FlyBase Gene Report: Dmel\Cdep

General Information

Symbol

Dmel\Cdep

Species

D. melanogaster

Name

Chondrocyte-derived ezrin-like domain containing protein

Annotation Symbol

CG44193

Feature Type

protein_coding_gene

FlyBase ID

FBgn0265082

Gene Model Status

Current

Stock Availability

17 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

Chondrocyte-derived ezrin-like domain containing protein ortholog

Key Links

Genomic Location

Cytogenetic map

82E2-82E3

Sequence location

3R:4,910,552..4,945,576 [+]

Recombination map

3-47.1

RefSeq locus

NT_033777 REGION:4910552..4945576

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (5 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

enables cytoskeletal protein binding

inferred from electronic annotation with InterPro:IPR000798

(InterPro Project Members, 2004-)

enables DNA binding

inferred from electronic annotation with InterPro:IPR025898

(InterPro Project Members, 2004-)

enables guanyl-nucleotide exchange factor activity

inferred from sequence or structural similarity with HGNC:16460

(Gene Ontology Curators, 2002-)

inferred from biological aspect of ancestor with PANTHER:PTN000975179

(GO Reference Genome Project, 2011-)

inferred from electronic annotation with InterPro:IPR000219

(InterPro Project Members, 2004-)

Biological Process (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in Rac protein signal transduction

inferred from sequence or structural similarity with HGNC:16460

(Gene Ontology Curators, 2002-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

located_in cytoskeleton

inferred from electronic annotation with InterPro:IPR000299

(InterPro Project Members, 2004-)

Gene Group (FlyBase)

RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

RHO GUANINE NUCLEOTIDE EXCHANGE FACTORS -: RhoGEFs are Guanine Nucleotide Exchange Factors (GEFs) for Rho family GTPases. They include Dbl-homology domain-containing proteins (the largest family of RhoGEFs) and CZH2 domain/Dock family GEFs. (Adapted from FBrf0190957).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Cdep for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry A8JQT5)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.48

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Cdep-RC

FBtr0336810

NM_141248

2537

404

Cdep-RE

FBtr0336809

NM_001043211

5038

1167

Cdep-RF

FBtr0336811

NM_169022

5026

1163

Cdep-RG

FBtr0336812

NM_001104215

15976

4273

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Cdep-PC

FBpp0307779

45.9

404

9.67

FBpp0307778

132.1

1167

8.54

FBpp0307780

131.6

1163

8.48

FBpp0307781

473.5

4273

6.18

A8JQT5

NP_001097685

ABW08601

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cdep using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Cdep_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.95

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 7 -- 8

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

anterior midgut primordium

(Fisher et al., 2012)

dorsal pharyngeal muscle primordium

(Fisher et al., 2012)

longitudinal trunk visceral muscle primordium

(Fisher et al., 2012)

organism | faint | ubiquitous

(Fisher et al., 2012)

posterior midgut primordium

(Fisher et al., 2012)

trunk mesoderm

(Fisher et al., 2012)

trunk visceral muscle primordium

(Fisher et al., 2012)

embryonic stage 13 -- 16

dorsal pharyngeal muscle cell

(Fisher et al., 2012)

embryonic/larval midgut

(Fisher et al., 2012)

larval muscle system

(Fisher et al., 2012)

larval visceral muscle cell

(Fisher et al., 2012)

longitudinal visceral muscle fiber

(Fisher et al., 2012)

prepupal stage P3

tendon cell

(Greenberg and Hatini, 2011)

Additional Descriptive Data

Expression is restricted to internal tendon precursor cells in stage P3 pupal leg discs.

(Greenberg and Hatini, 2011)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 5 of adulthood & male -- day 7 of adulthood & male

spermatozoon

(Wasbrough et al., 2010)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Cdep in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Cdep

View exonic expression by tissue for Dmel\Cdep

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0265082

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

40608/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0265082

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0051536

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0265082

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG31536

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 16 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Cdep

Transgenic constructs containing regulatory region of Cdep

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 9 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal | recessive

Cdep^{MI12769-FF.GT-mCh}

viable

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Cdep^GD8694

viable, with Scer\GAL4^pnr-MD237

Cdep^GD8694

viable, with Scer\GAL4^tin.CΔ4

Cdep^GD8694

Sterility

Allele

fertile

Cdep^Δ

Other Phenotypes

Allele

abnormal locomotor behavior | adult stage, with Scer\GAL4^Mef2.PR

Cdep^GD8694

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (54)

Hsap\FARP2

5 of 14

Yes

Hsap\FARP1

4 of 14

Yes

Hsap\FRMD7

4 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (37)

Rnor\Farp2

5 of 14

Yes

Rnor\Farp1

4 of 14

Yes

Rnor\Frmd7

4 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Rnor\Rdx

1 of 14

Rnor\Trio

1 of 14

Rnor\Vav1

1 of 14

Mus musculus (laboratory mouse) (33)

Mmus\Farp2

5 of 14

Yes

Mmus\Farp1

4 of 14

Yes

Mmus\Frmd7

4 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (19)

Xtro\farp1

4 of 13

Yes

Xtro\frmd7

3 of 13

Yes

Xtro\farp2

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\frmd4b

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (39)

Drer\farp2

5 of 14

Yes

Drer\farp1

4 of 14

Yes

Drer\frmd7

2 of 14

Yes

Drer\LOC557811

2 of 14

Yes

Drer\LOC101883674

2 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Drer\si:dkey-178k16.1

1 of 14

Drer\triob

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (16)

Cele\frm-3

4 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (17)

Agam\AgaP_AGAP001287

10 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (0)

Saccharomyces cerevisiae (Brewer's yeast) (0)

Schizosaccharomyces pombe (Fission yeast) (0)

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Cdep. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (14)

1 of 13

1 of 13

1 of 13

1 of 13

Mer

1 of 13

Moe

1 of 13

pbl

1 of 13

Pez

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

yrt

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

FRMD7; FERM domain containing 7

model of congenital nystagmus 1

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

FARP2; FERM, ARH/RhoGEF and pleckstrin domain protein 2

5 of 14

617586

FARP1; FERM, ARH/RhoGEF and pleckstrin domain protein 1

4 of 14

602654

FRMD7; FERM domain containing 7

4 of 14

300628

NYSTAGMUS 1, CONGENITAL, X-LINKED; NYS1

congenital nystagmus 1

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Show neighbor-neighbor interactions:

Off

Show/hide secondary interactors
(data from AllianceMine provided by esyN)

Select Layout:

Force Directed

Circle

Concentric

Legend:

Protein

RNA

Selected Interactor(s)

Other Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Cdep - Drep2

anti tag coimmunoprecipitation, peptide massfingerprinting

(Andlauer et al., 2014)

Cdep - nerfin-1

experimental knowledge based

(Guruharsha et al., 2011)

Cdep - stumps

two hybrid

(Battersby et al., 2003)

Summary of Genetic Interactions

esyN Network Diagram

Other Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0265082

MIST (protein-protein) - An integrated Molecular Interaction Database

40608

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

nuclear_gene

protein_coding_gene

(FlyBase Genome Annotators, 2007)

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-47.1

Cytogenetic map

82E2-82E3

Sequence location

3R:4,910,552..4,945,576 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

82E2-82E3

Limits computationally determined from genome sequence between P{PZ}l(3)02733⁰²⁷³³ and P{EP}EP974

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-47.1

(FlyBase, 2016)

3-44.1

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (17)

Aberrations including deletions of this gene Aberrations including duplications of this gene

605959

99492

99493

31168

y¹ v¹; P{TRiP.JF01661}attP2

42438

y¹ w^*; Mi{MIC}Cdep^MI06830

58668

y¹ w^*; Mi{MIC}Cdep^MI12769

61789

y¹ w^*; Mi{PT-GFSTF.1}Cdep^{MI06830-GFSTF.1}

1283R-1

1283R-2

2008R-2

v104438

v109953

More stocks available...

Genomic Clones (28)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (94)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0265082

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

New annotation (CG34306) in release 5.2 of the genome annotation.

(FlyBase Genome Annotators, 2007)

Cdep is a candidate protein interactor of Moe.

(Finn and Fehon, 2004)

dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R⁺ cell morphology.

(Kiger et al., 2003)

Relationship to Other Genes

Source for database merge of

Source for merge of: CG31536 BcDNA:AT26639

(FlyBase, 1996-)

Source for merge of: CG31536 BcDNA:RH50880

(FlyBase, 1996-)

Source for merge of: CG1283 CG2008

(FlyBase Genome Annotators, 2002-2003)

Source for merge of: Cdep CG34306

(FlyBase Genome Annotators, 2012)

Additional comments

l(3)j4B9 may correspond to Cdep: the P{lacW}l(3)j4B9^j4B9 insertion maps within the transcription unit.

(Gene Disruption Project members, 2015.10.8)

Annotations CG31536 and CG34306 merged as CG44193 in release 5.48 of the genome annotation.

(FlyBase Genome Annotators, 2012)

Merge supported by RNA-seq junction data.

(FlyBase Genome Annotators, 2012)

Annotations CG1283 and CG2008 merged as CG31536 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Source for merge of CG31536 BcDNA:AT26639 was a shared cDNA ( date:030728 ).

(FlyBase, 1996-)

Source for merge of CG31536 BcDNA:RH50880 was a shared cDNA ( date:030728 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Source for identity of: Cdep CG31536

(Finn, 2004.2.23)

Nomenclature comments

Etymology

Named "Cdep" after the human ortholog.

(FlyBase, 2009-)

Synonyms and Secondary IDs (13)

Reported As

Symbol Synonym

BcDNA:AT26639

BcDNA:RH50880

CDEP

(Andlauer et al., 2014, Finn and Fehon, 2004)

CG1283

(Hoover and Bryant, 2002, Goldstein and Gunawardena, 2000)

CG2008

(Inlow and Restifo, 2004)

CG31536

(Rosa-Ferreira et al., 2015, Greenberg and Hatini, 2011, Keleman et al., 2009.8.5, Ni et al., 2008, Malko et al., 2006, Csiszar and Leptin, 2003)

CG34306

(Kwon et al., 2013, Wasbrough et al., 2010, Keleman et al., 2009.8.5, FlyBase Genome Annotators, 2007)

CG44193

(Andlauer et al., 2014, FlyBase Genome Annotators, 2012)

cdep

(Nakamura et al., 2017)

i23

(Battersby et al., 2003)

Name Synonyms

Chondrocyte-derived ezrin-like domain containing protein

Chondrocyte-derived ezrin-like domain containing protein ortholog

(Andlauer et al., 2014)

Secondary FlyBase IDs

FBgn0051536
FBgn0037286
FBgn0037287
FBgn0062431
FBgn0063301
FBgn0085335

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 73 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

40608

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

A8JQT5

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

A8JQT5

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0265082

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

40608/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0265082

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0265082

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG44193

MARRVEL_MODEL - MARRVEL (model organism gene)

40608

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0265082

DroID - A comprehensive database of gene and protein interactions.

FBgn0265082

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Cdep_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0051536

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0265082

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG31536

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0265082

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

MIST (protein-protein) - An integrated Molecular Interaction Database

40608

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (76)

The following external sites may use different assemblies or annotations than FlyBase.

-0.95

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