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Gene Dmel\CG44085

General Information
Symbol	Dmel\CG44085	Species	D. melanogaster
Name		Annotation symbol	CG44085
Feature type	protein_coding_gene	FlyBase ID	FBgn0264894
Gene Model Status	Current	Stock availability	9 publicly available
Also Known As	CG6043, CG6108
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	34B3-34B4	Sequence location	2L:13,261,008..13,284,043 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG44085 (FBgn0264894). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 9 alleles are reported. No phenotypic data is available. It has 13 annotated transcripts and 13 annotated polypeptides. Gene sequence location is 2L:13261008..13284043.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 34B3-34B4   Limits computationally determined from genome sequence between P{EP}EP850&P{lacW}l(2)k05911k05911 and P{lacW}l(2)k07914k07914&P{lacW}Nnp-1k07826
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG44085 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Alternative translation stop created by use of multiphasic reading frames within coding region. Annotated transcripts do not represent all supported alternative splices within 5' UTR. Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG44085-RC FBtr0334851  NM_165037   3868   836 CG44085-RD FBtr0334852  NM_135785   3768   918 CG44085-RF FBtr0334854  NM_001103686   4043   902 CG44085-RG FBtr0334855  NM_001103687   3840   942 CG44085-RH FBtr0334853  NM_165035   3282   756 CG44085-RI FBtr0334857  NM_001169497   3661   833 CG44085-RJ FBtr0334858  NM_001169498   3864   979 CG44085-RK FBtr0334859  NM_001169499   3856   979 CG44085-RL FBtr0334860  NM_165034   3418   833 CG44085-RM FBtr0334856  NM_001259090   3494   864 CG44085-RN FBtr0334861  NM_001259091   3940   1007 CG44085-RO FBtr0334862  NM_001273511   8804   2381 CG44085-RP FBtr0334863  NM_135786   8383   2246
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG44085-PC   FBpp0306875   91.6   836   10.50     NP_723804   AAN10833 CG44085-PD   FBpp0306876   100.8   918   10.43     NP_609629   AAN10830 CG44085-PF   FBpp0306878   99.1   902   10.43     NP_001097156   ABV53676 CG44085-PG   FBpp0306879   103.7   942   10.33     NP_001097157   ABV53677 CG44085-PH   FBpp0306877   83.0   756   10.47     NP_723802   AAN10831 CG44085-PI   FBpp0306881   91.5   833   10.37     NP_001162968   ACZ94254 CG44085-PJ   FBpp0306882   107.6   979   10.35     NP_001162969   ACZ94255 CG44085-PK   FBpp0306883   107.6   979   10.35     NP_001162970   ACZ94256 CG44085-PL   FBpp0306884   91.5   833   10.37     NP_723801   AAF53274 CG44085-PM   FBpp0306880   95.6   864   10.27     NP_001246019   AFH03693 CG44085-PN   FBpp0306885   111.0   1007   10.27     NP_001246020   AFH03694 CG44085-PO   FBpp0306886   266.8   2381   4.52     NP_001260440   AGB92975 CG44085-PP   FBpp0306887   251.7   2246   4.51     NP_609630   AAF53275
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF53274   AE014134 AAF53275   AE014134 AAN10830   AE014134 AAN10831   AE014134 AAN10833   AE014134 ABV53676   AE014134 ABV53677   AE014134 ACZ94254   AE014134 ACZ94255   AE014134 ACZ94256   AE014134 AFH03693   AE014134 AFH03694   AE014134 AGB92975   AI389220   AI404391   AY128472 AAM75065   BI232209   BI362772   BI482335   BT003186 AAO24941   BT024944   BT083391   BT088972   CA804321   CO178211   CO186249   CO272194   CO272908   CO276083   CO285821   CO299555   CO305544   CO320567   CO322698   CO327155   CO328497   CO331879   CO343382   EC057778   EC071491   EC074551   EC079182   EC218575   EC220667   EC237903   EC239238   EC241815   EC251565   EC254084   EL885156   EV594305   GH941293   GH941409   GH943277   GH944738   GH946058   GH947155   GH948510   GH949230   GH952546   GH954716   GH957149   GH957821   GH957998   GH962566   GH962938   GH963549   GH967482   GH970477   GH973555   GH973660   GH984020
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MQP0 A8DZ00 C3KKC6 Q8IP74 A8DYZ9 A4V0N7 Q86PD9 E1JHH0 Q8IP76 Q9VK08
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic epipharynx   (Fisher et al., 2012) embryonic hypopharynx   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  (94) digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering  26 carcass, 1-day adult  (42) carcass, 4-day adult  (34) carcass, 20-day adult  (30) ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  (94) digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering  26 carcass, 1-day adult  (42) carcass, 4-day adult  (34) carcass, 20-day adult  30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    2 central nervous system, larvae L3    3 central nervous system, pupae P8    6 head, virgin 1-day female    15 head, virgin 4-day female    18 head, virgin 20-day female    8 head, mated 1-day female    17 head, mated 4-day female    12 head, mated 20-day female    9 head, mated 1-day male    19 head, mated 4-day male    12 head, mated 20-day male    10 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    94 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    4 digestive system, 4-day adult    6 digestive system, 20-day adult    6 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    13 carcass, larvae L3 wandering    26 carcass, 1-day adult    42 carcass, 4-day adult    34 carcass, 20-day adult    30 ovary, virgin 4-day female    2 ovary, mated 4-day female    1 testis, mated 4-day male    2 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr  (31) embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old  (31) larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP  (36) pupae 3d postWPP    21 pupae 4d postWPP  (62) adult male 01day    23 adult male 05day  (27) adult male 30day  (31) adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr  31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old  31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP  (36) pupae 3d postWPP    21 pupae 4d postWPP  (62) adult male 01day    23 adult male 05day  27 adult male 30day  31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    2 embryo 14-16hr    9 embryo 16-18hr    20 embryo 18-20hr    31 embryo 20-22hr    21 embryo 22-24hr    23 larva L1    22 larva L2    19 larva L3 12hr old    31 larva L3 puffstage 1-2    10 larva L3 puffstage 3-6    17 larva L3 puffstage 7-9    13 white prepupae new    6 white prepupae 12hr    19 white prepupae 24hr    8 pupae 2d postWPP    36 pupae 3d postWPP    21 pupae 4d postWPP    62 adult male 01day    23 adult male 05day    27 adult male 30day    31 adult female 01day    18 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    3 embryonic 1182-4H    3 embryonic GM2    1 embryonic Kc167    0 embryonic S1    2 embryonic S3    0 leg disc CME L1    5 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    9 wing disc ML-DmD21    0 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    5 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    10 ovary fGS/OSS    1 ovary OSC    1 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult  26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult  26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    18 cold shock, 4-day adult    16 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    14 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    17 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    18 Ethanol 5% 3 hrs, larvae L3    14 Ethanol 10% 3 hrs, larvae L3    12 Caffeine 1.5 mg/ml 4 hrs, larvae L3    16 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    17 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    21 Paraquat 10 mM 48 hrs, 4-day adult    26 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_15
External Data & Images
Linkouts	BDGP expression data • MIP09443
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 CG44085GD16269 viable, with Scer\GAL4pnr-MD237 CG44085GD11821 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of CG44085 Class Mutagen Stocks Known lesion CG44085c03279 2 -- CG44085MB03357 1 -- CG44085MI01516 1 -- CG44085MI06605 1 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG44085 Class Mutagen Stocks Known lesion CG44085GD11821 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG44085GD16269 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG44085KK106973 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG44085dsRNA.cMa in vitro construct - RNAi 0 -- CG44085NIG.6043R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{NIG.6043R} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(2)SH1871SH1871 No miscellaneous insertions Mi{MIC}CG44085MI01516 NA Mi{MIC}CG44085MI06605 NA PBac{PB}CG44085c03279 NA insertion of enhancer trap binary system Mi{ET1}CG44085MB03357 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene_with_edited_transcript (Graveley et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG44085 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (14) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6CC4MK, EOG6868XZ Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6CC4MK, EOG6868XZ)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG44085     Drosophila simulans   Dsim\GD23883 Y   Drosophila sechellia   Dsec\GM10366 Y   Drosophila erecta   Dere\GG23833 Y   Drosophila yakuba   Dyak\GE18638 Y   Drosophila ananassae   Dana\GF20035 Y   Drosophila ananassae   Dana\GF23107 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA28815 Y   Drosophila persimilis   Dper\GL26322 Y   Drosophila willistoni   Dwil\GK14833 Y   Drosophila willistoni   Dwil\GK14832 Y   Drosophila virilis   Dvir\GJ17964 Y   Drosophila mojavensis   Dmoj\GI17206 Y   Drosophila grimshawi   Dgri\GH25097 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (14) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23883 Drosophila sechellia Dsec\GM10366 Drosophila erecta Dere\GG23833 Drosophila yakuba Dyak\GE18638 Drosophila ananassae Dana\GF20035 Drosophila ananassae Dana\GF23107 Drosophila pseudoobscura pseudoobscura Dpse\GA28815 Drosophila persimilis Dper\GL26321 Drosophila persimilis Dper\GL26322 Drosophila willistoni Dwil\GK14832 Drosophila willistoni Dwil\GK14833 Drosophila virilis Dvir\GJ17964 Drosophila mojavensis Dmoj\GI17206 Drosophila grimshawi Dgri\GH25097
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	11227 w1118; PBac{PB}CG44085c03279 23535 w1118; Mi{ET1}CG44085MB03357 33124 y1 w*; Mi{MIC}CG44085MI01516 41103 y1 w*; Mi{MIC}CG44085MI06605
Harvard	- PBac{PB}CG44085c03279
VDRC	v104708 P{KK106973}VIE-260B v48541 w1118 P{GD16269}v48541 v30121 w1118; P{GD11821}v30121 v30122 w1118; P{GD11821}v30122
Genomic Clones ( 1 )
	BACR04E19 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 52 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP16026 RE28238 RE65015
Other clones	IP16126 MIP09443
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH20342 GH24071 RE47429
Other clones	62871 146189 CK01.50A.D4 CK01.70B.E6 CK01.145C.B2 Dmel_neb_009853_0684_1618 EC254084 EK017706 EK056051 EK060816 EK106164 EK108755 EK119637 EK175807 EK188657 EK248923 EK286260 EK301912 EP06014 EP09314 EP16701 ESG0113a.B21_E11 IP16326 RP004045298 RP004049493 RP004065031 RP004109397 RP004143391 RP004186877 RP004195620 RP004203259 RP004212686 RP004223234 RP004237808 RP004252987 RP004268131 RP004268751 RP004378149 RP004379502 RP004426356 RP004466879 RP004513604 RP004519717 RP004524058
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG6043 CG6108 (FlyBase Genome Annotators, 2012)
Additional comments	Annotations CG6043 and CG6108 merged as CG44085 in release 5.47 of the genome annotation. Merge supported by RNA-seq junction data. (FlyBase Genome Annotators, 2012)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135785 NM_135786 NM_165034 NM_165035 NM_165037 NM_001103686 NM_001103687 NM_001169497 NM_001169498 NM_001169499 NM_001259090 NM_001259091 NM_001273511 RefSeq (Proteins) • NP_609629 NP_609630 NP_723801 NP_723802 NP_723804 NP_001097156 NP_001097157 NP_001162968 NP_001162969 NP_001162970 NP_001246019 NP_001246020 NP_001260440 DDBJ / EMBL / GenBank • AAF53274 AAF53275 AAM75065 AAN10830 AAN10831 AAN10833 AAO24941 ABV53676 ABV53677 ACZ94254 ACZ94255 ACZ94256 AFH03693 AFH03694 AGB92975 AY128472 BI232209 BI482335 BT003186 Entrez Gene - A searchable database of RefSeq genes. • 34732 34733 UniProtKB/TrEMBL • A4V0N7 A8DYZ9 A8DZ00 C3KKC6 E1JHH0 Q8IP74 Q8IP76 Q8MQP0 Q9VK08 Q86PD9
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • MIP09443
Linkouts
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG6043 (Mack et al., 2006, Ma et al., 2006, Japanese National Institute of Genetics, 2012.5.21) CG6108 (Dorus et al., 2006, Keleman et al., 2009.8.5) CG44085 (FlyBase Genome Annotators, 2012)
Name Synonym
Secondary FlyBase IDs
	FBgn0032497 FBgn0032498
References ( 21 )
Generate a list of	All references relating to this gene ( 21 )
List References by type	Research paper  ( 2 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 3 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...