A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Vha68-1

General Information
SymbolDmel\Vha68-1SpeciesD. melanogaster
NameVacuolar H+ ATPase 68kD subunit 1Annotation symbolCG12403
Feature typeprotein_coding_geneFlyBase IDFBgn0265262
Gene Model StatusCurrent Stock availability 8 publicly available
Also Known AsVha68, Vha
Genomic Location
Chromosome (arm)2LRecombination map2-
Cytogenetic map34B-34A4Sequence location2L:13,000,770..13,004,107 [-]

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Automatically generated summary

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The gene Vacuolar H+ ATPase 68kD subunit 1 is referred to in FlyBase by the symbol Dmel\Vha68-1 (CG12403, FBgn0265262). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: ATP binding; proton-transporting ATPase activity, rotational mechanism. There is experimental evidence that it is involved in the biological process: cellular response to hypoxia. 16 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: ATPase, F1 complex beta subunit/V1 complex, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, V1 complex, subunit A; ATPase, alpha/beta subunit, N-terminal; ATPase, alpha/beta subunit, nucleotide-binding domain, active site; V-type ATP synthase catalytic subunit A/alpha. Gene sequence location is 2L:13000770..13004107.

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Description
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FB2013_03
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
34B-34A4  
Limits computationally determined from genome sequence between P{lacW}l(2)k07015k07015&P{PZ}l(2)rK639rK639 and P{lacW}l(2)k11328k11328&P{lacW}l(2)k10105k10105  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
34B-34B  
34B-34B  
 
34B-34B  
34B1-34B12  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\Vha68-1 for information on other features GBrowse View Help
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detailed view FBtr0080430 FBtr0080429 FBtr0336618 FBtr0336615 FBtr0080422 FBpp0080011 FBpp0307601 FBpp0080010 FBpp0080003 FBpp0307598 FBti0051681 FBti0043656 FBti0067243 FBti0100946 FBti0048055 FBti0039121 FBti0006333 FBti0028508 FBti0026363 FBti0106898 FBti0011063 FBti0049537 FBti0101742
Comments on Gene Model
Gene model reviewed during 5.48
Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Low-frequency RNA-Seq exon junction(s) not annotated.
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0080429
  2610
  614
FBtr0336618
  2482
  614
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0080010  
68.4  
614  
4.93  
FBpp0307601  
68.4  
614  
4.93  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Type
Symbol & Location
Additional Notes
References
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in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
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mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
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Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
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FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
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modENCODE Temporal Expression Data (Graveley et al., 2011)
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A cluster of genes with similar mRNA expression dynamics across development.
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Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 12 )
For All Classical Alleles Show

Allele of Vha68-1ClassMutagenStocksKnown lesion
Vha68-1EY029232 --
Vha68-1e030361 --
Vha68-1DG12709
0 --
Vha68-1In-L120 Yes
Vha68-1In-L310 Yes
Vha68-1In-L350 Yes
Vha68-1St-L1060 Yes
Vha68-1St-L1240 Yes
Vha68-1St-L130 Yes
Vha68-1St-L330 Yes
Vha68-1St-L370 Yes
Vha68-1St-L50 Yes
hide Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Vha68-1ClassMutagenStocksKnown lesion
Vha68-1GD169382 Yes
Vha68-1GD77171 Yes
Vha68-1HMS025811 Yes
Vha68-1KK1060191 Yes
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Disrupted in
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Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
hide Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from sequence or structural similarity with Saccharomyces TFP1
inferred from sequence or structural similarity with UniProtKB:P38607
non-traceable author statement
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Interacts with
Please look at the allele data for full details of the genetic interactions
Vha68-1 allele
Gene
References
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hide Orthologs
hide OrthoDB Orthologs (37) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6NZVCT)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
 
 
Drosophila sechellia
 
 
 
Drosophila erecta
 
 
 
Drosophila yakuba
 
 
 
Drosophila ananassae
 
 
 
Drosophila pseudoobscura pseudoobscura
 
 
 
Drosophila persimilis
 
 
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
 
 
Drosophila grimshawi
 
Y
 
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
hideOrthologs in non-Dipteran Insects (EOG6K3JRB)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\LOC551093
Y
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG001459
Y
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\atpA
Y
Atta cephalotes
Leafcutter ant 
Acep\atpA
Y
Camponotus floridanus
Florida carpenter ant 
Cflo\atpA
Y
Harpegnathos saltator
Jerdons jumping ant 
Hsal\atpA
Y
Linepithema humile
Argentine ant 
Lhum\LH22479
Y
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB20547
Y
Solenopsis invicta
Red fire ant 
Sinv\SINV10715
Y
Acyrthosiphon pisum
Pea aphid 
Y
Bombyx mori
Silkmoth 
Y
Pediculus humanus
Human body louse 
Y
Tribolium castaneum
Red flour beetle 
Y
hideOrthologs in non-Insect Arthropods (EOG6CRJF3)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
Y
Ixodes scapularis
Deer tick 
Y
hideOrthologs in non-Arthropod Metazoa (EOG6FFRTT)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
Y
Strongylocentrotus purpuratus
Purple sea urchin 
Y
Danio rerio
Zebrafish 
Y
Danio rerio
Zebrafish 
Y
Xenopus tropicalis
Western clawed frog 
Y
Xenopus tropicalis
Western clawed frog 
Y
Gallus gallus
Domestic chicken 
Y
Mus musculus
House mouse 
Y
Rattus norvegicus
Norway rat 
Y
Homo sapiens
Human 
Y
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (3) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila willistoni
Drosophila virilis
Drosophila grimshawi
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hide Stocks Listed in FlyBase ( 8 )
Bloomington
Harvard
Kyoto
VDRC
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Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
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Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Source for database identity of
Source for database merge of
Source for merge of: Vha68-1 Vha68
Additional comments
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dsRNA made from templates generated with primers directed against Vha68-1 that is transfected into S2 treated with Listeria monocytogenes reveals Vha68-1 to be involved in Listeria monocytogenes entry and vacuolar escape.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
hide Synonyms & Secondary IDs ( 16 )
Reported As
Symbol Synonym
A subunit
vha67-1
VhaA
 
Name Synonym
vacuolar ATPase subunit A
Vacuolar H+-ATPase 68
Vacuolar H+-ATPase 68kD A subunit
 
Vacuolar H+ ATPase 68kD subunit 1
 
Vacuolar H+-ATPase A subunit
 
Vacuolar H+ ATPase subunit 68-1
 
Secondary FlyBase IDs
  • FBgn0013354
  • FBgn0013355
  • FBgn0020368
hide References ( 51 )
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hide Recent research papers ( 2 )
Djuranovic et al., 2012, Science 336(6078): 237--240
miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. [FBrf0218066]
Adamson et al., 2011, Genetics 189(2): 495--506
A Drosophila model for genetic analysis of influenza viral/host interactions. [FBrf0216397]
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All reviews listed in FlyBase were published before 2011