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Gene Dmel\koi

General Information
Symbol	Dmel\koi	Species	D. melanogaster
Name	klaroid	Annotation symbol	CG44154
Feature type	protein_coding_gene	FlyBase ID	FBgn0265003
Gene Model Status	Current	Stock availability	11 publicly available
Also Known As	CG3287, CG18584, BEST:LD11166
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	42D4-42D4	Sequence location	2R:2,698,524..2,705,704 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene klaroid is referred to in FlyBase by the symbol Dmel\koi (CG44154, FBgn0265003). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: nuclear migration. 17 alleles are reported. The phenotypes of these alleles are annotated with: rhabdomere; eye; trichogen cell. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Sad1/UNC-like, C-terminal. Gene sequence location is 2R:2698524..2705704.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 42D4-42D4   Limits computationally determined from genome sequence between P{lacW}ublk03203&P{PZ}CG328709967 and P{EP}EP2303&P{EP}EP2105
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\koi for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) koi-RA FBtr0335512  NM_001273809   4276   965 koi-RB FBtr0335513  NM_136396   4100   881 koi-RC FBtr0335514  NM_001273810   4233   965 koi-RD FBtr0335515  NM_165491   2030   449 koi-RE FBtr0335516  NM_165492   1856   365 koi-RF FBtr0335517  NM_001273811   1989   449
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein koi-PA   FBpp0307480   109.7   965   7.15     NP_001260738   AGB93271 koi-PB   FBpp0307481   100.1   881   7.01     NP_610240   AAF57400 koi-PC   FBpp0307482   109.7   965   7.15     NP_001260739   AGB93272 koi-PD   FBpp0307483   51.8   449   9.44     NP_724502   AAG22207 koi-PE   FBpp0307484   42.2   365   9.65     NP_724503   AAM70833 koi-PF   FBpp0307485   51.8   449   9.44     NP_001260740   AGB93273
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Sad1/UNC-like, C-terminal (IPR012919)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263376   AA390381   AA391710   AA392328   AA439954   AA541092   AA820891   AA950959   AE013599 AAF57400   AE013599 AAG22207   AE013599 AAM70833   AE013599 AGB93271   AE013599 AGB93272   AE013599 AGB93273   AI113551   AI456005   AI456509   AI513275   AI514790   AI515260   AI518216   AI532080   AI532090   AY119110 AAM50970   BE976985   BG637490   BG638778   BI162256   BI164030   BI164581   BI165626   BI167179   BI167480   BI167484   BI170549   BI173878   BI233213   BI234663   BI238403   BI238481   BI241541   BI242190   BI357632   BI364481   BI366442   BI370286   BI371229   BI371922   BI372962   BI484457   BI486578   BI565254   BI574406   BI574427   BI580427   BI581166   BI582036   BI584055   BI593070   BI605171   BI611418   BI611557   BI612155   BI614886   BI618582   BI622874   BI627862   BI629533   BI629728   BI637808   BI640004   BT122079   BT122181   CK135623   CL610143   CO157088   CO178305   CO193164   CO275931   CO282651   CO291531   CO295700   CO308993   CO328120   CO330582   CO341386   CZ475391   CZ475392   EC064574   EC075503   EC077764   EC197509   EC200996   EC210933   EC211759   EC229193   EC230210   EC239459   EC246479   EC249672   EC254730   EC255395   EC263107   ES690450   ES690457   ES690470   ES690472   ES690478   ES690479   ES690480   ES690488   ES690489   EV574945   EV575720   EV579555   FE527494   GH748747   GH749750   GH751803   GH753744   GH753775   GH754306   GH755339   GH756268   GH757230   GH758002   GH758457   GH758716   GH758788   GH759266   GH759646   GH760362   GH760616   GH761326   GH770435   GH770759   GH770978   GH771234   GH771959   GH772372   GH773279   GH775041   GH776484   GH777067   GH777955   GH778333   GH780191   GH780860   GH781036   GH781173   GH781446   GH781913   GH782281   GH785452   GH786340   GH788018   GH789758   GH790333   GH795162   GH795235   GH798496   GH798894   GH800192   GH802400   GH804646   GH804803   GH805614   GH806352   GH806480   GH806708   GH806841   GH807343   GH807940   GH808565   GH808964   GH809766   GH810652   GH812684   GH813986   GH814069   GH814738   GH814974   GH815113   GH815578   GH816228   GH816229   GH817518   GH818436   GH820281   GH820652   GH821068   GH821203   GH821453   GH822386   GH822525   GH822579   GH824155   GH824845   GH824859   GH825690   GH826778   GH826839   GH826938   GH827694   GH828397   GH828401   GH828446   GH828997   GH829375   GH829807   GH830999   GH831346   GH831436   GH832615   GH835295   GH837637   GH837642   GH837948   GH838505   GH839032   GH840595   GH843103   GH843122   GH843738   GH844077   GH844112   GH844831   GH844882   GH845664   GH848264   GH849925   GH855470   GH855608   GH856780   GH858604   GH858783   GH858830   GH858832   GH860930   GH861782   GH862401   GH862873   GH863751   GH863806   GH863829   GH864923   GH865638   GH865849   GH867395   GH868290   GH868409   GH868522   GH869897   GH870240   GH870277   GH871500   GH871783   GH871956   GH873542   GH873956   GH874746   GH874751   GH874861   GH875209   GH875440   GH877998   GH878552   GH878638   GH879749   GH880000   GH880681   GH881466   GH884240   GH884472   GH884859   GH887751   GH887829   GH890913   GH891008   GH891296   GH892278   GH893401   GH894067   GH894441   GH894699   GH894963   GH896649   GH897707   GH900758   GH901118   GH901743   GH901817   GH902374   GH902927   GH904979   GH905005   GH905123   GH905543   GH907008   GH907689   GH907930   GH910429   GH910622   GH911794   GH912800   GH913014   GH913323   GH913879   GH915344   GH915615   GH915918   GH917954   GH919345   GH920888   GH921080   GH921396   GH921909   GH922049   GH924681   GH932399   GH932837   GH936566   GH936938   GH937882   GH937895   GH940054   GH940133   GH940986   GH942439   GH942490   GH942574
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	A1Z6Q0 A1Z6Q1 Q8MS42
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) anterior endoderm anlage   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) Malpighian tubule primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic foregut   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
nuclear periphery inferred from direct assay (Dialynas et al., 2010) perinuclear region of cytoplasm inferred from direct assay (Kracklauer et al., 2007)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (42) central nervous system, larvae L3  (33) central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female  (71) ovary, mated 4-day female  (60) testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (42) central nervous system, larvae L3  (33) central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female  (71) ovary, mated 4-day female  (60) testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    42 central nervous system, larvae L3    33 central nervous system, pupae P8    20 head, virgin 1-day female    14 head, virgin 4-day female    16 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    16 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    25 head, mated 20-day male    23 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    13 digestive system, 1-day adult    9 digestive system, 4-day adult    14 digestive system, 20-day adult    11 fat body, larvae L3 wandering    5 fat body, white prepupae    12 fat body, pupae P8    20 carcass, larvae L3 wandering    19 carcass, 1-day adult    12 carcass, 4-day adult    15 carcass, 20-day adult    13 ovary, virgin 4-day female    71 ovary, mated 4-day female    60 testis, mated 4-day male    16 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (41) embryo 02-04hr  (50) embryo 04-06hr  (35) embryo 06-08hr  (37) embryo 08-10hr  (37) embryo 10-12hr  (40) embryo 12-14hr  (37) embryo 14-16hr  (27) embryo 16-18hr  (39) embryo 18-20hr  (73) embryo 20-22hr  (69) embryo 22-24hr  (79) larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day  (27) adult female 30day  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (41) embryo 02-04hr  (50) embryo 04-06hr  (35) embryo 06-08hr  (37) embryo 08-10hr  (37) embryo 10-12hr  (40) embryo 12-14hr  (37) embryo 14-16hr  27 embryo 16-18hr  (39) embryo 18-20hr  (73) embryo 20-22hr  (69) embryo 22-24hr  (79) larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day  27 adult female 30day  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    41 embryo 02-04hr    50 embryo 04-06hr    35 embryo 06-08hr    37 embryo 08-10hr    37 embryo 10-12hr    40 embryo 12-14hr    37 embryo 14-16hr    27 embryo 16-18hr    39 embryo 18-20hr    73 embryo 20-22hr    69 embryo 22-24hr    79 larva L1    22 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    8 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    12 white prepupae new    13 white prepupae 12hr    13 white prepupae 24hr    16 pupae 2d postWPP    16 pupae 3d postWPP    14 pupae 4d postWPP    14 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    14 adult female 05day    27 adult female 30day    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (98) Schneider line 2 Sg4  (48) embryonic 1182-4H  (84) embryonic GM2  (72) embryonic Kc167  (92) embryonic S1  (47) embryonic S3  (33) leg disc CME L1  (65) wing disc CME-W2  (55) wing disc ML-DmD8  (49) wing disc ML-DmD9  (52) wing disc ML-DmD16-c3  (53) wing disc ML-DmD21  (36) wing disc ML-DmD32  (69) haltere disc ML-DmD17-c3  (40) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (54) mixed discs ML-DmD4-c1  (53) CNS ML-DmBG1-c1  (56) CNS ML-DmBG2-c2  (53) tumorous blood cells mbn2  (54) ovary fGS/OSS  (57) ovary OSC  (47) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (98) Schneider line 2 Sg4  (48) embryonic 1182-4H  (84) embryonic GM2  (72) embryonic Kc167  (92) embryonic S1  (47) embryonic S3  (33) leg disc CME L1  (65) wing disc CME-W2  (55) wing disc ML-DmD8  (49) wing disc ML-DmD9  (52) wing disc ML-DmD16-c3  (53) wing disc ML-DmD21  (36) wing disc ML-DmD32  (69) haltere disc ML-DmD17-c3  (40) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (54) mixed discs ML-DmD4-c1  (53) CNS ML-DmBG1-c1  (56) CNS ML-DmBG2-c2  (53) tumorous blood cells mbn2  (54) ovary fGS/OSS  (57) ovary OSC  (47) ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    98 Schneider line 2 Sg4    48 embryonic 1182-4H    84 embryonic GM2    72 embryonic Kc167    92 embryonic S1    47 embryonic S3    33 leg disc CME L1    65 wing disc CME-W2    55 wing disc ML-DmD8    49 wing disc ML-DmD9    52 wing disc ML-DmD16-c3    53 wing disc ML-DmD21    36 wing disc ML-DmD32    69 haltere disc ML-DmD17-c3    40 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    54 mixed discs ML-DmD4-c1    53 CNS ML-DmBG1-c1    56 CNS ML-DmBG2-c2    53 tumorous blood cells mbn2    54 ovary fGS/OSS    57 ovary OSC    47 ovary OSS    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult  (56) Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult  (28) Ethanol 2.5% 3 hrs, larvae L3  (35) Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult  (56) Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult  28 Ethanol 2.5% 3 hrs, larvae L3  (35) Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (41) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    24 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    13 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    56 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    28 Ethanol 2.5% 3 hrs, larvae L3    35 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    41 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
External Data & Images
Linkouts	BDGP expression data • RE12054
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 koiGD1835 viable koiCB04483 koiEY03560 koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w Sterility Allele fertile koiEY03560 koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 koiGD1835 visible (with Df(2R)Exel6050) koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w visible | recessive koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w Phenotype manifest in Allele A1-7 dorsal acute muscle 1 | embryonic stage 16 koiHRKO84.w A1-7 dorsal acute muscle 2 | embryonic stage 16 koiHRKO84.w A1-7 dorsal oblique muscle 1 | embryonic stage 16 koiHRKO84.w A2-7 dorsal oblique muscle 2 | embryonic stage 16 koiHRKO84.w eye koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w koiEY03560 eye (with Df(2R)Exel6050) koiHRKO58.w koiHRKO79.w koiHRKO80.w koiHRKO84.w koiHRKO86.w nucleus & cone cell & eye disc (with Df(2R)Exel6050) koiHRKO80.w nucleus & eye photoreceptor cell & eye disc koiHRKO80.w nucleus & eye photoreceptor cell & eye disc (with Df(2R)Exel6050) koiHRKO80.w rhabdomere (with Df(2R)Exel6050) koiHRKO80.w trichogen cell, with Scer\GAL4pnr-MD237 koiGD1835
Classical Alleles ( 10 )
For All Classical Alleles Show
Allele of koi Class Mutagen Stocks Known lesion koiHRKO80.w amorphic allele - genetic evidence recombination SCEI endonuclease FLPase ends-out gene targeting 1 Yes koi09967 P-element activity 1 -- koid06841 P-element activity 1 -- koiEY03560 P-element activity 1 -- koiMI06834 1 -- koiCB04483 P-element activity 0 Yes koiHRKO58.w recombination SCEI endonuclease FLPase ends-out gene targeting 0 Yes koiHRKO79.w recombination SCEI endonuclease FLPase ends-out gene targeting 0 Yes koiHRKO84.w recombination SCEI endonuclease FLPase ends-out gene targeting 0 Yes koiHRKO86.w recombination SCEI endonuclease FLPase ends-out gene targeting 0 Yes
Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show
Allele of koi Class Mutagen Stocks Known lesion koiGD1835 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes koiScer\UAS.T:Avic\GFP in vitro construct - regulatory fusion in vitro construct - coding region fusion 2 Yes koiHMS02172 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes koiKK106748 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes koiGD9609 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes koiHRKO.Scer\SceI.RS in vitro construct 0 Yes koiScer\UAS.T:Hsap\MYC in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)CG3287-koi (Technau and Roth, 2008) Df(2R)Exel6050 (Ryder, 2004.4.26, Kracklauer et al., 2007)
Partially disrupted in	Df(2R)CG3287-koi (Technau and Roth, 2008)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9609} NA P{TRiP.HMS02172} NA P{UAS-koi.6Xmyc} NA P{UAS-koi.gfp} NA characterization construct P{FRT(w+.koiHRKO.Scer\SceI.RS)} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{PZ}koi09967 No insertion of mobile activating element P{EPgy2}koiEY03560 NA P{Mae-UAS.6.11}B0613B0613 NA P{XP}koid06841 NA miscellaneous insertions Mi{MIC}koiMI06834 NA P{PTT-GB}koiCB04483 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
nuclear migration inferred from mutant phenotype (Kracklauer et al., 2007)
Cellular Component
CV term Evidence References
nuclear periphery inferred from direct assay (Dialynas et al., 2010) perinuclear region of cytoplasm inferred from direct assay (Kracklauer et al., 2007)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nuclear inner membrane non-traceable author statement (Kracklauer et al., 2007)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions koi allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (48) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63R46H, EOG6Q5981 Dipteran inclusive ortholog search EOG6Q8561, EOG6QJRWG Insect inclusive ortholog search EOG6D7X23, EOG6WPZZB Arthropod inclusive ortholog search EOG65QFVZ Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG63R46H, EOG6Q5981)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\koi     Drosophila simulans   Dsim\GD10426 Y   Drosophila simulans   Dsim\GD10427 Y   Drosophila sechellia   Dsec\GM20900 Y   Drosophila sechellia   Dsec\GM20901 Y   Drosophila erecta   Dere\GG23225 Y   Drosophila erecta   Dere\GG23226 Y   Drosophila yakuba   Dyak\GE19077 Y   Drosophila yakuba   Dyak\GE19078 Y   Drosophila ananassae   Dana\GF11074 Y   Drosophila ananassae   Dana\GF11073 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17191 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15001 Y   Drosophila persimilis   Dper\GL11122 Y   Drosophila persimilis   Dper\GL11123 Y   Drosophila willistoni   Dwil\GK22144 Y   Drosophila willistoni   Dwil\GK22143 Y   Drosophila virilis   Dvir\GJ22183 Y   Drosophila virilis   Dvir\GJ22184 Y   Drosophila mojavensis   Dmoj\GI19305 Y   Drosophila mojavensis   Dmoj\GI19306 Y   Drosophila grimshawi   Dgri\GH21759 Y   Drosophila grimshawi   Dgri\GH21760 Y
Orthologs in non-Drosophila Dipterans (EOG6Q8561, EOG6QJRWG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007454   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007475   Anopheles gambiae Malaria mosquito  Agam\AGAP007310   Anopheles gambiae Malaria mosquito  Agam\AGAP007311   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ016364   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ016365
Orthologs in non-Dipteran Insects (EOG6D7X23, EOG6WPZZB)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB47112   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG037206   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27157   Atta cephalotes Leafcutter ant  Acep\ACEP14903   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12949   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL23001   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL23000   Linepithema humile Argentine ant  Lhum\LH12461   Pogonomyrmex barbatus Red harvester ant  Pbar\PB12089   Solenopsis invicta Red fire ant  Sinv\SINV11778   Acyrthosiphon pisum Pea aphid  Apim\ACYPI006847   Bombyx mori Silkmoth  Bmor\BGIBMGA005624   Bombyx mori Silkmoth  Bmor\BGIBMGA005625   Pediculus humanus Human body louse  Phum\PHUM235460   Pediculus humanus Human body louse  Phum\PHUM235450   Pediculus humanus Human body louse  Phum\PHUM418710   Tribolium castaneum Red flour beetle  Tcas\TC030748
Orthologs in non-Insect Arthropods (EOG65QFVZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_62314   Ixodes scapularis Deer tick  Isca\ISCW018754
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (22) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD10426 Drosophila simulans Dsim\GD10427 Drosophila sechellia Dsec\GM20900 Drosophila sechellia Dsec\GM20901 Drosophila erecta Dere\GG23225 Drosophila erecta Dere\GG23226 Drosophila yakuba Dyak\GE19077 Drosophila yakuba Dyak\GE19078 Drosophila ananassae Dana\GF11073 Drosophila ananassae Dana\GF11074 Drosophila pseudoobscura pseudoobscura Dpse\GA15001 Drosophila pseudoobscura pseudoobscura Dpse\GA17191 Drosophila persimilis Dper\GL11122 Drosophila persimilis Dper\GL11123 Drosophila willistoni Dwil\GK22143 Drosophila willistoni Dwil\GK22144 Drosophila virilis Dvir\GJ22183 Drosophila virilis Dvir\GJ22184 Drosophila mojavensis Dmoj\GI19305 Drosophila mojavensis Dmoj\GI19306 Drosophila grimshawi Dgri\GH21759 Drosophila grimshawi Dgri\GH21760
Stocks & Reagents
Stocks Listed in FlyBase ( 11 )
Bloomington	26265 P{UAS-koi.gfp}1, w* 26266 w*; P{UAS-koi.gfp}3 25105 w*; koiHRKO80.w 42188 y1 w*; Mi{MIC}koiMI06834 20000 y1 w67c23; P{EPgy2}koiEY03560 40924 y1 sc* v1; P{TRiP.HMS02172}attP40 11776 P{PZ}koi09967, ms(2)42D09967 cn1/CyO; ry506
Harvard	- P{XP}koid06841
VDRC	v108236 P{KK106748}VIE-260B v3990 w1118; P{GD1835}v3990 v3991 w1118; P{GD1835}v3991
Genomic Clones ( 2 )
	BACR04F03 BACR07J20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 310 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE12054
Other clones	RT06825 RT07126
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09887 GH13837 LD06205 LD09144 LD11166 LD11636 LD14675 LD20885 LD24821 LD31151 LD36551 LD37667 LD46478 LD47003 RE01623 RE03591 RE04281 RE05556 RE07508 RE07865 RE07879 RE17007 RE29506 RE30406 RE34840 RE34959 RE38636 RE39462 RE44158 RE49604 RE51977 RE56750 RE58077 RE58950 RE60163 RE67561 RE70026 RE74620 RH10961 RH17624 RH17888 RH19903 RH22815 RH23420 RH23453 RH40561 RH44377 RH49446 RH54908 RH58635 RH62978 RH69328 RH70711 SD03445 SD03457 SD15510 SD19894 SD22754
Other clones	45007 60616 62651 69947 77693 97350 157083 157405 192495 214375.45 214505.25 533792 bs58e11 CK01.14D.B8 CK01.70D.E8 CK01.144C.F6 Dmel_dig_006866_0662_2735 Dmel_dig_011637_0702_1304 Dmel_dig_016513_0591_2881 DMG3-chr2R.2667.pred.a EC35228 EK056352 EK119155 EK160915 EK197561 EK211356 EK259854 EK295629 EN09918 EP08614 EP12350 LD35815 RH18506 RH58416 RP003001593 RP003011890 RP003013682 RP003021711 RP003029466 RP003030126 RP003032799 RP003032918 RP003034596 RP003036688 RP003036925 RP003041066 RP003043912 RP003053919 RP003054689 RP003054916 RP003057506 RP003059554 RP003062039 RP003065184 RP003067745 RP003069086 RP003080331 RP003085053 RP003088893 RP003090688 RP003094367 RP003096178 RP003099298 RP003102158 RP003112735 RP003115377 RP003120024 RP003124726 RP003124917 RP003125182 RP003125217 RP003125872 RP003130795 RP003134914 RP003140511 RP003140614 RP003140905 RP003141235 RP003141961 RP003144261 RP003154236 RP003155899 RP003159524 RP003167669 RP003169737 RP003169743 RP003169794 RP003174668 RP003174702 RP003175965 RP003176119 RP003176854 RP003181467 RP003183554 RP003186533 RP003187317 RP003188929 RP003190941 RP003191720 RP003192839 RP003200029 RP003201654 RP003203006 RP003203121 RP003204305 RP003205075 RP003208320 RP003209092 RP003215790 RP003225721 RP003227644 RP003228119 RP003229535 RP003230743 RP003234585 RP003237040 RP003237675 RP003238216 RP003238298 RP003240263 RP003245224 RP003248324 RP003251469 RP003252894 RP003254016 RP003256427 RP003258971 RP003264816 RP003265208 RP003265954 RP003268149 RP003268881 RP003272872 RP003279108 RP003282545 RP003283024 RP003283152 RP003283845 RP003284006 RP003284575 RP003286414 RP003286495 RP003292215 RP003294654 RP003297176 RP003297953 RP003300856 RP003303538 RP003304937 RP003305243 RP003305794 RP003305949 RP003308068 RP003308281 RP003308342 RP003308430 RP003310473 RP003313461 RP003314309 RP003315845 RP003316534 RP003317345 RP003318533 RP003319760 RP003321054 RP003322933 RP003325917 RP003329231 RP003330075 RP003331038 RP003331483 RP003332114 RP003334723 RP003342225 RP003343976 RP003345256 RP003345591 RP003347464 RP003349171 RP003350428 RP003355228 RP003358613 RP003359475 RP003359858 RP003368839 RP003381062 RP003386203 RP003392811 RP003394355 RP003394755 RP003396875 RP003398807 RP003407160 RP003419837 RP003421937 RP003422841 RP003437479 RP003437690 RP003445502 RP003473565 RP003473826 RP003474272 RP003484135 RP003485572 RP003485884 RP003488522 RP003489209 RP003492402 RP003495723 RP003503968 RP003526677 RP003529914 RP003529961 RP003538996 RP003551474 RP003556167 RP003556977 RP003558559 RP003559387 RP003561321 RP003572367 RP003576838 RP003580832 RP003581632 RP003583221 RP003583956 RP003586850 RP003588316 RP003600623 RP003601298 RP003601707 RP003601931 RP003612224 RP003612561 RP003616853 RP003624102 RP003624804 RP003631239 RP003631940 RP003634612 RP003636201 RP003637276 RP003641042 RP003648679 RP003667766 RP003669644 RP003673092 RP003677297 RP003681010
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
	Named "klaroid" because of the striking similarities between the "klar" and "koi" mutant phenotypes. (Kracklauer et al., 2007)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: koi CG18584 (Kracklauer et al., 2007, Kracklauer et al., 2007)
Source for database merge of	Source for merge of: BEST:LD11166 CG3287 (Levis, 2001.9.10) Source for merge of: CG3287 koi (FlyBase Genome Annotators, 2012)
Additional comments	Annotations CG3287 and CG18584 merged as CG44154 in release 5.47 of the genome annotation. Merge supported by RNA-seq junction data and functional analysis described in FBrf0210478. (FlyBase Genome Annotators, 2012)
Other Comments
	koi is essential for the recruitment of both Msp-300 and klar to the nuclear envelope. (Technau and Roth, 2008) The koi protein is found in the inner nuclear membrane in all cells in the eye disc, and is retained there through interactions with the nuclear lamina protein Lam. (Kracklauer et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136396 NM_165491 NM_165492 NM_001273809 NM_001273810 NM_001273811 RefSeq (Proteins) • NP_610240 NP_724502 NP_724503 NP_001260738 NP_001260739 NP_001260740 DDBJ / EMBL / GenBank • AA392328 AAF57400 AAG22207 AAM50970 AAM70833 AGB93271 AGB93272 AGB93273 AY119110 BI170549 CL610143 CZ475391 CZ475392 Entrez Gene - A searchable database of RefSeq genes. • 35594 48441 UniProtKB/TrEMBL • A1Z6Q0 A1Z6Q1 Q8MS42
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Sad1/UNC-like, C-terminal (IPR012919) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE12054
Linkouts
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	BEST:LD11166 (Levis, 2001.9.10, Spradling et al., 1999, Giot et al., 2003, ) CG3287 (Buszczak et al., 2007, Grieder et al., 2007, Kallappagoudar et al., 2010, Hampoelz et al., 2011, Keleman et al., 2009.8.5, Technau and Roth, 2008, Cammarato et al., 2011) CG18584 (Kracklauer et al., 2007, Starr and Fischer, 2005, Kracklauer et al., 2007, Starr and Han, 2003) CG44154 (FlyBase Genome Annotators, 2012, Ni et al., 2010.12.1) koi (Kracklauer et al., 2007, Kracklauer, 2008.12.11, Technau and Roth, 2008, Elhanany-Tamir et al., 2012) n(2)09967 (Spradling, 1999.12.9)
Name Synonym	CG18584   Klaroid (Dialynas et al., 2012, Elhanany and Volk, 2008, Commisso and Boulianne, 2008, Dialynas et al., 2010) klaroid (Kracklauer et al., 2007, Kracklauer et al., 2007, Hampoelz et al., 2011, Technau and Roth, 2008, Elhanany-Tamir et al., 2012)
Secondary FlyBase IDs
	FBgn0028954 FBgn0033106 FBgn0033107
References ( 37 )
Generate a list of	All references relating to this gene ( 37 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 5 ) Review  ( 2 ) Personal communication to FlyBase  ( 12 ) Abstract  ( 3 ) FlyBase analysis  ( 2 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 3 )
	Dialynas et al., 2012, Hum. Mol. Genet. 21(7): 1544--1556 LMNA variants cause cytoplasmic distribution of nuclear pore proteins in Drosophila and human muscle. [FBrf0217713] Elhanany-Tamir et al., 2012, J. Cell Biol. 198(5): 833--846 Organelle positioning in muscles requires cooperation between two KASH proteins and microtubules. [FBrf0219334] Hampoelz et al., 2011, Development 138(16): 3377--3386 Microtubule-induced nuclear envelope fluctuations control chromatin dynamics in Drosophila embryos. [FBrf0214526] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...