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Gene Dmel\CG44247

General Information
Symbol	Dmel\CG44247	Species	D. melanogaster
Name		Annotation symbol	CG44247
Feature type	protein_coding_gene	FlyBase ID	FBgn0265182
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	60E4-60E5	Sequence location	2R:20,764,214..20,768,744 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG44247 (FBgn0265182). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Gene sequence location is 2R:20764214..20768744.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 60E4-60E5
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG44247 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.40 Gene model reviewed during 5.45 Low-frequency RNA-Seq exon junction(s) not annotated. Gene model reviewed during 5.49
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG44247-RA FBtr0339097     2696   536 CG44247-RB FBtr0339098     3629   536
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG44247-PA   FBpp0308242   58.3   536   4.86       CG44247-PB   FBpp0308243   58.3   536   4.86
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA699048   AI110188   AI134309   AI238176   AY058645   AY060248   BI161927   BI163131   BI605411   BI612839   BT100206   CO177699   CO264910   CO266545   CO291562   CO297992   CO300449   CO314585   CO315096   CO315874   CO316315   CO317464   CO331168   EC061732   EC085346   EC089380   EC090440   EC201014   EC205377   EC210440   EC221328   EC222865   EC227003   EC236330   EC237442   EC241528   EC248815   EC249758   EC250247   EC259972   EV594341
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
[an error occurred while processing this directive] FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
[an error occurred while processing this directive]
modENCODE Development RNA-Seq
[an error occurred while processing this directive] modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
[an error occurred while processing this directive]
modENCODE Treatments RNA-Seq
[an error occurred while processing this directive]
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG44247GD2218 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG44247 Class Mutagen Stocks Known lesion CG44247MI05525 1 -- CG44247NP0049 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG44247 Class Mutagen Stocks Known lesion CG44247GD2218 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG44247KK107690 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG44247NIG.3749R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG44247MI05525 NA insertion of enhancer trap binary system P{GawB}CG44247NP0049 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2012-10-25)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene (FlyBase Genome Annotators, 2012) protein_coding_gene (FlyBase Genome Annotators, 2012)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG44247 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (94) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups - Dmel gene model changed subsequent to version 5.45
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG61VKNZ, EOG6SBFHR Dipteran inclusive ortholog search EOG615GP3, EOG6SBF6D Insect inclusive ortholog search EOG6G4FM0, EOG6GMSSG Arthropod inclusive ortholog search EOG6VQ84W, EOG61JWTM Metazoa inclusive ortholog search EOG6DZDNZ, EOG6TFCCT
Orthologs in Drosophila Species (EOG61VKNZ, EOG6SBFHR)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Atf-2     Drosophila melanogaster fruit fly  Dmel\CG44247     Drosophila melanogaster fruit fly  Dmel\veg     Drosophila simulans   Dsim\GD11905   Y Drosophila simulans   Dsim\GD11235   Y Drosophila sechellia   Dsec\GM11686   Y Drosophila sechellia   Dsec\GM11907   Y Drosophila sechellia   Dsec\GM21742   Y Drosophila erecta   Dere\GG23012   Y Drosophila erecta   Dere\GG20647   Y Drosophila yakuba   Dyak\GE14449   Y Drosophila yakuba   Dyak\GE11632   Y Drosophila ananassae   Dana\GF13345   Y Drosophila ananassae   Dana\GF19771   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA24876   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA19757   Y Drosophila persimilis   Dper\GL17691   Y Drosophila persimilis   Dper\GL11574   Y Drosophila willistoni   Dwil\GK21677   Y Drosophila willistoni   Dwil\GK22036   Y Drosophila virilis   Dvir\GJ21281   Y Drosophila virilis   Dvir\GJ21525   Y Drosophila mojavensis   Dmoj\GI20037   Y Drosophila mojavensis   Dmoj\GI18441   Y Drosophila grimshawi   Dgri\GH20364   Y Drosophila grimshawi   Dgri\GH22950   Y
Orthologs in non-Drosophila Dipterans (EOG615GP3, EOG6SBF6D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013261 Y Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008042 Y Anopheles gambiae Malaria mosquito  Agam\AGAP008416 Y Anopheles gambiae Malaria mosquito  Agam\AGAP001339 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004851 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ007789 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ017887 Y
Orthologs in non-Dipteran Insects (EOG6G4FM0, EOG6GMSSG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC100576527 Y Apis mellifera Western honey bee  Amel\GB42923 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG021820 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG009893 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27021 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21209 Y Atta cephalotes Leafcutter ant  Acep\ACEP21424 Y Atta cephalotes Leafcutter ant  Acep\ACEP18490 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO13656 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12100 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15646 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12204 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL11081 Y Linepithema humile Argentine ant  Lhum\LH22994 Y Linepithema humile Argentine ant  Lhum\LH19974 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB26722 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18628 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12176 Y Solenopsis invicta Red fire ant  Sinv\SINV25872 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI49996 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI008003 Y Bombyx mori Silkmoth  Bmor\BGIBMGA001375 Y Pediculus humanus Human body louse  Phum\PHUM600910 Y Pediculus humanus Human body louse  Phum\PHUM399360 Y Tribolium castaneum Red flour beetle  Tcas\TC009483 Y Tribolium castaneum Red flour beetle  Tcas\Gr85 Y
Orthologs in non-Insect Arthropods (EOG6VQ84W, EOG61JWTM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\ELOVL2 Y Daphnia pulex Water flea  Dpux\JGI_V11_324326 Y Ixodes scapularis Deer tick  Isca\ISCW002262 Y Ixodes scapularis Deer tick  Isca\ISCW020204 Y
Orthologs in non-Arthropod Metazoa (EOG6DZDNZ, EOG6TFCCT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\T09B4.1 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026905gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014323gn Y Danio rerio Zebrafish  Drer\ENSDARG00000023903 Y Danio rerio Zebrafish  Drer\ENSDARG00000086785 Y Danio rerio Zebrafish  Drer\atf7a Y Danio rerio Zebrafish  Drer\si:ch73-362g18.2 Y Danio rerio Zebrafish  Drer\atf7b Y Danio rerio Zebrafish  Drer\ENSDARG00000069807 Y Xenopus tropicalis Western clawed frog  Xtro\atf7 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000031365 Y Xenopus tropicalis Western clawed frog  Xtro\atf2 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000012041 Y Xenopus tropicalis Western clawed frog  Xtro\pigv Y Gallus gallus Domestic chicken  Ggal\ATF2 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000003038 Y Gallus gallus Domestic chicken  Ggal\CREB5 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000000324 Y Mus musculus House mouse  Mmus\Atf2 Y Mus musculus House mouse  Mmus\9430076C15Rik Y Mus musculus House mouse  Mmus\Atf7 Y Mus musculus House mouse  Mmus\ENSMUSG00000053007 Y Mus musculus House mouse  Mmus\Pigv Y Rattus norvegicus Norway rat  Rnor\Atf2 Y Rattus norvegicus Norway rat  Rnor\RGD1566107_predicted Y Rattus norvegicus Norway rat  Rnor\Atf7 Y Rattus norvegicus Norway rat  Rnor\Pigv Y Homo sapiens Human  Hsap\ENSG00000146592 Y Homo sapiens Human  Hsap\ATF7 Y Homo sapiens Human  Hsap\ATF2 Y Homo sapiens Human  Hsap\ENSG00000060642 Y
Human Orthologs (4)
Gene OMIM HGNC Hsap\ENSG00000146592     Hsap\ATF7     Hsap\ATF2     Hsap\ENSG00000060642
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	40784 y1 w*; Mi{MIC}CG44247MI05525/SM6a
Kyoto	103506 y* w*; P{GawB}CG44247NP0049 / CyO, P{UAS-lacZ.UW14}UW14
VDRC	v105478 P{KK107690}VIE-260B v7413 w1118; P{GD2218}v7413 v7414 w1118; P{GD2218}v7414
Genomic Clones ( 1 )
	BACR08I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 42 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH07217 LD34489 LP09747
Other clones	DPiM_LD34489
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09706 GH11735 GH14177 HL07363 RE01386 RE02458 RH41823 RH71009
Other clones	30839 35967 38624 53321 53957 70222 82272 118041 119346 159932 160909 163651 173987 194515 214505.66 281560 CK01.66D.G8 Dmel_neb_014217_0683_3211 EK054060 EK140863 EK146814 EK171057 EK178223 EK197638 EK237063 EK239036 EK262912 EK264462 EK268254 EK298747
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG12850 CG3749 (FlyBase Genome Annotators, 2002-2003)
Additional comments	Annotation CG30420 split into CG44246 (which corresponds to Atf-2) and CG44247 in release 5.49 of the genome annotation. (FlyBase Genome Annotators, 2012) Split based in part on on data from FBrf0188065. (FlyBase Genome Annotators, 2012) Annotations CG12850 and CG3749 merged as CG30420 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
Other Crossreferences
Linkouts
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG3749   CG30420 (Keleman et al., 2009.8.5) CG44247 (FlyBase Genome Annotators, 2012)
Name Synonym
Secondary FlyBase IDs
	FBgn0015562 FBgn0035074 FBgn0050420
References ( 10 )
Supplementary material	Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Bellen, 2012.7.12, set994.xml set994.xml [FBrf0218954] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase Genome Annotators, 2012, Changes affecting gene model number or type in release 5.49 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.49 of the annotated D.melanogaster genome. [FBrf0219499] FlyBase Curators, 2010-, Gene Ontology (GO) annotation review. Gene Ontology (GO) annotation review. [FBrf0216433] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]