2009 ,
Li et al., 2010 ,
Ni et al., 2010.12.1 ,
Colicelli, 2004 )
Rab8
(
Giagtzoglou et al., 2012 ,
Callejo et al., 2011 ,
Liebl and Featherstone, 2008 ,
Hazelett et al., 2012 ,
Cooper et al., 2010 ,
Kouranti et al., 2006 ,
Cermelli et al., 2006 ,
Stuart et al., 2007 ,
Zhang et al., 2007 ,
Zhang et al., 2007 ,
Cook, 2008.12.1 ,
Sinka et al., 2008 ,
Haghnia et al., 2007 ,
Warner and Longmore, 2009 ,
Akimana et al., 2010 ,
Wu et al., 2005 ,
Japanese National Institute of Genetics, 2012.5.21 )
Name Synonym Secondary FlyBase
IDs References ( 64 )Generate a list of List References by type
Recent research papers ( 7 )
Lindsley et al., 2013, PLoS ONE 8(2): e55915Anent the Genomics of Spermatogenesis in Drosophila melanogaster. [FBrf0220812] Giagtzoglou et al., 2012, J. Cell Biol. 196(1): 65--83dEHBP1 Controls Exocytosis and Recycling of Delta During Asymmetric Divisions. [FBrf0217836] Hazelett et al., 2012, G3 (Bethesda) 2(7): 789--802Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila. [FBrf0219102] Jin et al., 2012, PLoS ONE 7(7): e40912Similarities of Drosophila rab GTPases Based on Expression Profiling: Completion and Analysis of the rab-Gal4 Kit. [FBrf0219021] Callejo et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(31): 12591--12598Feature Article: From the Cover: Dispatched mediates Hedgehog basolateral release to form the long-range morphogenetic gradient in the Drosophila wing disk epithelium. [FBrf0214615] Chan et al., 2011, Curr. Biol. 21(20): 1704--1715Systematic discovery of rab GTPases with synaptic functions in Drosophila. [FBrf0216517] Uytterhoeven et al., 2011, Cell 145(1): 117--132Loss of skywalker reveals synaptic endosomes as sorting stations for synaptic vesicle proteins. [FBrf0213384]
Recent reviews (0)
All reviews listed in FlyBase were published before 2011