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General Information
Symbol
Dmel\piRNA
Species
D. melanogaster
Name
piwi-associated RNA
Annotation Symbol
Feature Type
FlyBase ID
FBgn0263912
Gene Model Status
Stock Availability
Also Known As

Piwi-interacting RNA

Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (0 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    0
    Number of Unique Polypeptides
    0
    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model
    Sequence Ontology: Class of Gene
    Transcript Data
    Annotated Transcripts
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Polypeptides with Identical Sequences

     

    Additional Polypeptide Data and Comments
    Reported size (kDa)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
      Mapped Features

      Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\piRNA using the Feature Mapper tool.

      External Data
      Crossreferences
      Linkouts
      Expression Data
      Expression Summary Ribbons
      Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
      For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
      Transcript Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Polypeptide Expression
      Additional Descriptive Data
      Marker for
       
      Subcellular Localization
      CV Term
      Evidence
      References
      Expression Deduced from Reporters
      High-Throughput Expression Data
      Associated Tools

      GBrowse - Visual display of RNA-Seq signals

      View Dmel\piRNA in GBrowse 2
      RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
      Reference
      See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
      Developmental Proteome: Life Cycle
      Developmental Proteome: Embryogenesis
      External Data and Images
      Alleles, Insertions, and Transgenic Constructs
      Classical and Insertion Alleles ( 0 )
      For All Classical and Insertion Alleles Show
       
      Other relevant insertions
      Transgenic Constructs ( 0 )
      For All Alleles Carried on Transgenic Constructs Show
      Transgenic constructs containing/affecting coding region of piRNA
      Transgenic constructs containing regulatory region of piRNA
      Deletions and Duplications ( 0 )
      Phenotypes
      For more details about a specific phenotype click on the relevant allele symbol.
      Phenotype manifest in
      Allele
      Orthologs
      Human Orthologs (via DIOPT v8.0)
      Homo sapiens (Human) (0)
      No records found.
      Model Organism Orthologs (via DIOPT v8.0)
      Mus musculus (laboratory mouse) (0)
      No records found.
      Rattus norvegicus (Norway rat) (0)
      No records found.
      Xenopus tropicalis (Western clawed frog) (0)
      No records found.
      Danio rerio (Zebrafish) (0)
      No records found.
      Caenorhabditis elegans (Nematode, roundworm) (0)
      No records found.
      Arabidopsis thaliana (thale-cress) (0)
      No records found.
      Saccharomyces cerevisiae (Brewer's yeast) (0)
      No records found.
      Schizosaccharomyces pombe (Fission yeast) (0)
      No records found.
      Orthologs in Drosophila Species (via OrthoDB v9.1) ( None identified )
      No orthologies identified
      Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( None identified )
      No non-Drosophilid orthologies identified
      Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( None identified )
      No non-Dipteran orthologies identified
      Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( None identified )
      No non-Insect Arthropod orthologies identified
      Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )
      No non-Arthropod Metazoa orthologies identified
      Paralogs
      Paralogs (via DIOPT v8.0)
      Drosophila melanogaster (Fruit fly) (0)
      No records found.
      Human Disease Associations
      FlyBase Human Disease Model Reports
        Disease Model Summary Ribbon
        Disease Ontology (DO) Annotations
        Models Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Evidence
        References
        Potential Models Based on Orthology ( 0 )
        Human Ortholog
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
        Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
        Homo sapiens (Human)
        Gene name
        Score
        OMIM
        OMIM Phenotype
        DO term
        Complementation?
        Transgene?
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        esyN Network Diagram
        Interactions Browser
        Summary of Genetic Interactions
        esyN Network Diagram
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Linkouts
        Pathways
        Signaling Pathways (FlyBase)
        Metabolic Pathways
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        Recombination map
        Cytogenetic map
        Sequence location
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        Experimentally Determined Recombination Data
        Location
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (0)
        Genomic Clones (0)
         
          cDNA Clones (0)
           

          Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

          cDNA clones, fully sequenced
          BDGP DGC clones
            Other clones
              Drosophila Genomics Resource Center cDNA clones

              For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

                cDNA Clones, End Sequenced (ESTs)
                BDGP DGC clones
                  Other clones
                    RNAi and Array Information
                    Linkouts
                    Antibody Information
                    Laboratory Generated Antibodies
                     
                    Commercially Available Antibodies
                     
                    Other Information
                    Relationship to Other Genes
                    Source for database identify of
                    Source for database merge of
                    Additional comments
                    Other Comments
                    Origin and Etymology
                    Discoverer
                    Etymology
                    Identification
                    External Crossreferences and Linkouts ( 0 )
                    Synonyms and Secondary IDs (6)
                    Reported As
                    Symbol Synonym
                    piRNA
                    (Yamaguchi et al., 2020, Batki et al., 2019, Chang et al., 2019, Courret et al., 2019, Cusumano et al., 2019, Duc et al., 2019, ElMaghraby et al., 2019, Fabry et al., 2019, Ge et al., 2019, Hirakata and Siomi, 2019, Ishizu et al., 2019, Kneuss et al., 2019, Kofler, 2019, Kolliopoulou et al., 2019, Kotov et al., 2019, Maksimov and Koryakov, 2019, Marsano et al., 2019, Munafò et al., 2019, Nelson et al., 2019, Radion et al., 2019, Russo et al., 2019, Saha and Mishra, 2019, Specchia et al., 2019, Stein et al., 2019, Story et al., 2019, Trcek and Lehmann, 2019, Zhao et al., 2019, Akulenko et al., 2018, Barckmann et al., 2018, Cosacak et al., 2018, Czech et al., 2018, Moon et al., 2018, Oriel and Lasko, 2018, Parikh et al., 2018, Radion et al., 2018, Sato and Siomi, 2018, Sun et al., 2018, Teo et al., 2018, Théron et al., 2018, van den Beek et al., 2018, Wakisaka et al., 2018, Wang et al., 2018, Yamashiro and Siomi, 2018, Yashiro et al., 2018, Zhang et al., 2018, Zhang et al., 2018, Akkouche et al., 2017, Andersen et al., 2017, Asif-Laidin et al., 2017, Dehghani and Lasko, 2017, Dufourt et al., 2017, Fast et al., 2017, Han et al., 2017, Huang et al., 2017, Hyun, 2017, Karam et al., 2017, Luo and Lu, 2017, Marie et al., 2017, Ocorr et al., 2017, Pandey et al., 2017, Parhad et al., 2017, Pritykin et al., 2017, Rojas-Ríos et al., 2017, Ryazansky et al., 2017, Ryazansky et al., 2017, Specchia et al., 2017, Sturm et al., 2017, Vrettos et al., 2017, Yang and Xi, 2017, Blumenstiel et al., 2016, Chen et al., 2016, Fagegaltier et al., 2016, Haase, 2016, Hayashi et al., 2016, Hirakata and Siomi, 2016, Hur et al., 2016, Kelleher, 2016, Klein et al., 2016, Ku et al., 2016, Levine et al., 2016, Liu et al., 2016, Peng et al., 2016, Ryazansky et al., 2016, Tóth et al., 2016, Vourekas et al., 2016, Wang et al., 2016, Bozzetti et al., 2015, Chirn et al., 2015, Feltzin et al., 2015, Funikov et al., 2015, Gonzalez et al., 2015, Han et al., 2015, Hermant et al., 2015, Ishizu et al., 2015, Lee, 2015, Majumdar and Rio, 2015, Molla-Herman et al., 2015, Mugat et al., 2015, Ronsseray, 2015, Sato and Siomi, 2015, Sato et al., 2015, Wang et al., 2015, Yu et al., 2015, Basquin et al., 2014, Bronkhorst and van Rij, 2014, Coline et al., 2014, Dufourt and Vaury, 2014, Huang et al., 2014, Le Thomas et al., 2014, Mirkovic-Hösle and Förstemann, 2014, Patil et al., 2014, Ross et al., 2014, Satyaki et al., 2014, Song et al., 2014, Sytnikova et al., 2014, Théron et al., 2014, Wang et al., 2014, Wen et al., 2014, Zhang et al., 2014, Dennis et al., 2013, de Vanssay et al., 2013, Dönertas et al., 2013, Gao and Arkov, 2013, Guzzardo et al., 2013, Handler et al., 2013, Huang et al., 2013, Kelleher and Barbash, 2013, Le Thomas et al., 2013, Mani and Juliano, 2013, Olovnikov and Kalmykova, 2013, Olovnikov et al., 2013, Peng and Lin, 2013, Saito, 2013, Sato and Siomi, 2013, Sentmanat et al., 2013, Zanni et al., 2013, Anand and Kai, 2012, Bozzetti et al., 2012, Grentzinger et al., 2012, Kibanov et al., 2012, Kumar and Chen, 2012, Muerdter et al., 2012, Petit et al., 2012, Preall et al., 2012, Sienski et al., 2012, Simmons et al., 2012, Zhang et al., 2012, Castañeda et al., 2011, Ding and Lu, 2011, Handler et al., 2011, Huang et al., 2011, Ishizu et al., 2011, Juliano et al., 2011, Khurana et al., 2011, Kibanov et al., 2011, Kirino et al., 2011, Klenov et al., 2011, Pane et al., 2011, Pek and Kai, 2011, Rangan et al., 2011, Rozhkov et al., 2011, Shpiz and Kalmykova, 2011, Shpiz et al., 2011, Tchurikov and Kretova, 2011, Wang and Elgin, 2011, Yan et al., 2011, Zamparini et al., 2011, Zhang et al., 2011, Arkov and Ramos, 2010, Haase et al., 2010, Khurana and Theurkauf, 2010, Khurana et al., 2010, Lee and Langley, 2010, Liu and Paroo, 2010, Lu and Clark, 2010, Nagao et al., 2010, Olivieri et al., 2010, Patil and Kai, 2010, Rigoutsos, 2010, Rouget et al., 2010, Saito et al., 2010, Senti and Brennecke, 2010, Siomi et al., 2010, Siomi et al., 2010, Todeschini et al., 2010, Belinco et al., 2009, Halic and Moazed, 2009, Klattenhoff et al., 2009, Kotelnikov et al., 2009, Lau et al., 2009, Li et al., 2009, Lim et al., 2009, Malone and Hannon, 2009, Malone et al., 2009, Navarro et al., 2009, Nishida et al., 2009, Robine et al., 2009, Thomson and Lin, 2009, Brennecke et al., 2008, Chambeyron et al., 2008, Jensen et al., 2008, Klattenhoff and Theurkauf, 2008, Lin and Yin, 2008, Aravin et al., 2007, Brennecke et al., 2007, Hartig et al., 2007, Horwich et al., 2007, Lin, 2007, Nishida et al., 2007, O'Donnell and Boeke, 2007, Yin and Lin, 2007)
                    Name Synonyms
                    PIWI-interacting RNA
                    piwi-associated RNA
                    Secondary FlyBase IDs
                      Datasets (0)
                      Study focus (0)
                      Experimental Role
                      Project
                      Project Type
                      Title
                      References (226)