A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Imp

General Information
SymbolDmel\ImpSpeciesD. melanogaster
NameIGF-II mRNA-binding proteinAnnotation symbolCG1691
Feature typeprotein_coding_geneFlyBase IDFBgn0262735
Gene Model StatusCurrent Stock availability 27 publicly available
Also Known AsdIMP, MRE11, l(1)G0072, IMP-1
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map9F1-9F4Sequence locationX:10,682,721..10,716,815 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene IGF-II mRNA-binding protein is referred to in FlyBase by the symbol Dmel\Imp (CG1691, FBgn0262735). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding. There is experimental evidence that it is involved in the biological process: nervous system development; synaptic growth at neuromuscular junction; spermatogenesis. 62 alleles are reported. The phenotypes of these alleles are annotated with: chorion; NMJ bouton; egg; macrochaeta; dorsal appendage. It has 11 annotated transcripts and 11 annotated polypeptides. Protein features are: K Homology; K Homology, type 1; K Homology, type 1, subgroup; Nucleotide-binding, alpha-beta plait; RNA recognition motif domain. Gene sequence location is X:10682721..10716815.

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Description
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FB2011_10
References
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
9F1-9F4  
Limits computationally determined from genome sequence between P{EP}sesBEP319&P{EP}ImpEP760 and P{EP}EP1321EP1321&P{EP}CG2061EP1537  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
9F1-9F4  
(determined by in situ hybridisation)  
9C3-9C4  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\Imp for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0073426 FBtr0073422 FBtr0073421 FBtr0305149 FBtr0073418 FBtr0073420 FBtr0073419 FBtr0305150 FBtr0073417 FBtr0073416 FBtr0073415 FBtr0073414 FBtr0301409 FBtr0073413 FBpp0293679 FBpp0073274 FBpp0073276 FBpp0073275 FBpp0073271 FBpp0073270 FBpp0073272 FBpp0073273 FBpp0073269 FBpp0293680 FBpp0290623 FBti0012816 FBti0036756 FBti0007287 FBti0111091 FBti0068734 FBti0023195 FBti0034811 FBti0059410 FBti0048915 FBti0143596 FBti0007325 FBti0052732 FBti0143588 FBti0048909 FBti0024761 FBti0143574 FBti0059462 FBti0058931 FBti0028624 FBti0011873 FBti0016573 FBti0028934 FBti0029070 FBti0036772 FBti0036276 FBti0068636 FBti0059276 FBti0055635 FBti0058876 FBti0069907 FBti0069379 FBti0071765 FBti0071830 FBti0099811 FBti0108748 FBti0033925 FBti0059488 FBti0035061 FBti0035751 FBti0113523 FBti0033699 FBti0054793 FBti0071971 FBti0056665 FBti0070519 FBti0018113 FBti0069906 FBti0053707 FBti0054047
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0073420
  3296
  566
FBtr0073419
  2859
  566
FBtr0073418
  6758
  566
FBtr0073416
  8741
  573
FBtr0073417
  3700
  573
FBtr0073413
  4477
  573
FBtr0073415
  5578
  573
FBtr0073414
  7373
  573
FBtr0301409
  3938
  580
FBtr0305149
 
  3401
  631
FBtr0305150
 
  11030
  638
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Imp-PA  
FBpp0073276  
62.1  
566  
10.16  
Imp-PB  
FBpp0073275  
62.1  
566  
10.16  
Imp-PC  
FBpp0073274  
62.1  
566  
10.16  
Imp-PD  
FBpp0073272  
62.7  
573  
9.32  
Imp-PE  
FBpp0073273  
62.7  
573  
9.32  
Imp-PF  
FBpp0073269  
62.7  
573  
9.32  
Imp-PG  
FBpp0073271  
62.7  
573  
9.32  
Imp-PH  
FBpp0073270  
62.7  
573  
9.32  
Imp-PJ  
FBpp0290623  
63.4  
580  
8.77  
Imp-PK  
FBpp0293679  
69.4  
631  
9.72  
 
 
Imp-PL  
FBpp0293680  
69.9  
638  
8.29  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:4 diffuse circumferential stripes that broaded with time
Additional Descriptive Data
Imp expression at embryonic stages 1-4 is localized to the posterior pole of the embryo.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Imp-RK Imp-RC Imp-RA Imp-RB Imp-RL Imp-RE Imp-RD Imp-RG Imp-RH Imp-RJ Imp-RF
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
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modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
hide Alleles & Phenotypes
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Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
anterior fascicle & synapse, with Scer\GAL4elav-C155
hide Classical Alleles ( 55 )
For All Classical Alleles Show

Allele of ImpClassMutagenStocksKnown lesion
ImpBG02083
1 --
ImpCB-5523-3
1 --
ImpCB-6236-3
1 --
ImpCB-6504-3
1 --
ImpCB-6657-3
1 --
Impd004351 --
Impd018371 --
Impd022391 --
Impd047571 --
Impd085781 --
Impe045421 --
Impe045561 --
ImpEP7601 --
Impf060661 --
Impf078101 --
ImpG00721 --
ImpKG08397
1 --
ImpNP0519
1 --
ImpNP0783
1 --
ImpNP2784
1 --
ImpNP5012
1 --
ImpNP6059
1 --
ImpZCL0310
1 --
ImpZCL2884X
1 --
Imp20 Yes
Imp5-HA-2179
0 --
Imp5-HA-2280
0 --
Imp5-HA-2419
0 --
Imp70 Yes
Imp80 Yes
ImpBG018220 Yes
ImpCB-6780-3
0 --
ImpCB045730 Yes
ImpCPTI0039100 Yes
ImpCPTI0040440 Yes
ImpCPTI0041170 Yes
Impd058430 --
Impd081800 --
Impd081870 --
Impd10873
0 --
ImpEP13300 --
ImpEP14330 Yes
ImpG000800 --
ImpG001520 Yes
ImpG0171X
0 --
ImpG0293X
0 Yes
ImpGG01224
0 --
ImpGG01290
0 --
ImpH1490 Yes
ImpH440 Yes
ImpHC133
0 --
ImpNP4135
0 --
ImpPTT
0 Yes
ImpYB00570 --
ImpYD01660 Yes
hide Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show

Allele of ImpClassMutagenStocksKnown lesion
ImpGD92322 Yes
ImpHMS011681 Yes
ImpKH.Scer\UAS0 Yes
ImpRE.Scer\UAS0 Yes
ImpScer\UAS.cGa0 Yes
ImpSD.Scer\UAS0 Yes
ImpαTub67C.T:Avic\GFP0 Yes
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Not disrupted in
Disrupted in
Duplicated in
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Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from expression pattern
Cellular Component
CV term
References
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with EMBL:AF061569
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
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hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
Imp allele
Gene
References
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Linkouts
DroID - A comprehensive database of gene and protein interactions.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
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hide Stocks Listed in FlyBase ( 27 )
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: IGF-II CG1691
Source for database merge of
Source for merge of: Imp anon-EST:fe2B3
Source for merge of: Imp l(1)G0072
Source for merge of: Imp MRE11
Additional comments
MRE11 is part of the 3' UTR of Imp.
MRE11 corresponds to a portion of the 3' UTR of Imp.
Source for merge of: Imp anon-WO0140519.39 Source for merge of Imp anon-WO0140519.39 was sequence comparison (date:051113).
Source for identity of IGF-II CG1691 was sequence comparison (date:000414).
hide Other Comments
Imp plays no essential role in the assembly or function of the pole plasm.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Synonyms & Secondary IDs ( 18 )
Reported As
Symbol Synonym
anon-EST:fe2B3
 
anon-WO0140519.39
 
cg1691
IGF-II
 
Name Synonym
anon-fast-evolving-2B3
 
insulin-like growth factor II
mRNA-like ncRNA in embryogenesis 11
 
Secondary FlyBase IDs
  • FBgn0025229
  • FBgn0026687
  • FBgn0030235
  • FBgn0044592
  • FBgn0086543
hide References ( 71 )
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hide Recent research papers ( 7 )
Shimada et al., 2011, Dev. Biol. 355(2): 250--262
Reversible response of protein localization and microtubule organization to nutrient stress during Drosophila early oogenesis. [FBrf0213933]
Vazquez-Pianzola et al., 2011, Dev. Biol. 357(2): 404--418
Pabp binds to the osk 3'UTR and specifically contributes to osk mRNA stability and oocyte accumulation. [FBrf0214798]
Blanco et al., 2010, BMC Dev. Biol. 10: 94
Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Gan et al., 2010, Cell Res. 20(7): 763--783
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. [FBrf0211191]
Nystul and Spradling, 2010, Genetics 184(2): 503--515
Regulation of epithelial stem cell replacement and follicle formation in the Drosophila ovary. [FBrf0209788]
Saja et al., 2010, Neurobiol. Disease 40(1): 135--145
Identifying cellular pathways modulated by Drosophila palmitoyl-protein thioesterase 1 function. [FBrf0211567]
Wasbrough et al., 2010, J. Proteomics 73(11): 2171--2185
The Drosophila melanogaster sperm proteome-II (DmSP-II). [FBrf0211978]