Gene Dmel\CG43129

Help

Close All Open All

General Information

Symbol

Dmel\CG43129

Species

D. melanogaster

Name

Annotation symbol

CG43129

Feature type

protein_coding_gene

FlyBase ID

FBgn0262599

Gene Model Status

Current

Stock availability

6 publicly available

Also Known As

CG17085

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

32B1-32B1

Sequence location

2L:10,851,332..10,854,603 [+]

Genomic Maps

Select View:

modENCODE GBrowse

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG43129 (FBgn0262599). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: SET domain. Gene sequence location is 2L:10851332..10854603.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.

FB2012_01

Sequence features

BKN30739

HFA02565

HFA02566

BKN33108

FB2011_10

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

32B1-32B1

Limits computationally determined from genome sequence between P{PZ}dbf¹ and P{lacW}SCAR^k03107

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG43129 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene merge based on EST/cDNA data.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG43129-RC

FBtr0305257

1683

503

CG43129-RD

FBtr0305258

1701

507

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG43129-PC

FBpp0293781

56.3

503

5.29

CG43129-PD

FBpp0293782

56.9

507

6.65

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

SET domain (IPR001214)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

High-Throughput Expression Data

Untitled Document detailed view

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable

CG43129^e02595

viable, with Scer\GAL4^pnr-MD237

CG43129^GD9281

Sterility

Allele

fertile

CG43129^e02595

Phenotype manifest in

Allele

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of CG43129	Class	Mutagen	Stocks	Known lesion
CG43129^e02595		piggyBac transposase	2	--

Alleles Carried on Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG43129	Mutagen	Stocks	Known lesion
CG43129^GD9281	in vitro construct - RNAi in vitro construct - regulatory fusion	2	Yes
CG43129^KK110739	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG43129^KK113108	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG43129^GD9282	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes

Aneuploid Aberrations

Disrupted in

Df(2L)Exel8026

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}CG43129^e02595

insertion of mobile activating element

P{GSV1}C242^C242

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Protein-protein

Interacting group

Assay

References

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG43129 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0262599

Orthologs

Genome-wide drosophilid orthologs

Dana\GF15829

Dana\GF19729

Dere\GG23679

Dere\GG23681

Dgri\GH13589

Dgri\GH13590

Dmoj\GI23569

Dmoj\GI23580

Dper\GL19121

Dper\GL19122

Dpse\GA14318

Dpse\GA14319

Dsec\GM18750

Dsec\GM18755

Dsim\GD23737

Dvir\GJ20766

Dvir\GJ20777

Dwil\GK18437

Dwil\GK18438

Dyak\GE18492

Dyak\GE18493

Curated drosophilid orthologs

Dpse\GA14318

Dpse\GA14319

Linkouts

Stocks & Reagents

Stocks Listed in FlyBase ( 6 )

Bloomington

18066

w¹¹¹⁸; PBac{RB}CG43129^e02595

Harvard

PBac{RB}CG43129^e02595

VDRC

v105040

P{KK113108}VIE-260B

v105788

P{KK110739}VIE-260B

v20367

w¹¹¹⁸; P{GD9281}v20367

v20365

w¹¹¹⁸; P{GD9281}v20365/CyO

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 1 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

RE12806

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0262599

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG17085 CG17086

(FlyBase Genome Annotators, 2010)

Additional comments

Annotations CG17085 and CG17086 merged as CG43129 in release 5.32 of the genome annotation.

(FlyBase Genome Annotators, 2010)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

UniProtKB/TrEMBL

•

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

SET domain (IPR001214)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0262599

DRSC - Results from RNAi screens.

•

FBgn0262599

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

modMine - Data generated by the modENCODE project.

•

FBgn0262599

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

CG17085

(Molnar et al., 2006, Keleman et al., 2009.8.5)

CG17086

(Keleman et al., 2009.8.5)

CG43129

(FlyBase Genome Annotators, 2010)

Name Synonym

Secondary FlyBase IDs

FBgn0032309
FBgn0032310

References ( 13 )

Research paper

Molnar et al., 2006, Genetics 174(3): 1635--1659: A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. [FBrf0195387]

Supplementary material

Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Dietzl et al., 2007, Nature 448(7150):: Supplementary Table 1. [FBrf0202579]
Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase.: Exelixis insertion alleles that are not in FlyBase. [FBrf0179797]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]

FlyBase analysis

FlyBase Genome Annotators, 2010, Changes affecting gene model number or type in release 5.32 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.32 of the annotated D.melanogaster genome. [FBrf0211868]
FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.: Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]: [title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]