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General Information
Symbol
Dmel\Tep5Ψ
Species
D. melanogaster
Name
Thioester-containing protein 5 pseudogene
Annotation Symbol
CR13079
Feature Type
FlyBase ID
FBgn0264845
Gene Model Status
Stock Availability
Gene Summary
Contribute a Gene Snapshot for this gene.
Also Known As

Tep5, TepV, dTEPV

Key Links
Genomic Location
Cytogenetic map
Sequence location
2L:19,558,916..19,563,049 [+]
Recombination map
2-54
RefSeq locus
NT_033779 REGION:19558916..19563049
Sequence
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (0 terms)
Molecular Function (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (0 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Model and Products
    Number of Transcripts
    1
    Number of Unique Polypeptides
    0

    Please see the JBrowse view of Dmel\Tep5Ψ for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Comments on Gene Model

    Pseudogene similar to Tep4; proximate; corresponds to Tep5 (TepV) in related species.

    Gene model reviewed during 5.44

    Gene model reviewed during 6.28

    Sequence Ontology: Class of Gene
    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    FBtr0475187
    3921
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Tep5Ψ using the Feature Mapper tool.

    External Data
    Crossreferences
    Linkouts
    Expression Data
    Expression Summary Ribbons
    Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
    For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
    Transcript Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Polypeptide Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    GBrowse - Visual display of RNA-Seq signals

    View Dmel\Tep5Ψ in GBrowse 2
    RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    EMBL-EBI Single Cell Expression Atlas
    Images
    Alleles, Insertions, Transgenic Constructs, and Aberrations
    Classical and Insertion Alleles ( 3 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 3 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of Tep5Ψ
    Transgenic constructs containing regulatory region of Tep5Ψ
    Aberrations (Deficiencies and Duplications) ( 1 )
    Inferred from experimentation ( 1 )
    Gene disrupted in
    Inferred from location ( 0 )
    Alleles Representing Disease-Implicated Variants
    Phenotypes
    For more details about a specific phenotype click on the relevant allele symbol.
    Phenotype manifest in
    Allele
    Orthologs
    Human Orthologs (via DIOPT v8.0)
    Homo sapiens (Human) (15)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Alignment
    Complementation?
    Transgene?
    7 of 15
    Yes
    No
    5 of 15
    No
    No
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    No
    4 of 15
    No
    Yes
    4 of 15
    No
    Yes
    4 of 15
    No
    Yes
    3 of 15
    No
    Yes
    1 of 15
    No
    Yes
    1 of 15
    No
    Yes
    Hsap\LOC110384692
    1 of 15
    No
    Yes
    1 of 15
    No
    Yes
    1 of 15
    No
    Yes
    1 of 15
    No
    No
    Model Organism Orthologs (via DIOPT v8.0)
    Mus musculus (laboratory mouse) (12)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Alignment
    Complementation?
    Transgene?
    7 of 15
    Yes
    No
    5 of 15
    No
    No
    5 of 15
    No
    Yes
    5 of 15
    No
    No
    5 of 15
    No
    No
    5 of 15
    No
    Yes
    4 of 15
    No
    Yes
    4 of 15
    No
    Yes
    4 of 15
    No
    Yes
    2 of 15
    No
    Yes
    1 of 15
    No
    Yes
    1 of 15
    No
    Yes
    Rattus norvegicus (Norway rat) (17)
    6 of 13
    Yes
    No
    5 of 13
    No
    Yes
    5 of 13
    No
    Yes
    5 of 13
    No
    Yes
    5 of 13
    No
    Yes
    4 of 13
    No
    Yes
    4 of 13
    No
    Yes
    4 of 13
    No
    Yes
    4 of 13
    No
    Yes
    4 of 13
    No
    Yes
    4 of 13
    No
    Yes
    3 of 13
    No
    Yes
    2 of 13
    No
    Yes
    2 of 13
    No
    Yes
    2 of 13
    No
    Yes
    2 of 13
    No
    Yes
    1 of 13
    No
    Yes
    Xenopus tropicalis (Western clawed frog) (51)
    4 of 12
    Yes
    Yes
    4 of 12
    Yes
    Yes
    4 of 12
    Yes
    Yes
    4 of 12
    Yes
    Yes
    4 of 12
    Yes
    Yes
    4 of 12
    Yes
    Yes
    3 of 12
    No
    Yes
    2 of 12
    No
    No
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    2 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    1 of 12
    No
    Yes
    Danio rerio (Zebrafish) (32)
    6 of 15
    Yes
    No
    5 of 15
    No
    No
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    5 of 15
    No
    Yes
    4 of 15
    No
    Yes
    4 of 15
    No
    Yes
    4 of 15
    No
    No
    3 of 15
    No
    Yes
    3 of 15
    No
    Yes
    3 of 15
    No
    Yes
    3 of 15
    No
    Yes
    2 of 15
    No
    Yes
    2 of 15
    No
    No
    2 of 15
    No
    Yes
    2 of 15
    No
    Yes
    2 of 15
    No
    Yes
    2 of 15
    No
    Yes
    1 of 15
    No
    Yes
    1 of 15
    No
    Yes
    Caenorhabditis elegans (Nematode, roundworm) (2)
    5 of 15
    Yes
    No
    2 of 15
    No
    Yes
    Arabidopsis thaliana (thale-cress) (0)
    No records found.
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    No records found.
    Schizosaccharomyces pombe (Fission yeast) (0)
    No records found.
    Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG091901AP )
    Organism
    Common Name
    Gene
    AAA Syntenic Ortholog
    Multiple Dmel Genes in this Orthologous Group
    Drosophila simulans
    Drosophila sechellia
    Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( None identified )
    No non-Drosophilid orthologies identified
    Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W01MA )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Bombyx mori
    Silkmoth
    Bombyx mori
    Silkmoth
    Danaus plexippus
    Monarch butterfly
    Danaus plexippus
    Monarch butterfly
    Heliconius melpomene
    Postman butterfly
    Heliconius melpomene
    Postman butterfly
    Apis florea
    Little honeybee
    Apis florea
    Little honeybee
    Apis mellifera
    Western honey bee
    Apis mellifera
    Western honey bee
    Apis mellifera
    Western honey bee
    Bombus impatiens
    Common eastern bumble bee
    Bombus impatiens
    Common eastern bumble bee
    Bombus terrestris
    Buff-tailed bumblebee
    Bombus terrestris
    Buff-tailed bumblebee
    Linepithema humile
    Argentine ant
    Linepithema humile
    Argentine ant
    Megachile rotundata
    Alfalfa leafcutting bee
    Megachile rotundata
    Alfalfa leafcutting bee
    Nasonia vitripennis
    Parasitic wasp
    Nasonia vitripennis
    Parasitic wasp
    Dendroctonus ponderosae
    Mountain pine beetle
    Dendroctonus ponderosae
    Mountain pine beetle
    Tribolium castaneum
    Red flour beetle
    Tribolium castaneum
    Red flour beetle
    Pediculus humanus
    Human body louse
    Pediculus humanus
    Human body louse
    Rhodnius prolixus
    Kissing bug
    Cimex lectularius
    Bed bug
    Acyrthosiphon pisum
    Pea aphid
    Zootermopsis nevadensis
    Nevada dampwood termite
    Zootermopsis nevadensis
    Nevada dampwood termite
    Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X01KB )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Strigamia maritima
    European centipede
    Strigamia maritima
    European centipede
    Strigamia maritima
    European centipede
    Ixodes scapularis
    Black-legged tick
    Ixodes scapularis
    Black-legged tick
    Ixodes scapularis
    Black-legged tick
    Stegodyphus mimosarum
    African social velvet spider
    Stegodyphus mimosarum
    African social velvet spider
    Stegodyphus mimosarum
    African social velvet spider
    Stegodyphus mimosarum
    African social velvet spider
    Tetranychus urticae
    Two-spotted spider mite
    Daphnia pulex
    Water flea
    Daphnia pulex
    Water flea
    Daphnia pulex
    Water flea
    Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G00F8 )
    Organism
    Common Name
    Gene
    Multiple Dmel Genes in this Orthologous Group
    Gallus gallus
    Domestic chicken
    Paralogs
    Paralogs (via DIOPT v8.0)
    Drosophila melanogaster (Fruit fly) (5)
    6 of 10
    5 of 10
    5 of 10
    5 of 10
    4 of 10
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Model Summary Ribbon
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 6 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      esyN Network Diagram
      Interactions Browser
      Summary of Genetic Interactions
      esyN Network Diagram
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      DroID - A comprehensive database of gene and protein interactions.
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      External Data
      Linkouts
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2L
      Recombination map
      2-54
      Cytogenetic map
      Sequence location
      2L:19,558,916..19,563,049 [+]
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      37F1-37F1
      Left limit from (method unavailable) (FBrf0126883) Right limit from (method unavailable) (FBrf0126883); Limits computationally determined from genome sequence between P{EP}EP623&P{PZ}spi01068 and P{lacW}l(2)k10239k10239
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      Experimentally Determined Recombination Data
      Location
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (5)
      Genomic Clones (12)
       

      Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

      cDNA Clones (1)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequenced
      BDGP DGC clones
        Other clones
          Drosophila Genomics Resource Center cDNA clones

          For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
              Other clones
                RNAi and Array Information
                Linkouts
                GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                Antibody Information
                Laboratory Generated Antibodies
                 
                Commercially Available Antibodies
                 
                Other Information
                Relationship to Other Genes
                Source for database identify of
                Source for database merge of

                Source for merge of: CG13079 CG13080

                Source for merge of: TepV CG13079

                Additional comments

                Annotations CG13079 and CG13080 merged as CG13080 in release 3 of the genome annotation.

                Other Comments

                CR13079 reclassified as a pseudogene gene in r6.28.

                Origin and Etymology
                Discoverer
                Etymology
                Identification
                External Crossreferences and Linkouts ( 9 )
                Sequence Crossreferences
                NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
                GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
                Other crossreferences
                EMBL-EBI Single Cell Expression Atlas
                GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                KEGG Genes - Molecular building blocks of life in the genomic space.
                MARRVEL_MODEL
                Linkouts
                DroID - A comprehensive database of gene and protein interactions.
                Synonyms and Secondary IDs (12)
                Reported As
                Name Synonyms
                Thioester-containing protein 5
                Thioester-containing protein 5 pseudogene
                Thiolester containing protein V
                Secondary FlyBase IDs
                • FBgn0032808
                • FBgn0032807
                • FBgn0041179
                Datasets (0)
                Study focus (0)
                Experimental Role
                Project
                Project Type
                Title
                References (30)