Gene Dmel\fdy

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General Information

Symbol

Dmel\fdy

Species

D. melanogaster

Name

flagrante delicto Y

Annotation symbol

CG41503

Feature type

protein_coding_gene

FlyBase ID

FBgn0265047

Gene Model Status

Incomplete

Stock availability

None publicly available

Also Known As

FDY

Genomic Location

Chromosome (arm)

YHet

Recombination map

Y-

Cytogenetic map

Sequence location

YHet:305,269..307,006 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene flagrante delicto Y is referred to in FlyBase by the symbol Dmel\fdy (CG41503, FBgn0265047). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript and one annotated polypeptide. Protein features are: Hyaluronan/mRNA-binding protein. Gene sequence location is YHet:305269..307006.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Y-

(de Carvalho and Clark, 2003)

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\fdy for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Personal communication from Antonio Bernardo Carvalho suggests that this annotation corresponds to FDY and is functional.

Within a region on the Y chromosome that appears to have been originally derived from a contiguous region on 3R; the 3R region includes CG11844, CG10238, Clbn (CG11847), and CG11848.

Gene model is incomplete due to gap in genomic sequence.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

fdy-RB

FBtr0302230

NM_001170392

1113

350

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

fdy-PB

FBpp0291440

38.4

350

9.93

NP_001163863

EFA98714

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Hyaluronan/mRNA-binding protein (IPR006861)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

D2A6L8

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(80)
central nervous system, larvae L3		(46)
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		(30)
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		(45)
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		(99)
ovary, mated 4-day female		(105)
testis, mated 4-day male		(48)
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(80)
central nervous system, larvae L3		(46)
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		(45)
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		(99)
ovary, mated 4-day female		(105)
testis, mated 4-day male		(48)
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		80
central nervous system, larvae L3		46
central nervous system, pupae P8		11
head, virgin 1-day female		10
head, virgin 4-day female		12
head, virgin 20-day female		9
head, mated 1-day female		10
head, mated 4-day female		19
head, mated 20-day female		11
head, mated 1-day male		9
head, mated 4-day male		13
head, mated 20-day male		11
salivary gland, larvae L3 wandering		4
salivary gland, white prepupae		5
digestive system, larvae L3 wandering		16
digestive system, 1-day adult		19
digestive system, 4-day adult		30
digestive system, 20-day adult		22
fat body, larvae L3 wandering		6
fat body, white prepupae		14
fat body, pupae P8		18
carcass, larvae L3 wandering		45
carcass, 1-day adult		11
carcass, 4-day adult		20
carcass, 20-day adult		14
ovary, virgin 4-day female		99
ovary, mated 4-day female		105
testis, mated 4-day male		48
accessory gland, mated 4-day male		23
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(34)
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		(41)
adult female 30day		(54)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Very low Low Moderate Moderately high High

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(34)
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		(41)
adult female 30day		(54)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		34
embryo 02-04hr		9
embryo 04-06hr		9
embryo 06-08hr		11
embryo 08-10hr		15
embryo 10-12hr		20
embryo 12-14hr		11
embryo 14-16hr		9
embryo 16-18hr		6
embryo 18-20hr		6
embryo 20-22hr		15
embryo 22-24hr		5
larva L1		16
larva L2		17
larva L3 12hr old		20
larva L3 puffstage 1-2		6
larva L3 puffstage 3-6		12
larva L3 puffstage 7-9		6
white prepupae new		6
white prepupae 12hr		9
white prepupae 24hr		9
pupae 2d postWPP		4
pupae 3d postWPP		2
pupae 4d postWPP		5
adult male 01day		5
adult male 05day		14
adult male 30day		3
adult female 01day		15
adult female 05day		41
adult female 30day		54
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		171
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(27)
Schneider line 2 Sg4		(79)
embryonic 1182-4H		(52)
embryonic GM2		17
embryonic Kc167		22
embryonic S1		(53)
embryonic S3		(68)
leg disc CME L1		(79)
wing disc CME-W2		(45)
wing disc ML-DmD8		(71)
wing disc ML-DmD9		(56)
wing disc ML-DmD16-c3		(56)
wing disc ML-DmD21		(171)
wing disc ML-DmD32		(45)
haltere disc ML-DmD17-c3		(35)
eye-antennal disc ML-DmD11		(62)
antennal disc ML-DmD20-c5		(64)
mixed discs ML-DmD4-c1		(74)
CNS ML-DmBG1-c1		(105)
CNS ML-DmBG2-c2		(40)
tumorous blood cells mbn2		(38)
ovary fGS/OSS		(55)
ovary OSC		(35)
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		(171)
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		171
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		171
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		(79)
embryonic 1182-4H		(52)
embryonic GM2		17
embryonic Kc167		22
embryonic S1		(53)
embryonic S3		(68)
leg disc CME L1		(79)
wing disc CME-W2		(45)
wing disc ML-DmD8		(71)
wing disc ML-DmD9		(56)
wing disc ML-DmD16-c3		(56)
wing disc ML-DmD21		(171)
wing disc ML-DmD32		(45)
haltere disc ML-DmD17-c3		(35)
eye-antennal disc ML-DmD11		(62)
antennal disc ML-DmD20-c5		(64)
mixed discs ML-DmD4-c1		(74)
CNS ML-DmBG1-c1		(105)
CNS ML-DmBG2-c2		(40)
tumorous blood cells mbn2		(38)
ovary fGS/OSS		(55)
ovary OSC		(35)
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		(171)
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		27
Schneider line 2 Sg4		79
embryonic 1182-4H		52
embryonic GM2		17
embryonic Kc167		22
embryonic S1		53
embryonic S3		68
leg disc CME L1		79
wing disc CME-W2		45
wing disc ML-DmD8		71
wing disc ML-DmD9		56
wing disc ML-DmD16-c3		56
wing disc ML-DmD21		171
wing disc ML-DmD32		45
haltere disc ML-DmD17-c3		35
eye-antennal disc ML-DmD11		62
antennal disc ML-DmD20-c5		64
mixed discs ML-DmD4-c1		74
CNS ML-DmBG1-c1		105
CNS ML-DmBG2-c2		40
tumorous blood cells mbn2		38
ovary fGS/OSS		55
ovary OSC		35
ovary OSS		20
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Very low Low Moderate Moderately high High

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(53)
cold shock, 4-day adult		(35)
heat shock, 4-day adult		(66)
Cadmium 50 mM 6 hrs, larvae L3		(38)
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		(35)
Cadmium 100 mM 48 hrs, 4-day adult		(66)
Copper 0.5 mM 12 hrs, larvae L3		(46)
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		(32)
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		(87)
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		(31)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(52)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(34)
Paraquat 5 mM 48 hrs, 4-day adult		(50)
Paraquat 10 mM 48 hrs, 4-day adult		(69)
Rotenone 2 μg 12 hrs, larvae L3		(30)
Rotenone 8 μg 12 hrs, larvae L3		(44)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(53)
cold shock, 4-day adult		(35)
heat shock, 4-day adult		(66)
Cadmium 50 mM 6 hrs, larvae L3		(38)
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		(35)
Cadmium 100 mM 48 hrs, 4-day adult		(66)
Copper 0.5 mM 12 hrs, larvae L3		(46)
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		(87)
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(52)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(34)
Paraquat 5 mM 48 hrs, 4-day adult		(50)
Paraquat 10 mM 48 hrs, 4-day adult		(69)
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		(44)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		53
cold shock, 4-day adult		35
heat shock, 4-day adult		66
Cadmium 50 mM 6 hrs, larvae L3		38
Cadmium 50 mM 12 hrs, larvae L3		21
Cadmium 50 mM 48 hrs, 4-day adult		35
Cadmium 100 mM 48 hrs, 4-day adult		66
Copper 0.5 mM 12 hrs, larvae L3		46
Copper 15 mM 48 hrs, 4-day adult		6
Zinc 5 mM 12 hrs, larvae L3		32
Zinc 4.5 mM 48 hrs, 4-day adult		20
Ethanol 2.5% 3 hrs, larvae L3		87
Ethanol 5% 3 hrs, larvae L3		20
Ethanol 10% 3 hrs, larvae L3		31
Caffeine 1.5 mg/ml 4 hrs, larvae L3		13
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		52
Caffeine 25 mg/ml 48 hrs, 4-day adult		34
Paraquat 5 mM 48 hrs, 4-day adult		50
Paraquat 10 mM 48 hrs, 4-day adult		69
Rotenone 2 μg 12 hrs, larvae L3		30
Rotenone 8 μg 12 hrs, larvae L3		44
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of fdy	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of fdy	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

There is no information supporting a biological process, cellular component or molecular function term for this gene.

(Based on a review of available data on: 2012-10-23)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

gene

nuclear_gene

(FlyBase Genome Annotators, 2009)

protein_coding_gene

(FlyBase Genome Annotators, 2009)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

fdy allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (54) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6TQMW1

Dipteran inclusive ortholog search

EOG6SQX5G

Insect inclusive ortholog search

EOG6G79VN

Arthropod inclusive ortholog search

EOG6KWH93

Metazoa inclusive ortholog search

EOG6QP0QV

Orthologs in Drosophila Species (EOG6TQMW1)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\vig2

Drosophila melanogaster

fruit fly

Dmel\fdy

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila sechellia

Drosophila sechellia

Drosophila erecta

Drosophila erecta

Drosophila yakuba

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA11231

Drosophila persimilis

Dper\GL21903

Drosophila willistoni

Drosophila virilis

Drosophila virilis

Drosophila virilis

Drosophila mojavensis

Dmoj\GI23826

Drosophila mojavensis

Dmoj\GI21552

Drosophila mojavensis

Dmoj\GI17329

Drosophila grimshawi

Dgri\GH10817

Drosophila grimshawi

Dgri\GH18047

Orthologs in non-Drosophila Dipterans (EOG6SQX5G)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL008073

Anopheles gambiae

Malaria mosquito

Agam\AGAP013112

Orthologs in non-Dipteran Insects (EOG6G79VN)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\LOC409410

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG004798

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH11574

Atta cephalotes

Leafcutter ant

Acep\ACEP13150

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO17202

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL20471

Linepithema humile

Argentine ant

Lhum\LH25073

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB21597

Solenopsis invicta

Red fire ant

Sinv\SINV17716

Bombyx mori

Silkmoth

Bmor\BGIBMGA006704

Pediculus humanus

Human body louse

Phum\PHUM032630

Tribolium castaneum

Red flour beetle

Tcas\TC001877

Orthologs in non-Insect Arthropods (EOG6KWH93)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_304206

Ixodes scapularis

Deer tick

Isca\ISCW000538

Orthologs in non-Arthropod Metazoa (EOG6QP0QV)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\F56D12.5

Danio rerio

Zebrafish

Drer\serbp1

Danio rerio

Zebrafish

Drer\serbp1

Danio rerio

Zebrafish

Drer\wu:fc66f06

Danio rerio

Zebrafish

Drer\DKEY-30K6.2

Xenopus tropicalis

Western clawed frog

Xtro\serbp1

Xenopus tropicalis

Western clawed frog

Xtro\habp4

Gallus gallus

Domestic chicken

Ggal\SERBP1

Gallus gallus

Domestic chicken

Ggal\HABP4

Mus musculus

House mouse

Mmus\Serbp1

Mus musculus

House mouse

Mmus\Habp4

Rattus norvegicus

Norway rat

Rnor\Serbp1

Rattus norvegicus

Norway rat

Rnor\Habp4

Homo sapiens

Human

Hsap\SERBP1

Homo sapiens

Human

Hsap\ENSG00000130956

Human Orthologs (2)

Gene

OMIM

HGNC

Hsap\SERBP1

Hsap\ENSG00000130956

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 7 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

FI06040

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

AT01073

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: fdy CG41503

(FlyBase, 1992-)

Additional comments

Other Comments

Annotation CR41503 renamed CG41503 in release 5.21 of the genome annotation.

(FlyBase Genome Annotators, 2009)

New annotation (CR41503) in release 5.2 of the genome annotation.

(Drosophila Heterochromatin Genome Project, 2007)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_001170392

RefSeq (Proteins)

•

NP_001163863

DDBJ / EMBL / GenBank

•

EFA98714

Entrez Gene - A searchable database of RefSeq genes.

•

8674077

UniProtKB/TrEMBL

•

D2A6L8

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Hyaluronan/mRNA-binding protein (IPR006861)

Linkouts

Synonyms & Secondary IDs ( 5 )

Reported As

Symbol Synonym

CG41503

(FlyBase Genome Annotators, 2009)

CR41503

(Drosophila Heterochromatin Genome Project, 2007)

FDY

(de Carvalho and Clark, 2003, Carvalho et al., 2006, Koerich et al., 2007, Gvozdev et al., 2005, Koerich et al., 2008)

fdy

Name Synonym

flagrante delicto Y

(de Carvalho and Clark, 2003, Gvozdev et al., 2005, )

Secondary FlyBase IDs

FBan0041503
FBgn0064184
FBgn0085787

References ( 10 )

Research paper

Koerich et al., 2008, Nature 456(7224): 949--951: Low conservation of gene content in the Drosophila Y chromosome. [FBrf0206830]

Review

Gvozdev et al., 2005, BioEssays 27(12): 1256--1262: The Y chromosome as a target for acquired and amplified genetic material in evolution. [FBrf0189786]

Personal communication to FlyBase

Drosophila Heterochromatin Genome Project, 2007, Release 5.2 of the annotated Drosophila melanogaster heterochromatin.: Release 5.2 of the annotated Drosophila melanogaster heterochromatin. [FBrf0199188]

Abstract

Koerich et al., 2007, A. Dros. Res. Conf. 48: 667A: Evolution of the Y-chromosome: changes in gene content in 8 Drosophila species. [FBrf0199155]
Carvalho et al., 2006, A. Dros. Res. Conf. 47: 675B: Repeated acquisition of the kl-5 gene from an autosome by the Drosophila Y chromosome. [FBrf0189069]
de Carvalho and Clark, 2003, A. Dros. Res. Conf. 44: 318C: Birth of a new gene on the Drosophila Y chromosome. [FBrf0154622]

FlyBase analysis

FlyBase Curators, 2010-, Gene Ontology (GO) annotation review.: Gene Ontology (GO) annotation review. [FBrf0216433]
FlyBase Genome Annotators, 2009, Changes affecting gene model number or type in release 5.21 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.21 of the annotated D.melanogaster genome. [FBrf0208313]
FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase.: Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398]
FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]