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Gene Dmel\mub

General Information
Symbol	Dmel\mub	Species	D. melanogaster
Name	mushroom-body expressed	Annotation symbol	CG7437
Feature type	protein_coding_gene	FlyBase ID	FBgn0262737
Gene Model Status	Current	Stock availability	22 publicly available
Also Known As	MRE17, l(3)04093
Genomic Location
Chromosome (arm)	3L	Recombination map	3-
Cytogenetic map	78F4-79A3	Sequence location	3L:21,837,888..21,925,802 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene mushroom-body expressed is referred to in FlyBase by the symbol Dmel\mub (CG7437, FBgn0262737). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: poly(C) RNA binding. There is experimental evidence that it is involved in the biological process: regulation of alternative mRNA splicing, via spliceosome. 41 alleles are reported. The phenotypes of these alleles are annotated with: chorion; egg; dorsal appendage. It has 11 annotated transcripts and 11 annotated polypeptides. Protein features are: K Homology domain; K Homology domain, type 1. Gene sequence location is 3L:21837888..21925802.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Alleles mub[MI08161]
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 78F4-79A3   Limits computationally determined from genome sequence between P{lacW}l(3)j1B10j1B10 and P{lacW}l(3)j2C4j2C4
Experimentally Determined Cytological Location
Cytogenetic map Notes References 79B1-79B2   (determined by in situ hybridisation)   (Lukacsovich et al., 2001) 79B1-79B3     (Grams, 1996.7.15) 79B1-79B2   (determined by in situ hybridisation)   (Spradling et al., 1999) 79B-79B   (determined by in situ hybridisation)   (Grams and Korge, 1998) 66A1-66A2     (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location	3- (Grams, 1996.7.15)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\mub for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45 Gene model reviewed during 5.46 Stage-specific extension of 3' UTRs observed during embryogenesis (FBrf0215804); all variants may not be annotated. Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) mub-RA FBtr0078468  NM_079484   3437   386 mub-RC FBtr0078470  NM_206423   9374   364 mub-RD FBtr0111017  NM_001043154   3387   539 mub-RE FBtr0301364  NM_001170022   3441   557 mub-RF FBtr0304980  NM_001259944   3553   557 mub-RG FBtr0304981  NM_168946   3468   359 mub-RH FBtr0304982  NM_001259947   3690   433 mub-RI FBtr0304983  NM_001259945   3387   539 mub-RK FBtr0304984  NM_001259946   3489   573 mub-RL FBtr0332736  NM_001275269   2968   368 mub-RM FBtr0333222  NM_001275268   9471   359
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein mub-PA   FBpp0078122   40.6   386   8.32     NP_524208   AAF51792 mub-PC   FBpp0089422   38.5   364   8.56     NP_996145   AAS65095 mub-PD   FBpp0110316   54.5   539   8.89     NP_001036619   ABI31266 mub-PE   FBpp0290578   56.2   557   8.72     NP_001163493   ACZ94764 mub-PF   FBpp0293517   56.2   557   8.72     NP_001246873   AFH04544 mub-PG   FBpp0293518   37.9   359   8.67     NP_730700   AAN12194 mub-PH   FBpp0293519   45.4   433   8.11     NP_001246876   AFH04547 mub-PI   FBpp0293520   54.3   539   9.03     NP_001246874   AFH04545 mub-PK   FBpp0293521   58.1   573   8.48     NP_001246875   AFH04546 mub-PL   FBpp0304982   38.8   368   8.56     NP_001262198   AGB94891 mub-PM   FBpp0305424   37.9   359   8.67     NP_001262197   AGB94890
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • K Homology domain (IPR004087) K Homology domain, type 1 (IPR004088)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202544   AA540851   AA567459   AA697972   AA802077   AA951799   AE014296 AAF51792   AE014296 AAN12194   AE014296 AAS65095   AE014296 ABI31266   AE014296 ACZ94764   AE014296 AFH04544   AE014296 AFH04545   AE014296 AFH04546   AE014296 AFH04547   AE014296 AGB94890   AE014296 AGB94891   AI257117   AI257118   AI294753   AI544150   AQ025286   AQ034062   AQ073067   AQ254634   AW943137   AX260071   AX260073   AX260074   AX260075   AY060403 AAL25442   BI216536   BI235972   BI363946   BI365502   BI375350   BI565954   BI569444   BI569469   BI569832   BI570066   BI574370   BI583775   BI585284   BI587109   BI587508   BI606992   BI622515   BI626681   BI627077   BI639256   BT006016   BT030140   BT030417   BT133144   CO177535   CO178898   CO179207   CO179645   CO181223   CO187239   CO189093   CO263572   CO263887   CO264180   CO267559   CO267803   CO268426   CO269057   CO269317   CO270725   CO270983   CO272571   CO273903   CO274409   CO274784   CO275113   CO277781   CO282332   CO284189   CO284964   CO287986   CO288883   CO291438   CO293035   CO293987   CO294306   CO294428   CO296031   CO297723   CO303231   CO303766   CO305535   CO305630   CO310395   CO311823   CO314264   CO319691   CO328627   CO329605   CO334054   CO342214   CO342651   CO344822   CZ466979   CZ466980   CZ472236   CZ472762   CZ473213   CZ476750   CZ478244   CZ479779   CZ479895   CZ481319   CZ486110   CZ486111   CZ486425   CZ486426   CZ487986   CZ487987   EC061025   EC061686   EC065962   EC069621   EC069816   EC070065   EC073535   EC075390   EC076073   EC076364   EC080432   EC082063   EC086891   EC090006   EC194491   EC194540   EC196511   EC197395   EC198415   EC200210   EC200757   EC202412   EC203200   EC203810   EC207650   EC207952   EC208591   EC209235   EC209469   EC213020   EC213689   EC214420   EC218945   EC220234   EC221497   EC223103   EC223245   EC226500   EC227805   EC228721   EC231594   EC233295   EC233721   EC233950   EC234122   EC234556   EC236921   EC242435   EC243060   EC247075   EC247284   EC249265   EC250393   EC250394   EC251970   EC252274   EC252280   EC253533   EC255654   EC257486   EC260517   EL885891   EL885892   EV577494   EV582807   EV591284   EV593935   EV599693   GH941516   GH942795   GH944867   GH946336   GH947512   GH948272   GH949773   GH951941   GH952389   GH957171   GH960343   GH961643   GH963733   GH965102   GH965494   GH967225   GH967596   GH971686   GH972256   GH972345   GH974195   GH975481   GH979681   GH980203   GH980629   GH980992   GH981102   GH981560   GH982771   X99340 CAA67719
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	P91632 Q95SZ9 Q0E8A7 A4IJ59
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic central brain   (Fisher et al., 2012) mushroom body primordium   (Fisher et al., 2012) Comment:reported as embryonic central brain mushroom body ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3    117 central nervous system, pupae P8    276 head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male    133 head, mated 4-day male    113 head, mated 20-day male    109 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae    123 fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3  (117) central nervous system, pupae P8  (276) head, virgin 1-day female  (93) head, virgin 4-day female  (85) head, virgin 20-day female  (35) head, mated 1-day female  (90) head, mated 4-day female  (60) head, mated 20-day female  (36) head, mated 1-day male  (133) head, mated 4-day male  (113) head, mated 20-day male  (109) salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  (33) digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae  (123) fat body, pupae P8  (78) carcass, larvae L3 wandering  (39) carcass, 1-day adult  (30) carcass, 4-day adult  (30) carcass, 20-day adult    20 ovary, virgin 4-day female  (57) ovary, mated 4-day female  (62) testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3  (117) central nervous system, pupae P8  (276) head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male  (133) head, mated 4-day male  (113) head, mated 20-day male  (109) salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae  (123) fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3    117 central nervous system, pupae P8    276 head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male    133 head, mated 4-day male    113 head, mated 20-day male    109 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae    123 fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3    117 central nervous system, pupae P8    276 head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male    133 head, mated 4-day male    113 head, mated 20-day male    109 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae    123 fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3  (117) central nervous system, pupae P8  (276) head, virgin 1-day female  (93) head, virgin 4-day female  (85) head, virgin 20-day female  (35) head, mated 1-day female  (90) head, mated 4-day female  (60) head, mated 20-day female  (36) head, mated 1-day male  (133) head, mated 4-day male  (113) head, mated 20-day male  (109) salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  (33) digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae  (123) fat body, pupae P8  (78) carcass, larvae L3 wandering  (39) carcass, 1-day adult  30 carcass, 4-day adult  30 carcass, 20-day adult    20 ovary, virgin 4-day female  (57) ovary, mated 4-day female  (62) testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3  117 central nervous system, pupae P8  (276) head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male  133 head, mated 4-day male  113 head, mated 20-day male  109 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae  123 fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    25 central nervous system, larvae L3    117 central nervous system, pupae P8    276 head, virgin 1-day female    93 head, virgin 4-day female    85 head, virgin 20-day female    35 head, mated 1-day female    90 head, mated 4-day female    60 head, mated 20-day female    36 head, mated 1-day male    133 head, mated 4-day male    113 head, mated 20-day male    109 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    33 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    6 digestive system, 4-day adult    8 digestive system, 20-day adult    4 fat body, larvae L3 wandering    12 fat body, white prepupae    123 fat body, pupae P8    78 carcass, larvae L3 wandering    39 carcass, 1-day adult    30 carcass, 4-day adult    30 carcass, 20-day adult    20 ovary, virgin 4-day female    57 ovary, mated 4-day female    62 testis, mated 4-day male    3 accessory gland, mated 4-day male    10 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9  (28) white prepupae new  (32) white prepupae 12hr  (35) white prepupae 24hr  (58) pupae 2d postWPP  (66) pupae 3d postWPP  (31) pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9  28 white prepupae new  32 white prepupae 12hr  (35) white prepupae 24hr  (58) pupae 2d postWPP  (66) pupae 3d postWPP  31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    8 embryo 04-06hr    5 embryo 06-08hr    5 embryo 08-10hr    6 embryo 10-12hr    7 embryo 12-14hr    8 embryo 14-16hr    4 embryo 16-18hr    5 embryo 18-20hr    5 embryo 20-22hr    5 embryo 22-24hr    7 larva L1    5 larva L2    3 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    28 white prepupae new    32 white prepupae 12hr    35 white prepupae 24hr    58 pupae 2d postWPP    66 pupae 3d postWPP    31 pupae 4d postWPP    11 adult male 01day    17 adult male 05day    12 adult male 30day    11 adult female 01day    12 adult female 05day    17 adult female 30day    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    8 embryonic 1182-4H    0 embryonic GM2    11 embryonic Kc167    13 embryonic S1    8 embryonic S3    13 leg disc CME L1    6 wing disc CME-W2    11 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    10 wing disc ML-DmD32    8 haltere disc ML-DmD17-c3    17 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    16 CNS ML-DmBG1-c1    11 CNS ML-DmBG2-c2    22 tumorous blood cells mbn2    4 ovary fGS/OSS    25 ovary OSC    20 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (34) cold shock, 4-day adult  (30) heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (57) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  (95) Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (55) Caffeine 25 mg/ml 48 hrs, 4-day adult  (40) Paraquat 5 mM 48 hrs, 4-day adult  (41) Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (34) cold shock, 4-day adult  30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult  (57) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  (95) Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (55) Caffeine 25 mg/ml 48 hrs, 4-day adult  (40) Paraquat 5 mM 48 hrs, 4-day adult  (41) Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    34 cold shock, 4-day adult    30 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    22 Cadmium 50 mM 48 hrs, 4-day adult    21 Cadmium 100 mM 48 hrs, 4-day adult    57 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    95 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    26 Ethanol 5% 3 hrs, larvae L3    6 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    55 Caffeine 25 mg/ml 48 hrs, 4-day adult    40 Paraquat 5 mM 48 hrs, 4-day adult    41 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_23
External Data & Images
Linkouts	BDGP expression data • HL01663 LD32520
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 mubGD12242 lethal | recessive mub04093 mubGTD7-11 mubj6B10 mubj8B3 partially lethal - majority die | recessive mubGTDZ-1 viable mubCC01995 Other Phenotypes Allele eclosion defective (with Df(3L)Exel6137) mub04093 flightless (with Df(3L)Exel6137) mub04093 gravitaxis defective mubBG00043 gravitaxis defective | male limited mubBG00041 locomotor behavior defective (with Df(3L)Exel6137) mub04093 long lived mubBG00043 mubBG00106 long lived | female limited mubBG00039 long lived | male limited mubBG00041 mubBG00042 mubrev1 mubrev3 starvation stress response defective mubBG00042 mubBG00043 starvation stress response defective | male limited mubBG00041 temperature response defective mubBG00041 mubBG00042 Phenotype manifest in Allele chorion, with Scer\GAL4mat.αTub67C.T:Hsim\VP16 mubScer\UAS.cGa dorsal appendage, with Scer\GAL4mat.αTub67C.T:Hsim\VP16 mubScer\UAS.cGa egg, with Scer\GAL4mat.αTub67C.T:Hsim\VP16 mubScer\UAS.cGa
Classical Alleles ( 36 )
For All Classical Alleles Show
Allele of mub Class Mutagen Stocks Known lesion mub04093 P-element activity 1 -- mubBG00074 P-element activity 1 -- mubc06691 1 -- mubCB-5230-3 1 -- mubd03166 P-element activity 1 -- mubd09454 P-element activity 1 -- mube00354 piggyBac transposase 1 -- mube01971 piggyBac transposase 1 -- mube03562 piggyBac transposase 1 -- mubf03532 piggyBac transposase 1 -- mubf03831 piggyBac transposase 1 -- mubf05421 piggyBac transposase 1 -- mubMI02309 1 -- mubMI03237 1 -- mubMI04705 1 -- mubMI08161 1 -- mubBG00039 P-element activity 0 -- mubBG00041 P-element activity 0 -- mubBG00042 P-element activity 0 -- mubBG00043 P-element activity 0 -- mubBG00106 0 -- mubc01204 piggyBac transposase 0 -- mubCC01995 P-element activity 0 Yes mubd01447 P-element activity 0 -- mubd02339 P-element activity 0 -- mubDG14808 P-element activity 0 -- mube02071 piggyBac transposase 0 -- mubEP3108 P-element activity 0 Yes mubEP3623 P-element activity 0 Yes mubEP783 P-element activity 0 -- mubGTD7-11 P-element activity 0 Yes mubGTDZ-1 P-element activity 0 Yes mubj6B10 P-element activity 0 -- mubj8B3 P-element activity 0 -- mubrev1 Delta2-3 0 Yes mubrev3 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of mub Class Mutagen Stocks Known lesion mub816.i in vitro construct 2 Yes mubGD12242 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes mubHMS00189 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes mubKK108209 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes muba.hs in vitro construct - regulatory fusion 0 Yes mubScer\UAS.cGa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Not disrupted in	Df(3L)Pc (BDGP Project Members, 1994-1999) Df(3L)Pc-MK (Spradling et al., 1999, BDGP Project Members, 1994-1999)
Disrupted in	Df(3L)BSC284 (Christensen et al., 2007.5.8) Df(3L)Exel6137 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12242} NA P{KK108209} NA P{TRiP.HMS00189} NA P{UASp-mub} NA heat-shock construct P{hs-mub.a} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}EP3638 NA P{EP}mubEP783 NA P{EP}mubEP3108 NA P{EP}mubEP3623 NA P{XP}mubd01447 NA P{XP}mubd02339 NA P{XP}mubd03166 NA P{XP}mubd09454 NA insertion of enhancer trap P{lacW}l(3)SH106SH106 No P{lacW}mubj6B10 No P{lacW}mubj8B3 No P{PZ}l(3)0083600836 No P{PZ}mub04093 No miscellaneous insertions Mi{MIC}mubMI02309 NA Mi{MIC}mubMI03237 NA Mi{MIC}mubMI04705 NA Mi{MIC}mubMI08161 NA P{attP.w+.attP}FS10 NA P{GT1}mubBG00039 NA P{GT1}mubBG00041 NA P{GT1}mubBG00042 NA P{GT1}mubBG00043 NA P{GT1}mubBG00074 NA P{GT1}mubBG00106 NA P{GTD-b}mubGTD7-11 NA P{GTD-b}mubGTDZ-1 NA P{PTT-GC}mubCC01995 NA P{RS3}mubCB-5230-3 NA P{UASp-YFP.Rab7.T22N}06 NA P{UASp-YFP.RabX6}03 NA P{wHy}mubDG14808 NA PBac{PB}mubc01204 NA PBac{PB}mubc06691 NA PBac{RB}mube00354 NA PBac{RB}mube01971 NA PBac{RB}mube02071 NA PBac{RB}mube03562 NA PBac{WH}mubf03532 NA PBac{WH}mubf03831 NA PBac{WH}mubf05421 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
regulation of alternative mRNA splicing, via spliceosome inferred from mutant phenotype (Park et al., 2004)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
poly(C) RNA binding inferred from sequence or structural similarity with NCBI_gi:4826886 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nucleus inferred by curator from GO:0000381 (Park et al., 2004)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
mub - Arf79F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG10158 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG10306 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG10993 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG13321 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG1416 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG15735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG17494 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) mub - CG3817 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG4169 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG6724 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG7911 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG8036 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - CG9769 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Cen anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Gie anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Gp210 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Imp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Int6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - LRP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - LanB1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Mcr anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Pgam5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Rab2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - RluA-2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Syb anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Syp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Tango7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Tapδ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - Ubqn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - abs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - ana2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - cmet anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - ctp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - eIF-5A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - geminin experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) mub - kst anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - l(1)G0320 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - mRpL52 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - mRpS24 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - mRpS28 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - mTerf3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - nxf2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - ref(2)P anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - row anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - tlk anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) mub - woc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions mub allele Gene References unspecified ps (Park et al., 2004)
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0262737
Orthologs
OrthoDB Orthologs (66) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG680JGQ Dipteran inclusive ortholog search EOG63FH5K Insect inclusive ortholog search EOG6CJTCT Arthropod inclusive ortholog search EOG64F4RS Metazoa inclusive ortholog search EOG6S261S
Orthologs in Drosophila Species (EOG680JGQ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\mub     Drosophila simulans   Dsim\GD15007 Y   Drosophila simulans   Dsim\GD17651     Drosophila sechellia   Dsec\GM22416 Y   Drosophila erecta   Dere\GG16232 Y   Drosophila yakuba   Dyak\GE22592 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20351 Y   Drosophila persimilis   Dper\GL24805 Y   Drosophila willistoni   Dwil\GK10610 Y   Drosophila mojavensis   Dmoj\GI13561 Y   Drosophila grimshawi   Dgri\GH14429 Y
Orthologs in non-Drosophila Dipterans (EOG63FH5K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001245   Anopheles gambiae Malaria mosquito  Agam\AGAP004942   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015570   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015569
Orthologs in non-Dipteran Insects (EOG6CJTCT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB55088   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008821   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13119   Atta cephalotes Leafcutter ant  Acep\ACEP12293   Atta cephalotes Leafcutter ant  Acep\ACEP12291   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18595   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20627   Linepithema humile Argentine ant  Lhum\LH13503   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13775   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13774   Solenopsis invicta Red fire ant  Sinv\SINV17135   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004423   Bombyx mori Silkmoth  Bmor\BGIBMGA012503   Pediculus humanus Human body louse  Phum\PHUM522830   Pediculus humanus Human body louse  Phum\PHUM522820   Tribolium castaneum Red flour beetle  Tcas\TC000237
Orthologs in non-Insect Arthropods (EOG64F4RS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\HA   Ixodes scapularis Deer tick  Isca\ISCW016289
Orthologs in non-Arthropod Metazoa (EOG6S261S)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\Y119D3B.17   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005686gn   Danio rerio Zebrafish  Drer\ENSDARG00000086832   Danio rerio Zebrafish  Drer\ENSDARG00000086030   Danio rerio Zebrafish  Drer\zgc:110045   Danio rerio Zebrafish  Drer\pcbp3   Danio rerio Zebrafish  Drer\zgc:65870   Danio rerio Zebrafish  Drer\pcbp2   Xenopus tropicalis Western clawed frog  Xtro\pcbp1   Xenopus tropicalis Western clawed frog  Xtro\pcbp2   Xenopus tropicalis Western clawed frog  Xtro\pcbp3   Gallus gallus Domestic chicken  Ggal\PCBP3   Gallus gallus Domestic chicken  Ggal\ENSGALG00000013313   Gallus gallus Domestic chicken  Ggal\PCBP3   Mus musculus House mouse  Mmus\Pcbp3   Mus musculus House mouse  Mmus\ENSMUSG00000023495   Mus musculus House mouse  Mmus\Pcbp1   Mus musculus House mouse  Mmus\Pcbp2   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000039295   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000038946   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000036852   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000036988   Rattus norvegicus Norway rat  Rnor\LOC367191   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000012044   Rattus norvegicus Norway rat  Rnor\Pcbp3   Rattus norvegicus Norway rat  Rnor\Pcbp4   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000019487   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000006713   Rattus norvegicus Norway rat  Rnor\Pcbp1   Homo sapiens Human  Hsap\PCBP2   Homo sapiens Human  Hsap\PCBP4   Homo sapiens Human  Hsap\PCBP3   Homo sapiens Human  Hsap\PCBP1
Human Orthologs (4)
Gene OMIM HGNC Hsap\PCBP2     Hsap\PCBP4     Hsap\PCBP3     Hsap\PCBP1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD15007 Drosophila sechellia Dsec\GM22416 Drosophila erecta Dere\GG16232 Drosophila yakuba Dyak\GE22592 Drosophila ananassae Dana\GF10933 Drosophila pseudoobscura pseudoobscura Dpse\GA20351 Drosophila persimilis Dper\GL24805 Drosophila willistoni Dwil\GK10610 Drosophila virilis Dvir\GJ11921 Drosophila mojavensis Dmoj\GI13561 Drosophila grimshawi Dgri\GH14429
Stocks & Reagents
Stocks Listed in FlyBase ( 22 )
Bloomington	6775 P{UAS-f::nec-dsRNA}1, w1118
Harvard	- P{XP}mubd03166 - P{XP}mubd09454 - PBac{PB}mubc06691 - PBac{RB}mube00354 - PBac{RB}mube01971 - PBac{RB}mube03562 - PBac{WH}mubf03532 - PBac{WH}mubf03831 - PBac{WH}mubf05421
VDRC	v105495 P{KK108209}VIE-260B v28024 w1118; P{GD12242}v28024
	More stocks available...
Genomic Clones ( 1 )
	BACR15K24 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 178 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	HL01663 LD32520
Other clones	DPiM_LD32520 IP17311 IP17411 MIP33994
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM03819 HL01293 HL03549 LD01968 LD20678 LD46393 LP05390 LP05391 LP08203 RE23707 RE31944 RE48940 RE50840 RE63132 RH01511 RH01539 RH01990 RH02313 RH22461 RH23348 RH24873 RH27377 RH28202 RH34796 RH54403 RH67687 RH68274 RH73965 SD21796
Other clones	8551 12988 15905 17474 20177 29030 38021 38884 42876 44779 46495 56265 57130 57491 59078 65025 72595 75535 76423 76607 79925 99256 102952 103544 103822 103846 120574 122615 146055 146210 149716 156447 175740 177451 191029 214257.50 214377.23 214441.45 214443.47 214471.45 214505.37 214545.46 CK01.6C.H11 CK01.18C.E10 CK01.31D.C8 CK01.66A.D6 CK01.73C.D3 CK01.74D.E2 CK01.83D.H11 CK01.85A.F8 CK01.88B.C11 CK01.100B.F10 CK01.103C.H1 CK01.117B.H11 CK01.119D.D1 CK01.122C.C10 CK01.122C.E7 CK01.132D.E6 CK01.133A.G10 Dmel_dig_009631_0580_2730 Dmel_dig_014180_0580_2155 Dmel_neb_001046_0871_3760 Dmel_neb_007015_0641_0324 Dmel_neb_011099_0424_1412 EC13821 EK027444 EK043008 EK053747 EK057914 EK058749 EK060106 EK067456 EK069610 EK079329 EK088941 EK091313 EK093443 EK094120 EK100044 EK101251 EK107649 EK112602 EK114031 EK115506 EK116503 EK126352 EK136763 EK137903 EK150826 EK151859 EK160237 EK165446 EK167738 EK170418 EK201543 EK205317 EK206531 EK206921 EK212540 EK221529 EK226758 EK235551 EK240631 EK242721 EK248913 EK249131 EK280032 EK291032 EK293227 EK308749 EP14154 EP15259 EP19945 IP17211 RP004064653 RP004145450 RP004151345 RP004179544 RP004198439 RP004208824 RP004217355 RP004221072 RP004230609 RP004233727 RP004237128 RP004237755 RP004239552 RP004242838 RP004247738 RP004254717 RP004267601 RP004341711 RP004368512 RP004398917 RP004400521 RP004409221 RP004464684 RP004470392 RP004490525 RP004496239 RP004512180 RP004532455 RP004546395
RNAi & Array Information
Linkouts	GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40436
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: mub anon-WO0172774.33 anon-WO0172774.35 anon-WO0172774.36 anon-WO0172774.37 (FlyBase, 1996-) Source for merge of: mub l(3)04093 (Spradling et al., 1999) Source for merge of: mub MRE17 (FlyBase Genome Annotators, 2011)
Additional comments	MRE17 is part of the 3' UTR of mub. (FlyBase Genome Annotators, 2011) MRE17 corresponds to a portion of the 3' UTR of mub. (FlyBase Genome Annotators, 2011) Source for merge of mub anon-WO0172774.33 anon-WO0172774.35 anon-WO0172774.36 anon-WO0172774.37 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	mub has been cloned and sequenced, and its expression pattern has been analysed. (Grams and Korge, 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079484 NM_168946 NM_206423 NM_001043154 NM_001170022 NM_001259944 NM_001259945 NM_001259946 NM_001259947 NM_001275268 NM_001275269 RefSeq (Proteins) • NP_524208 NP_730700 NP_996145 NP_001036619 NP_001163493 NP_001246873 NP_001246874 NP_001246875 NP_001246876 NP_001262197 NP_001262198 DDBJ / EMBL / GenBank • AA540851 AA951799 AAF51792 AAL25442 AAN12194 AAS65095 ABI31266 ACZ94764 AFH04544 AFH04545 AFH04546 AFH04547 AGB94890 AGB94891 AQ025286 AQ034062 AQ073067 AQ254634 AW943137 AX260071 AX260073 AX260074 AX260075 AY060403 CAA67719 CZ466979 CZ466980 CZ472236 CZ472762 CZ473213 CZ476750 CZ478244 CZ479779 CZ479895 CZ481319 CZ486110 CZ486111 CZ486425 CZ486426 CZ487986 CZ487987 X99340 Entrez Gene - A searchable database of RefSeq genes. • 40436 UniProtKB/TrEMBL • A4IJ59 P91632 Q0E8A7 Q95SZ9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • K Homology domain (IPR004087) K Homology domain, type 1 (IPR004088) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • HL01663 LD32520
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0262737 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40436
Synonyms & Secondary IDs ( 16 )
Reported As
Symbol Synonym	anon-WO0172774.33   anon-WO0172774.35   anon-WO0172774.36   anon-WO0172774.37   CG7437 (Levis, 2001.2.27, Quinones-Coello, 2007, Keleman et al., 2009.8.5, McIntyre et al., 2006, Ni et al., 2011.7.19) l(3)04093 (Meister and Braun, 1995.10, BDGP Project Members, 1994-1999, ) l(3)j6B10   l(3)j8B3   MRE17 (FlyBase Genome Annotators, 2011, Kageyama, 2007.2.28, Inagaki et al., 2005) mub (Sofola et al., 2007, Hilgers et al., 2011, FlyBase Genome Annotators, 2011, Cao et al., 2008, Jang et al., 2006, Buszczak et al., 2007, Quinones-Coello, 2007, Zhang et al., 2007, Geng and MacDonald, 2007, Latouche et al., 2007, Telonis-Scott et al., 2009, Hong et al., 2008, Blard et al., 2007, Branco et al., 2008, McIntyre et al., 2006, Skora and Spradling, 2010, Magwire et al., 2010, Smibert et al., 2012) MUB (Sofola et al., 2007) Mub (Branco et al., 2004, Christensen et al., 2007.5.8, Dierick and Greenspan, 2006, Betz and Darnell, 2006, Sun et al., 2012)
Name Synonym	mRNA-like ncRNA in embryogenesis 17   mushroom bodies (Grams and Korge, 1995) mushroom body expressed (Magwire et al., 2010, Geng and MacDonald, 2007) mushroom-body expressed (Grams and Korge, 1998, Blard et al., 2007, )
Secondary FlyBase IDs
	FBgn0010834 FBgn0011394 FBgn0011408 FBgn0014362 FBgn0046394 FBgn0046395 FBgn0046396 FBgn0046397 FBgn0086548
References ( 74 )
Generate a list of	All references relating to this gene ( 74 )
List References by type	Research paper  ( 28 ) Supplementary material  ( 9 ) Review  ( 2 ) Personal communication to FlyBase  ( 21 ) Abstract  ( 5 ) FlyBase analysis  ( 4 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Patent  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Smibert et al., 2012, Cell Rep. 1(3): 277--289 Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila. [FBrf0218523] Sun et al., 2012, G3 (Bethesda) 2(5): 551--553 Simplified insertion of transgenes onto balancer chromosomes via Recombinase-Mediated Cassette Exchange. [FBrf0218264] Hilgers et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(38): 15864--15869 Neural-specific elongation of 3' UTRs during Drosophila development. [FBrf0215804] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...