Gene Dmel\CG44001

FlyGene Wiki Help Close All Open All

General Information

Symbol

Dmel\CG44001

Species

D. melanogaster

Name

Annotation symbol

CG44001

Feature type

protein_coding_gene

FlyBase ID

FBgn0264743

Gene Model Status

Current

Stock availability

1 publicly available

Also Known As

CG31919

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

25C1-25C1

Sequence location

2L:5,043,270..5,048,365 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG44001 (FBgn0264743). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: Ankyrin repeat; Ankyrin repeat-containing domain. Gene sequence location is 2L:5043270..5048365.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.

FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

25C1-25C1

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG44001 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.47

gene_with_polycistronic_transcript ; SO:0000690

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG44001-RA

FBtr0334124

NM_135056

2691

181

CG44001-RB

FBtr0334125

NM_164622

2308

181

CG44001-RC

FBtr0334126

NM_164623

2281

181

CG44001-RD

FBtr0334127

NM_001169411

2415

181

CG44001-RE

FBtr0334128

NM_001038785

2431

181

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG44001-PA

FBpp0306241

20.4

181

7.22

NP_608900

AAF52208

CG44001-PB

FBpp0306242

20.4

181

7.22

NP_723051

AAN10524

CG44001-PC

FBpp0306243

20.4

181

7.22

NP_723052

AAN10525

CG44001-PD

FBpp0306244

20.4

181

7.22

NP_001162882

ACZ94173

CG44001-PE

FBpp0306245

20.4

181

7.22

NP_001033874

ABC65876

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Ankyrin repeat (IPR002110)

Ankyrin repeat-containing domain (IPR020683)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7KTP7

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		121
salivary gland, white prepupae		888
digestive system, larvae L3 wandering		153
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		114
carcass, larvae L3 wandering		110
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(43)
central nervous system, larvae L3		(59)
central nervous system, pupae P8		(105)
head, virgin 1-day female		(45)
head, virgin 4-day female		(40)
head, virgin 20-day female		(35)
head, mated 1-day female		(43)
head, mated 4-day female		(40)
head, mated 20-day female		(29)
head, mated 1-day male		(69)
head, mated 4-day male		(69)
head, mated 20-day male		(77)
salivary gland, larvae L3 wandering		(121)
salivary gland, white prepupae		(888)
digestive system, larvae L3 wandering		(153)
digestive system, 1-day adult		(47)
digestive system, 4-day adult		(40)
digestive system, 20-day adult		(37)
fat body, larvae L3 wandering		20
fat body, white prepupae		(91)
fat body, pupae P8		(114)
carcass, larvae L3 wandering		(110)
carcass, 1-day adult		(27)
carcass, 4-day adult		(32)
carcass, 20-day adult		(27)
ovary, virgin 4-day female		(52)
ovary, mated 4-day female		(42)
testis, mated 4-day male		(34)
accessory gland, mated 4-day male		(34)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		(121)
salivary gland, white prepupae		(888)
digestive system, larvae L3 wandering		(153)
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		(114)
carcass, larvae L3 wandering		(110)
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		121
salivary gland, white prepupae		888
digestive system, larvae L3 wandering		153
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		114
carcass, larvae L3 wandering		110
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		121
salivary gland, white prepupae		888
digestive system, larvae L3 wandering		153
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		114
carcass, larvae L3 wandering		110
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(43)
central nervous system, larvae L3		(59)
central nervous system, pupae P8		(105)
head, virgin 1-day female		(45)
head, virgin 4-day female		(40)
head, virgin 20-day female		(35)
head, mated 1-day female		(43)
head, mated 4-day female		(40)
head, mated 20-day female		29
head, mated 1-day male		(69)
head, mated 4-day male		(69)
head, mated 20-day male		(77)
salivary gland, larvae L3 wandering		(121)
salivary gland, white prepupae		(888)
digestive system, larvae L3 wandering		(153)
digestive system, 1-day adult		(47)
digestive system, 4-day adult		(40)
digestive system, 20-day adult		(37)
fat body, larvae L3 wandering		20
fat body, white prepupae		(91)
fat body, pupae P8		(114)
carcass, larvae L3 wandering		(110)
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		(52)
ovary, mated 4-day female		(42)
testis, mated 4-day male		(34)
accessory gland, mated 4-day male		(34)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		121
salivary gland, white prepupae		(888)
digestive system, larvae L3 wandering		(153)
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		114
carcass, larvae L3 wandering		110
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		43
central nervous system, larvae L3		59
central nervous system, pupae P8		105
head, virgin 1-day female		45
head, virgin 4-day female		40
head, virgin 20-day female		35
head, mated 1-day female		43
head, mated 4-day female		40
head, mated 20-day female		29
head, mated 1-day male		69
head, mated 4-day male		69
head, mated 20-day male		77
salivary gland, larvae L3 wandering		121
salivary gland, white prepupae		888
digestive system, larvae L3 wandering		153
digestive system, 1-day adult		47
digestive system, 4-day adult		40
digestive system, 20-day adult		37
fat body, larvae L3 wandering		20
fat body, white prepupae		91
fat body, pupae P8		114
carcass, larvae L3 wandering		110
carcass, 1-day adult		27
carcass, 4-day adult		32
carcass, 20-day adult		27
ovary, virgin 4-day female		52
ovary, mated 4-day female		42
testis, mated 4-day male		34
accessory gland, mated 4-day male		34
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		145
white prepupae new		229
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		108
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(43)
embryo 02-04hr		(31)
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		(30)
embryo 10-12hr		(45)
embryo 12-14hr		(43)
embryo 14-16hr		(54)
embryo 16-18hr		(84)
embryo 18-20hr		(62)
embryo 20-22hr		(42)
embryo 22-24hr		(47)
larva L1		(35)
larva L2		(44)
larva L3 12hr old		(42)
larva L3 puffstage 1-2		(41)
larva L3 puffstage 3-6		(70)
larva L3 puffstage 7-9		(145)
white prepupae new		(229)
white prepupae 12hr		(106)
white prepupae 24hr		(96)
pupae 2d postWPP		(108)
pupae 3d postWPP		(76)
pupae 4d postWPP		(45)
adult male 01day		(39)
adult male 05day		(43)
adult male 30day		(43)
adult female 01day		(34)
adult female 05day		(39)
adult female 30day		(39)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		(145)
white prepupae new		(229)
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		(108)
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		145
white prepupae new		229
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		108
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		145
white prepupae new		229
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		108
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(43)
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		(45)
embryo 12-14hr		(43)
embryo 14-16hr		(54)
embryo 16-18hr		(84)
embryo 18-20hr		(62)
embryo 20-22hr		(42)
embryo 22-24hr		(47)
larva L1		(35)
larva L2		(44)
larva L3 12hr old		(42)
larva L3 puffstage 1-2		(41)
larva L3 puffstage 3-6		(70)
larva L3 puffstage 7-9		(145)
white prepupae new		(229)
white prepupae 12hr		(106)
white prepupae 24hr		(96)
pupae 2d postWPP		(108)
pupae 3d postWPP		(76)
pupae 4d postWPP		(45)
adult male 01day		(39)
adult male 05day		(43)
adult male 30day		(43)
adult female 01day		(34)
adult female 05day		(39)
adult female 30day		(39)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		(145)
white prepupae new		(229)
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		108
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		43
embryo 02-04hr		31
embryo 04-06hr		19
embryo 06-08hr		23
embryo 08-10hr		30
embryo 10-12hr		45
embryo 12-14hr		43
embryo 14-16hr		54
embryo 16-18hr		84
embryo 18-20hr		62
embryo 20-22hr		42
embryo 22-24hr		47
larva L1		35
larva L2		44
larva L3 12hr old		42
larva L3 puffstage 1-2		41
larva L3 puffstage 3-6		70
larva L3 puffstage 7-9		145
white prepupae new		229
white prepupae 12hr		106
white prepupae 24hr		96
pupae 2d postWPP		108
pupae 3d postWPP		76
pupae 4d postWPP		45
adult male 01day		39
adult male 05day		43
adult male 30day		43
adult female 01day		34
adult female 05day		39
adult female 30day		39
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		115
embryonic GM2		97
embryonic Kc167		115
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		125
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(102)
Schneider line 2 Sg4		(102)
embryonic 1182-4H		(115)
embryonic GM2		(97)
embryonic Kc167		(115)
embryonic S1		(60)
embryonic S3		(71)
leg disc CME L1		(96)
wing disc CME-W2		(106)
wing disc ML-DmD8		(59)
wing disc ML-DmD9		(101)
wing disc ML-DmD16-c3		(29)
wing disc ML-DmD21		(104)
wing disc ML-DmD32		(81)
haltere disc ML-DmD17-c3		(59)
eye-antennal disc ML-DmD11		(96)
antennal disc ML-DmD20-c5		(125)
mixed discs ML-DmD4-c1		(55)
CNS ML-DmBG1-c1		(61)
CNS ML-DmBG2-c2		(57)
tumorous blood cells mbn2		(54)
ovary fGS/OSS		(30)
ovary OSC		(50)
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		(115)
embryonic GM2		97
embryonic Kc167		(115)
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		(125)
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		115
embryonic GM2		97
embryonic Kc167		115
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		125
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		115
embryonic GM2		97
embryonic Kc167		115
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		125
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(102)
Schneider line 2 Sg4		(102)
embryonic 1182-4H		(115)
embryonic GM2		(97)
embryonic Kc167		(115)
embryonic S1		(60)
embryonic S3		(71)
leg disc CME L1		(96)
wing disc CME-W2		(106)
wing disc ML-DmD8		(59)
wing disc ML-DmD9		(101)
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		(104)
wing disc ML-DmD32		(81)
haltere disc ML-DmD17-c3		(59)
eye-antennal disc ML-DmD11		(96)
antennal disc ML-DmD20-c5		(125)
mixed discs ML-DmD4-c1		(55)
CNS ML-DmBG1-c1		(61)
CNS ML-DmBG2-c2		(57)
tumorous blood cells mbn2		(54)
ovary fGS/OSS		30
ovary OSC		(50)
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		115
embryonic GM2		97
embryonic Kc167		115
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		125
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		102
Schneider line 2 Sg4		102
embryonic 1182-4H		115
embryonic GM2		97
embryonic Kc167		115
embryonic S1		60
embryonic S3		71
leg disc CME L1		96
wing disc CME-W2		106
wing disc ML-DmD8		59
wing disc ML-DmD9		101
wing disc ML-DmD16-c3		29
wing disc ML-DmD21		104
wing disc ML-DmD32		81
haltere disc ML-DmD17-c3		59
eye-antennal disc ML-DmD11		96
antennal disc ML-DmD20-c5		125
mixed discs ML-DmD4-c1		55
CNS ML-DmBG1-c1		61
CNS ML-DmBG2-c2		57
tumorous blood cells mbn2		54
ovary fGS/OSS		30
ovary OSC		50
ovary OSS		11
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(60)
cold shock, 4-day adult		(53)
heat shock, 4-day adult		(38)
Cadmium 50 mM 6 hrs, larvae L3		(52)
Cadmium 50 mM 12 hrs, larvae L3		(104)
Cadmium 50 mM 48 hrs, 4-day adult		(50)
Cadmium 100 mM 48 hrs, 4-day adult		(50)
Copper 0.5 mM 12 hrs, larvae L3		(29)
Copper 15 mM 48 hrs, 4-day adult		(46)
Zinc 5 mM 12 hrs, larvae L3		(39)
Zinc 4.5 mM 48 hrs, 4-day adult		(43)
Ethanol 2.5% 3 hrs, larvae L3		(41)
Ethanol 5% 3 hrs, larvae L3		(58)
Ethanol 10% 3 hrs, larvae L3		(56)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(54)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(37)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(36)
Paraquat 5 mM 48 hrs, 4-day adult		(43)
Paraquat 10 mM 48 hrs, 4-day adult		(47)
Rotenone 2 μg 12 hrs, larvae L3		(60)
Rotenone 8 μg 12 hrs, larvae L3		(43)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(60)
cold shock, 4-day adult		(53)
heat shock, 4-day adult		(38)
Cadmium 50 mM 6 hrs, larvae L3		(52)
Cadmium 50 mM 12 hrs, larvae L3		(104)
Cadmium 50 mM 48 hrs, 4-day adult		(50)
Cadmium 100 mM 48 hrs, 4-day adult		(50)
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		(46)
Zinc 5 mM 12 hrs, larvae L3		(39)
Zinc 4.5 mM 48 hrs, 4-day adult		(43)
Ethanol 2.5% 3 hrs, larvae L3		(41)
Ethanol 5% 3 hrs, larvae L3		(58)
Ethanol 10% 3 hrs, larvae L3		(56)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(54)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(37)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(36)
Paraquat 5 mM 48 hrs, 4-day adult		(43)
Paraquat 10 mM 48 hrs, 4-day adult		(47)
Rotenone 2 μg 12 hrs, larvae L3		(60)
Rotenone 8 μg 12 hrs, larvae L3		(43)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		60
cold shock, 4-day adult		53
heat shock, 4-day adult		38
Cadmium 50 mM 6 hrs, larvae L3		52
Cadmium 50 mM 12 hrs, larvae L3		104
Cadmium 50 mM 48 hrs, 4-day adult		50
Cadmium 100 mM 48 hrs, 4-day adult		50
Copper 0.5 mM 12 hrs, larvae L3		29
Copper 15 mM 48 hrs, 4-day adult		46
Zinc 5 mM 12 hrs, larvae L3		39
Zinc 4.5 mM 48 hrs, 4-day adult		43
Ethanol 2.5% 3 hrs, larvae L3		41
Ethanol 5% 3 hrs, larvae L3		58
Ethanol 10% 3 hrs, larvae L3		56
Caffeine 1.5 mg/ml 4 hrs, larvae L3		54
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		37
Caffeine 25 mg/ml 48 hrs, 4-day adult		36
Paraquat 5 mM 48 hrs, 4-day adult		43
Paraquat 10 mM 48 hrs, 4-day adult		47
Rotenone 2 μg 12 hrs, larvae L3		60
Rotenone 8 μg 12 hrs, larvae L3		43
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(Graveley et al., 2011)

mE1_20_mRNA_expression_cluster_15

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of CG44001	Class	Mutagen	Stocks	Known lesion
CG44001^EY22291		P-element activity	1	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG44001	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

insertion of mobile activating element

P{EPgy2}EY22291

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene_with_polycistronic_transcript

(FlyBase Genome Annotators, 2012)

protein_coding_gene

(FlyBase Genome Annotators, 2012)

Interactions & Pathways

Summary of Physical Interactions

protein-protein

Interacting group

Assay

References

CG44001 - CG9577

anti tag coimmunoprecipitation, peptide massfingerprinting

(Mintseris et al., 2009.11.23)

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG44001 allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups - Dmel gene model changed subsequent to version 5.45

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG61NV64

Dipteran inclusive ortholog search

EOG6J9N7R

Insect inclusive ortholog search

EOG6ZW46V

Arthropod inclusive ortholog search

EOG6VMCX4

Metazoa inclusive ortholog search

EOG6SV50V

Orthologs in Drosophila Species (EOG61NV64)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\CG44001

Drosophila melanogaster

fruit fly

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA16564

Drosophila persimilis

Dper\GL26548

Drosophila willistoni

Dwil\GK24860

Drosophila virilis

Dvir\GJ17229

Drosophila mojavensis

Dmoj\GI16982

Drosophila grimshawi

Dgri\GH11486

Orthologs in non-Drosophila Dipterans (EOG6J9N7R)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL013941

Anopheles gambiae

Malaria mosquito

Agam\AGAP009205

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ802367

Orthologs in non-Dipteran Insects (EOG6ZW46V)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB45961

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG002583

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH12774

Atta cephalotes

Leafcutter ant

Acep\ACEP22097

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO15755

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL18341

Linepithema humile

Argentine ant

Lhum\LH20366

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB11976

Solenopsis invicta

Red fire ant

Sinv\SINV21538

Bombyx mori

Silkmoth

Bmor\BGIBMGA005905

Pediculus humanus

Human body louse

Phum\PHUM582940

Tribolium castaneum

Red flour beetle

Tcas\TC002310

Tribolium castaneum

Red flour beetle

Tcas\TC010921

Tribolium castaneum

Red flour beetle

Tcas\TC010289

Tribolium castaneum

Red flour beetle

Tcas\TC010922

Orthologs in non-Insect Arthropods (EOG6VMCX4)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Ixodes scapularis

Deer tick

Isca\ISCW024446

Orthologs in non-Arthropod Metazoa (EOG6SV50V)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_012060gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_022583gn

Danio rerio

Zebrafish

Drer\si:ch211-178d20.1

Xenopus tropicalis

Western clawed frog

Xtro\ENSXETG00000031480

Mus musculus

House mouse

Mmus\Ankrd39

Rattus norvegicus

Norway rat

Rnor\Ankrd39

Homo sapiens

Human

Hsap\ANKRD39

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\ANKRD39

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 1 )

Bloomington

22550

y¹ w^67c23; P{EPgy2}EY22291

Genomic Clones ( 1 )

BACR13M11

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 115 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

IP13768

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: CG5822 CG31919

(FlyBase, 1996-)

Additional comments

Annotation CG31919 split into CG44000 and CG44001 in release 5.47 of the genome annotation. The two release 5.47 annotations each represent a non-overlapping open reading frame which are both encoded by a dicistronic processed transcript.

(FlyBase Genome Annotators, 2012)

Source for merge of CG5822 CG31919 was a shared cDNA (date:030728).

(FlyBase, 1996-, FlyBase Genome Annotators, 2005)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

326173

UniProtKB/TrEMBL

•

Q7KTP7

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Ankyrin repeat (IPR002110)

Ankyrin repeat-containing domain (IPR020683)

Linkouts

Synonyms & Secondary IDs ( 4 )

Reported As

Symbol Synonym

CG5822

(Freeman et al., 2003)

CG31919

(Hayden and Bosco, 2008, Brandt, 2006)

CG44001

Dromel_CG31919_FBtr0079006_mORF

(Hayden and Bosco, 2008)

Name Synonym

Secondary FlyBase IDs

FBgn0031674

References ( 13 )

Research paper

Hayden and Bosco, 2008, BMC Genomics 9: 61: Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species. [FBrf0204849]
Freeman et al., 2003, Neuron 38(4): 567--580: Unwrapping glial biology: gcm target genes regulating glial development, diversification, and function. [FBrf0160527]

Supplementary material

Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
Hayden and Bosco, 2008, BMC Genomics:: File 1: Conserved peptide uORF and associated mORF amino acid sequences in Drosophila melanogaster. [FBrf0205942]
Brandt, 2006, Curr. Biol. 16(6):: Supplemental Data. [FBrf0208876]
Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project: DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452]
Bellen, 2006.8.3, MBBatch686_2.xml: MBBatch686_2.xml [FBrf0191805]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]

FlyBase analysis

FlyBase Genome Annotators, 2012, Changes affecting gene model number or type in release 5.47 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.47 of the annotated D.melanogaster genome. [FBrf0218597]
FlyBase Genome Annotators, 2005, Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 4.3 of the annotated D.melanogaster genome. [FBrf0188580]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]
FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]