A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\gpp

General Information
SymbolDmel\gppSpeciesD. melanogaster
NamegrappaAnnotation symbolCG42803
Feature typeprotein_coding_geneFlyBase IDFBgn0264495
Gene Model StatusCurrent Stock availability 32 publicly available
Also Known AsCG10272, l(3)03342
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map83E6-83E7Sequence location3R:2,232,577..2,274,917 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene grappa is referred to in FlyBase by the symbol Dmel\gpp (CG42803, FBgn0264495). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: histone methyltransferase activity (H3-K79 specific). There is experimental evidence that it is involved in the biological process: positive regulation of gene silencing by miRNA; lateral inhibition. 47 alleles are reported. The phenotypes of these alleles are annotated with: eye; sex comb; arista; ommatidium. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: Histone H3-K79 methyltransferase; Histone H3-K79 methyltransferase, metazoa; Histone methylation DOT1. Gene sequence location is 3R:2232577..2274917.

User Contributed Data
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
83E6-83E7  
Limits computationally determined from genome sequence between P{lacW}casj1C2 and P{PZ}lab01241  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
83E-83E  
(determined by in situ hybridisation)  
83F1-83F2  
(determined by in situ hybridisation)  
83F1-83F2  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\gpp for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0289940 FBtr0290327 FBtr0300261 FBtr0289939 FBtr0290326 FBtr0334322 FBtr0303787 FBtr0303790 FBtr0303789 FBtr0303788 FBtr0334323 FBtr0330193 FBpp0292799 FBpp0292801 FBpp0306435 FBpp0292802 FBpp0292800 FBti0037065 FBti0100346 FBti0104571 FBti0109731 FBti0070732 FBti0104170 FBti0110959 FBti0018075 FBti0072185 FBti0107647 FBti0099961 FBti0105916 FBti0105207 FBti0108228 FBti0109315 FBti0055045 FBti0125935_1 FBti0047293 FBti0053407 FBti0125935_2 FBti0040083 FBti0052786 FBti0044729 FBti0051423 FBti0132554 FBti0066581 FBti0111972 FBti0037469 FBti0052072 FBti0046288 FBti0025593 FBti0059536 FBti0105347 FBti0106664 FBti0068152 FBti0005472 FBti0047854 FBti0048642 FBti0107284 FBti0036568 FBti0148721
Comments on Gene Model
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.47
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0303787
  7305
  1848
FBtr0303788
  7691
  1848
FBtr0303789
  8391
  2137
FBtr0303790
  10117
  1848
FBtr0334322
  8396
  1898
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
gpp-PB  
FBpp0292799  
201.3  
1848  
9.86  
gpp-PC  
FBpp0292800  
201.3  
1848  
9.86  
gpp-PD  
FBpp0292801  
231.6  
2137  
9.55  
gpp-PE  
FBpp0292802  
201.3  
1848  
9.86  
gpp-PF  
FBpp0306435  
206.5  
1898  
9.66  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (46)
central nervous system, larvae L3
 (38)
central nervous system, pupae P8
 (27)
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 (29)
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 (62)
ovary, mated 4-day female
 (83)
testis, mated 4-day male
 (39)
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (46)
central nervous system, larvae L3
 (38)
central nervous system, pupae P8
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 (62)
ovary, mated 4-day female
 (83)
testis, mated 4-day male
 (39)
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 46
central nervous system, larvae L3
 
 38
central nervous system, pupae P8
 
 27
head, virgin 1-day female
 
 15
head, virgin 4-day female
 
 14
head, virgin 20-day female
 
 11
head, mated 1-day female
 
 16
head, mated 4-day female
 
 13
head, mated 20-day female
 
 11
head, mated 1-day male
 
 23
head, mated 4-day male
 
 19
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 9
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 7
fat body, white prepupae
 
 23
fat body, pupae P8
 
 16
carcass, larvae L3 wandering
 
 29
carcass, 1-day adult
 
 10
carcass, 4-day adult
 
 11
carcass, 20-day adult
 
 9
ovary, virgin 4-day female
 
 62
ovary, mated 4-day female
 
 83
testis, mated 4-day male
 
 39
accessory gland, mated 4-day male
 
 9
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (36)
embryo 02-04hr
 (29)
embryo 04-06hr
 
 25
embryo 06-08hr
 (29)
embryo 08-10hr
 (35)
embryo 10-12hr
 
 23
embryo 12-14hr
 (32)
embryo 14-16hr
 (33)
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 (27)
adult female 30day
 (27)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (36)
embryo 02-04hr
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 29
embryo 08-10hr
 (35)
embryo 10-12hr
 
 23
embryo 12-14hr
 32
embryo 14-16hr
 (33)
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 27
adult female 30day
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 36
embryo 02-04hr
 
 29
embryo 04-06hr
 
 25
embryo 06-08hr
 
 29
embryo 08-10hr
 
 35
embryo 10-12hr
 
 23
embryo 12-14hr
 
 32
embryo 14-16hr
 
 33
embryo 16-18hr
 
 24
embryo 18-20hr
 
 19
embryo 20-22hr
 
 22
embryo 22-24hr
 
 22
larva L1
 
 8
larva L2
 
 5
larva L3 12hr old
 
 4
larva L3 puffstage 1-2
 
 4
larva L3 puffstage 3-6
 
 12
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 13
white prepupae 12hr
 
 15
white prepupae 24hr
 
 22
pupae 2d postWPP
 
 20
pupae 3d postWPP
 
 13
pupae 4d postWPP
 
 19
adult male 01day
 
 15
adult male 05day
 
 21
adult male 30day
 
 23
adult female 01day
 
 20
adult female 05day
 
 27
adult female 30day
 
 27
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 (34)
ovary OSC
 (27)
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 (34)
ovary OSC
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 21
Schneider line 2 Sg4
 
 5
embryonic 1182-4H
 
 25
embryonic GM2
 
 14
embryonic Kc167
 
 13
embryonic S1
 
 20
embryonic S3
 
 11
leg disc CME L1
 
 8
wing disc CME-W2
 
 8
wing disc ML-DmD8
 
 19
wing disc ML-DmD9
 
 16
wing disc ML-DmD16-c3
 
 20
wing disc ML-DmD21
 
 3
wing disc ML-DmD32
 
 13
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 14
antennal disc ML-DmD20-c5
 
 4
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 15
CNS ML-DmBG2-c2
 
 10
tumorous blood cells mbn2
 
 19
ovary fGS/OSS
 
 34
ovary OSC
 
 27
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 (28)
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 (66)
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 (48)
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 26
Ethanol 2.5% 3 hrs, larvae L3
 (47)
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (57)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 (30)
Paraquat 5 mM 48 hrs, 4-day adult
 (42)
Paraquat 10 mM 48 hrs, 4-day adult
 (43)
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 (66)
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 (48)
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 26
Ethanol 2.5% 3 hrs, larvae L3
 (47)
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (57)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 30
Paraquat 5 mM 48 hrs, 4-day adult
 (42)
Paraquat 10 mM 48 hrs, 4-day adult
 (43)
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 28
cold shock, 4-day adult
 
 23
heat shock, 4-day adult
 
 20
Cadmium 50 mM 6 hrs, larvae L3
 
 3
Cadmium 50 mM 12 hrs, larvae L3
 
 4
Cadmium 50 mM 48 hrs, 4-day adult
 
 24
Cadmium 100 mM 48 hrs, 4-day adult
 
 66
Copper 0.5 mM 12 hrs, larvae L3
 
 7
Copper 15 mM 48 hrs, 4-day adult
 
 48
Zinc 5 mM 12 hrs, larvae L3
 
 7
Zinc 4.5 mM 48 hrs, 4-day adult
 
 26
Ethanol 2.5% 3 hrs, larvae L3
 
 47
Ethanol 5% 3 hrs, larvae L3
 
 2
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 4
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 57
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 30
Paraquat 5 mM 48 hrs, 4-day adult
 
 42
Paraquat 10 mM 48 hrs, 4-day adult
 
 43
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 37 )
For All Classical Alleles Show

Allele of gppClassMutagenStocksKnown lesion
gppNP5372
2 --
gpp033421 Yes
gpp61A1 --
gppBG00006
1 --
gppc03951
1 --
gppCB-0347-3
1 --
gppd03021
1 --
gppe00213
1 --
gppe00987
1 --
gppe01765
1 --
gppe02709
1 --
gppe04070
1 --
gppf03758
1 --
gppf04922
1 --
gppf06155
1 --
gppf07224
1 --
gppGS13895
1 Yes
gppMI00944
1 --
gppMI02698
1 --
gppNP7436
1 --
gppXXV1 Yes
gpp093120 --
gpp1A0 --
gpp72A0 --
gpp80 --
gpp94A0 --
gppCB035670 Yes
gppDG10802
0 --
gppEY025910 --
gppf06793
0 --
gppGS17621
0 Yes
gppIN10 Yes
gppQ210X0 Yes
gppS073214b0 --
gppsA34840 --
gppunspecified
0 --
gppX0 Yes
hide Alleles Carried on Transgenic Constructs ( 10 )
For All Alleles Carried on Transgenic Constructs Show

Allele of gppClassMutagenStocksKnown lesion
gppGD160612 Yes
gppGD165061 Yes
gppGD69241 Yes
gppGL013251 Yes
gppHMJ021291 Yes
gppHMS001601 Yes
gppHMS026121 Yes
gppJF012831 Yes
gppJF012841 Yes
gppKK1078750 Yes
hide Aneuploid Aberrations
Not disrupted in
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
hide Terms Based on Experimental Evidence ( 3 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term
References
inferred from electronic annotation with InterPro:IPR021169
hide Sequence Ontology: Class of Gene
 
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hide Summary of Physical Interactions
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
gpp allele
Gene
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hide OrthoDB Orthologs (45) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6PVPJ0)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG6T1HVG)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6NVXF6)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB46691
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG003026
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH13801
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP19233
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO14371
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL16530
 
Linepithema humile
Argentine ant 
Lhum\LH12573
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB12155
 
Solenopsis invicta
Red fire ant 
Sinv\SINV26371
 
Solenopsis invicta
Red fire ant 
Sinv\SINV26373
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG612JM9)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG64V21H)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Caenorhabditis elegans
Nematode 
 
Caenorhabditis elegans
Nematode 
 
Caenorhabditis elegans
Nematode 
 
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (20) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila simulans
Drosophila sechellia
Drosophila sechellia
Drosophila erecta
Drosophila erecta
Drosophila yakuba
Drosophila yakuba
Drosophila ananassae
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila willistoni
Drosophila virilis
Drosophila virilis
Drosophila mojavensis
Drosophila mojavensis
Drosophila grimshawi
Drosophila grimshawi
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hide Stocks Listed in FlyBase ( 32 )
Harvard
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 97 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
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hide Etymology
The gene is named "grappa" because of the light yellow phenotype associated with the posterior-to-anterior transformation of the A5 and A6 male tergite plates seen in mutants (this light colour reminded one of the authors of a favourite drink from his not so distant youth and thus is the origin of the name).
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: CG10272 BcDNA:SD05230
Source for merge of: gpp anon-WO0118547.319
Source for merge of: gpp CG10272 l(3)03342
Source for merge of: gpp CG33324
Source for merge of: gpp l(3)S073214b
Additional comments
Annotations CG10272 and CG33324 merged as CG42803 in release 5.30 of the genome annotation.
The 3' exon of release 2 annotation CG10272 (which was deleted in the release 3.1 version of CG10272) has been restored as a distinct annotation, CG33324, in release 3.2 of the genome annotation.
Source for merge of gpp anon-WO0118547.319 was sequence comparison (date:051113).
Source for merge of CG10272 BcDNA:SD05230 was a shared cDNA (date:030728).
hide Other Comments
gpp mutants exhibit phenotypes and genetic interactions that are characteristic of both Polycomb-Group and trithorax-Group genes.
Area matching Drosophila EST AA735819.
A novel trithorax group gene, identified in a genetic screen devised for the isolation of dominant suppressors of pairing-sensitive miniwhite inactivation.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
hide Synonyms & Secondary IDs ( 17 )
Reported As
Symbol Synonym
anon-WO0118547.319
 
BcDNA:SD05230
 
CG33324
 
grp
 
l(3)S073214b
 
l(3)sA3484
 
Name Synonym
lethal (3) S073214b
 
Secondary FlyBase IDs
  • FBgn0010795
  • FBgn0011041
  • FBgn0014963
  • FBgn0037444
  • FBgn0046759
  • FBgn0053324
  • FBgn0060693
  • FBgn0062097
  • FBgn0261972
hide References ( 53 )
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hide Recent research papers ( 1 )
Pressman et al., 2012, G3 (Bethesda) 2(4): 437--448
A Systematic Genetic Screen to Dissect the MicroRNA Pathway in Drosophila. [FBrf0218180]
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All reviews listed in FlyBase were published before 2011