A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\CG43739

General Information
SymbolDmel\CG43739SpeciesD. melanogaster
NameAnnotation symbolCG43739
Feature typeprotein_coding_geneFlyBase IDFBgn0263996
Gene Model StatusCurrent Stock availability None publicly available
Genomic Location
Chromosome (arm)2LRecombination map
Cytogenetic map38F3-38F5Sequence location2L:20,871,335..20,918,931 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG43739 (FBgn0263996). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Gene sequence location is 2L:20871335..20918931.
User Contributed Data
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
38F3-38F5  
 
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG43739 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0081429 FBtr0307163 FBtr0081430 FBtr0333010 FBtr0301961 FBtr0081445 FBtr0081444 FBtr0089856 FBtr0081442 FBtr0330256 FBtr0081443 FBtr0081440 FBtr0081447 FBtr0330255 FBtr0081441 FBtr0081446 FBtr0330257 FBtr0330258 FBtr0081439 FBpp0080959 FBpp0305225 FBpp0297992 FBpp0080974 FBpp0080973 FBpp0291173 FBpp0303288 FBpp0080975 FBpp0080976 FBpp0303287 FBpp0080971 FBpp0080969 FBpp0080972 FBpp0303289 FBpp0080970 FBpp0303290 FBpp0080968 FBti0021664 FBti0053317 FBti0053178 FBti0044642 FBti0065505 FBti0044545 FBti0053103 FBti0054766 FBti0057781 FBti0040239 FBti0105223 FBti0068603 FBti0055203 FBti0102792 FBti0102975 FBti0024160 FBti0025971 FBti0071107 FBti0071088 FBti0069237 FBti0025976 FBti0111660 FBti0046852 FBti0108087 FBti0024832 FBti0147182 FBti0038082 FBti0071126 FBti0043459 FBti0050423 FBti0008832 FBti0033717 FBti0035901 FBti0106862 FBti0037441 FBti0110996 FBti0124890_2 FBti0049981 FBti0043239 FBti0047963 FBti0124890_1 FBti0103085 FBti0072424 FBti0054997 FBti0112642 FBti0112653 FBti0114994 FBti0065031 FBti0028383 FBti0034226 FBti0113233 FBti0069584 FBti0029080 FBti0017147 FBti0035796 FBti0069767 FBti0064868 FBti0111377 FBti0025996 FBti0107510 FBti0106260 FBti0108387
Comments on Gene Model
Gene model reviewed during 5.44
Gene model reviewed during 5.46
Gene model uncertain; ORF is conserved within Drosophila species.
gene_with_dicistronic_mRNA ; SO:0000722
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0330258
  4863
  15
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0303290  
1.7  
15  
12.50  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 (48)
head, virgin 1-day female
 (30)
head, virgin 4-day female
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 (32)
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 (43)
head, mated 4-day male
 (39)
head, mated 20-day male
 (37)
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 (37)
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 (27)
carcass, larvae L3 wandering
 (27)
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 (61)
ovary, mated 4-day female
 (66)
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 (48)
head, virgin 1-day female
 30
head, virgin 4-day female
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 (43)
head, mated 4-day male
 (39)
head, mated 20-day male
 (37)
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 (37)
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 27
carcass, larvae L3 wandering
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 (61)
ovary, mated 4-day female
 (66)
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 14
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 48
head, virgin 1-day female
 
 30
head, virgin 4-day female
 
 26
head, virgin 20-day female
 
 20
head, mated 1-day female
 
 32
head, mated 4-day female
 
 24
head, mated 20-day female
 
 19
head, mated 1-day male
 
 43
head, mated 4-day male
 
 39
head, mated 20-day male
 
 37
salivary gland, larvae L3 wandering
 
 4
salivary gland, white prepupae
 
 37
digestive system, larvae L3 wandering
 
 11
digestive system, 1-day adult
 
 11
digestive system, 4-day adult
 
 16
digestive system, 20-day adult
 
 13
fat body, larvae L3 wandering
 
 5
fat body, white prepupae
 
 16
fat body, pupae P8
 
 27
carcass, larvae L3 wandering
 
 27
carcass, 1-day adult
 
 21
carcass, 4-day adult
 
 23
carcass, 20-day adult
 
 18
ovary, virgin 4-day female
 
 61
ovary, mated 4-day female
 
 66
testis, mated 4-day male
 
 5
accessory gland, mated 4-day male
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (39)
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 26
adult female 05day
 (36)
adult female 30day
 (35)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (39)
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 26
adult female 05day
 (36)
adult female 30day
 (35)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 39
embryo 02-04hr
 
 8
embryo 04-06hr
 
 11
embryo 06-08hr
 
 10
embryo 08-10hr
 
 12
embryo 10-12hr
 
 10
embryo 12-14hr
 
 14
embryo 14-16hr
 
 15
embryo 16-18hr
 
 22
embryo 18-20hr
 
 20
embryo 20-22hr
 
 19
embryo 22-24hr
 
 26
larva L1
 
 17
larva L2
 
 10
larva L3 12hr old
 
 10
larva L3 puffstage 1-2
 
 11
larva L3 puffstage 3-6
 
 21
larva L3 puffstage 7-9
 
 22
white prepupae new
 
 21
white prepupae 12hr
 
 11
white prepupae 24hr
 
 15
pupae 2d postWPP
 
 21
pupae 3d postWPP
 
 23
pupae 4d postWPP
 
 21
adult male 01day
 
 23
adult male 05day
 
 21
adult male 30day
 
 19
adult female 01day
 
 26
adult female 05day
 
 36
adult female 30day
 
 35
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 (37)
embryonic GM2
 (33)
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 (31)
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 (37)
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 (35)
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 (32)
mixed discs ML-DmD4-c1
 (40)
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 (32)
ovary fGS/OSS
 
 22
ovary OSC
 (27)
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 (37)
embryonic GM2
 (33)
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 (37)
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 (35)
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 32
mixed discs ML-DmD4-c1
 (40)
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 32
ovary fGS/OSS
 
 22
ovary OSC
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 24
Schneider line 2 Sg4
 
 10
embryonic 1182-4H
 
 37
embryonic GM2
 
 33
embryonic Kc167
 
 25
embryonic S1
 
 20
embryonic S3
 
 19
leg disc CME L1
 
 11
wing disc CME-W2
 
 13
wing disc ML-DmD8
 
 31
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 37
wing disc ML-DmD21
 
 8
wing disc ML-DmD32
 
 14
haltere disc ML-DmD17-c3
 
 35
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 32
mixed discs ML-DmD4-c1
 
 40
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 12
tumorous blood cells mbn2
 
 32
ovary fGS/OSS
 
 22
ovary OSC
 
 27
ovary OSS
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 (56)
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 (91)
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 (30)
Ethanol 2.5% 3 hrs, larvae L3
 (33)
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (45)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 (29)
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 (56)
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 (91)
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 30
Ethanol 2.5% 3 hrs, larvae L3
 (33)
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (45)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 16
cold shock, 4-day adult
 
 12
heat shock, 4-day adult
 
 19
Cadmium 50 mM 6 hrs, larvae L3
 
 8
Cadmium 50 mM 12 hrs, larvae L3
 
 17
Cadmium 50 mM 48 hrs, 4-day adult
 
 23
Cadmium 100 mM 48 hrs, 4-day adult
 
 56
Copper 0.5 mM 12 hrs, larvae L3
 
 10
Copper 15 mM 48 hrs, 4-day adult
 
 91
Zinc 5 mM 12 hrs, larvae L3
 
 10
Zinc 4.5 mM 48 hrs, 4-day adult
 
 30
Ethanol 2.5% 3 hrs, larvae L3
 
 33
Ethanol 5% 3 hrs, larvae L3
 
 13
Ethanol 10% 3 hrs, larvae L3
 
 10
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 18
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 45
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 22
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 29
Rotenone 2 μg 12 hrs, larvae L3
 
 11
Rotenone 8 μg 12 hrs, larvae L3
 
 7
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

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Allele
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Allele of CG43739ClassMutagenStocksKnown lesion
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Allele of CG43739ClassMutagenStocksKnown lesion
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Transgenic Constructs
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Please look at the allele data for full details of the genetic interactions
CG43739 allele
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hide OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
No orthologs identified
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
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Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
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cDNA Clones, End Sequenced (ESTs)
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Additional comments
One or more of the processed
transcripts for these genes contain two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by CG43739 (FBgn0263996), sky (CG9339, FBgn0032901).
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New annotation (CG43739) in release 5.44 of the genome annotation.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
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Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 3 )
Supplementary material
Ladoukakis et al., 2011, Genome Biol. 12(11): R118
Additional file 4: Excel file with the sequences of 401 smORFs representing our conservative estimate. [FBrf0217420]
FlyBase analysis
FlyBase Genome Annotators, 2012, Changes affecting gene model number or type in release 5.44 of the annotated D.melanogaster genome.
Changes affecting gene model number or type in release 5.44 of the annotated D.melanogaster genome. [FBrf0216941]
Website
Fisher et al., 2012, BDGP insitu homepage
BDGP insitu homepage [FBrf0219073]