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Gene Dmel\l(3)neo38

General Information
Symbol	Dmel\l(3)neo38	Species	D. melanogaster
Name	lethal (3) neo38	Annotation symbol	CG6930
Feature type	protein_coding_gene	FlyBase ID	FBgn0265276
Gene Model Status	Current	Stock availability	22 publicly available
Also Known As	CG14725
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	86E18-86E18	Sequence location	3R:7,590,760..7,604,850 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene lethal (3) neo38 is referred to in FlyBase by the symbol Dmel\l(3)neo38 (CG6930, FBgn0265276). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding; nucleic acid binding. There is experimental evidence that it is involved in the biological process: regulation of chromatin silencing; imaginal disc-derived wing morphogenesis. 28 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 10 annotated transcripts and 10 annotated polypeptides. Protein features are: Zinc finger C2H2-type/integrase DNA-binding domain; Zinc finger, C2H2; Zinc finger, C2H2-like. Gene sequence location is 3R:7590760..7604850.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 86E18-86E18   Limits computationally determined from genome sequence between P{EP}Lk6EP886 and P{PZ}svp07842
Experimentally Determined Cytological Location
Cytogenetic map Notes References 86F1-86F11   (determined by in situ hybridisation)   (Spradling et al., 1999) 86F1-86F11     (BDGP Project Members, 1994-1999) 86F-86F   (determined by in situ hybridisation)   (Cooley et al., 1988)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\l(3)neo38 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.44 Gene model reviewed during 5.49 Stop-codon suppression (UGA) postulated; FBrf0216884. gene_with_stop_codon_read_through ; SO:0000697 Gene merge based on EST/cDNA data
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) l(3)neo38-RA FBtr0082533  NM_141856   1522   380 l(3)neo38-RB FBtr0110876  NM_001043243   6236   447 l(3)neo38-RC FBtr0110877  NM_001043244   2247   447 l(3)neo38-RD FBtr0305186  NM_001260136   4963   434 l(3)neo38-RF FBtr0307082  NM_001260130   1417   373 l(3)neo38-RG FBtr0307083  NM_001260131   3815   360 l(3)neo38-RI FBtr0307085  NM_001260133   1414   373 l(3)neo38-RJ FBtr0307086  NM_001260134   3691   360 l(3)neo38-RK FBtr0307087  NM_001260135   1611   447 l(3)neo38-RL FBtr0330170  NM_001275556   2247   455
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein l(3)neo38-PA   FBpp0082007   40.4   380   10.08     NP_650113   AAF54696 l(3)neo38-PB   FBpp0110176   47.1   447   10.03     NP_001036708   AAN13528 l(3)neo38-PC   FBpp0110177   47.1   447   10.03     NP_001036709   ABI31165 l(3)neo38-PD   FBpp0293716   45.5   434   10.06     NP_001247065   AFH06383 l(3)neo38-PF   FBpp0297925   39.6   373   10.08     NP_001247059   AFH06377 l(3)neo38-PG   FBpp0297926   38.1   360   10.10     NP_001247060   AFH06378 l(3)neo38-PI   FBpp0297928   39.6   373   10.08     NP_001247062   AFH06380 l(3)neo38-PJ   FBpp0297929   38.1   360   10.10     NP_001247063   AFH06381 l(3)neo38-PK   FBpp0297930   47.1   447   10.03     NP_001247064   AFH06382 l(3)neo38-PL   FBpp0303203   48.1   455   9.99     NP_001262485   AGB95867
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087) Zinc finger, C2H2-like (IPR015880)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141458   AA433263   AA433276   AA694871   AE014297 AAF54696   AE014297 AAN13528   AE014297 ABI31165   AF005863   AE014297 AFH06377   AE014297 AFH06378   AE014297 AFH06380   AE014297 AFH06381   AE014297 AFH06382   AE014297 AFH06383   AI109744   AI135433   AI390033   AQ034103   AY070621 AAL48092   AY119215 AAM51075   BI142014   BI163270   BI358243   BI364196   BI365781   BI370919   BI372974   BI577576   BI578793   BI579999   BI580872   BP556545   BP556546   BT006018   BT125573   BT125681   CK132041   CO177487   CO178015   CO187242   CO189490   CO262696   CO262916   CO264162   CO267947   CO273729   CO279510   CO279859   CO279990   CO286863   CO287903   CO289711   CO289717   CO290029   CO290462   CO290500   CO292332   CO294494   CO294641   CO298579   CO298771   CO300018   CO301449   CO302041   CO303165   CO305310   CO307079   CO308599   CO310672   CO311517   CO314314   CO317908   CO319921   CO320252   CO326780   CO329181   CO331581   CO333953   CO339217   CO342151   CO345295   CZ473291   CZ474258   CZ475579   CZ477586   CZ479296   EC058143   EC058267   EC058818   EC059188   EC060245   EC061752   EC063917   EC064542   EC067150   EC067171   EC068344   EC068593   EC070376   EC072272   EC072796   EC073716   EC075384   EC075614   EC076624   EC077488   EC079779   EC079920   EC080368   EC082008   EC085727   EC090513   EC090804   EC091152   EC195701   EC196145   EC196758   EC197082   EC198032   EC198312   EC199267   EC201104   EC203094   EC203607   EC204614   EC208792   EC210479   EC211096   EC212764   EC213459   EC213688   EC217528   EC217868   EC218929   EC219101   EC221196   EC224376   EC224588   EC225262   EC227071   EC231097   EC232545   EC240418   EC242160   EC242270   EC245061   EC246152   EC246889   EC248777   EC250012   EC251721   EC252965   EC254059   EC254246   EC254269   EC254434   EC256629   EC257569   EC258391   EC260463   EG974114   EL878127   EL878247   GH749714   GH749918   GH750844   GH752141   GH752217   GH753896   GH761238   GH771590   GH772622   GH772767   GH773109   GH773708   GH774584   GH774594   GH777932   GH777956   GH784017   GH785325   GH788535   GH788568   GH793775   GH799495   GH799800   GH808609   GH809365   GH809640   GH810257   GH810278   GH811314   GH816609   GH819200   GH821674   GH822288   GH824338   GH829796   GH830821   GH832723   GH838724   GH839570   GH847332   GH848873   GH849154   GH849350   GH852836   GH854951   GH855809   GH856411   GH856424   GH858473   GH860305   GH860961   GH861715   GH861912   GH865679   GH872657   GH873664   GH874244   GH875433   GH876055   GH877402   GH878293   GH878626   GH879940   GH887540   GH888074   GH894521   GH896670   GH896861   GH897702   GH898886   GH902124   GH903803   GH905845   GH907140   GH907738   GH911398   GH911790   GH912169   GH913696   GH915457   GH915696   GH920061   GH920987   GH922030   GH924769   GH925121   GH929262   GH933074   GH933917   GH935751   GH939873   GH940107   GH941408   GH949231   GH951785   GH953618   GH955358   GH955798   GH956395   GH956621   GH959994   GH962026   GH962136   GH962979   GH963807   GH964238   GH968181   GH969029   GH972115   GH972203   GH977673   GH978285   GH978355   GH979998   GH980441
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MRX4 Q8SZN9 Q7KSP5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   head mesoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi organism | subset   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) trunk mesoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi yolk nucleus   (Fisher et al., 2012) embryonic stage 7 -- 8   ventral nerve cord primordium   (Fisher et al., 2012) Comment:reported as ventral nerve cord anlage anterior endoderm anlage   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 9 -- 10   ventral nerve cord primordium   (Fisher et al., 2012) antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium anterior endoderm   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) inclusive hindgut primordium   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012) embryonic stage 11 -- 12   central brain primordium   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) anterior midgut primordium   (Fisher et al., 2012) embryonic central brain glial cell   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic neuroblast of ventral nerve cord primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) hindgut proper primordium   (Fisher et al., 2012) lateral cord glial cell   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) procephalic neuroblast   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) dorsal epidermis primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral epidermis primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic head sensory system   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012) sensory nervous system primordium   (Fisher et al., 2012) embryonic dorsal epidermis   (Fisher et al., 2012) embryonic ventral epidermis   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) ventral sensory complex primordium   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
[an error occurred while processing this directive] FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
[an error occurred while processing this directive]
modENCODE Development RNA-Seq
[an error occurred while processing this directive] modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
[an error occurred while processing this directive]
modENCODE Treatments RNA-Seq
[an error occurred while processing this directive]
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_11 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RE72719 RE64859 GM07658
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4Act5C.PI l(3)neo38LAS146 lethal | recessive l(3)neo381 partially lethal - majority die | recessive l(3)neo381 l(3)neo3802 viable l(3)neo38CA06556 viable, with Scer\GAL4pnr-MD237 l(3)neo38GD12076 l(3)neo38GD17123 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 l(3)neo38GD12076 l(3)neo38GD17123 Phenotype manifest in Allele chaeta | supernumerary, with Scer\GAL4pnr-MD237 l(3)neo38GD12076 mesothoracic tergum, with Scer\GAL4pnr-MD237 l(3)neo38GD12076 l(3)neo38GD17123
Classical Alleles ( 24 )
For All Classical Alleles Show
Allele of l(3)neo38 Class Mutagen Stocks Known lesion l(3)neo3802 1 Yes l(3)neo381 P-element activity 1 Yes l(3)neo385-HA-1560 1 -- l(3)neo385-HA-1823 1 -- l(3)neo38c01191 1 -- l(3)neo38c03131 1 -- l(3)neo38CB-0491-3 1 -- l(3)neo38d03325 P-element activity 1 -- l(3)neo38d05010 P-element activity 1 -- l(3)neo38e01481 piggyBac transposase 1 -- l(3)neo38KG00059 1 -- l(3)neo38KG01200 1 -- l(3)neo38MI01923 1 -- l(3)neo38NP0970 1 -- l(3)neo38NP4640 1 -- l(3)neo38NP4779 1 -- l(3)neo38[EY07970] P-element activity 1 -- l(3)neo38c00790 0 -- l(3)neo38CA06556 P-element activity 0 Yes l(3)neo38d01950 0 -- l(3)neo38d04629 0 -- l(3)neo38d07181 P-element activity 0 -- l(3)neo38d11157 P-element activity 0 -- l(3)neo38LAS146 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of l(3)neo38 Class Mutagen Stocks Known lesion l(3)neo38GD12076 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes l(3)neo38GD17123 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes l(3)neo38KK110684 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(3)neo38NIG.6930R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel7310 (Ryder, 2004.4.26) Df(3R)M-Kx1 (Spradling et al., 1999, BDGP Project Members, 1994-1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12076} NA P{GD17123} NA P{KK110684} NA P{NIG.6930R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}l(3)neo38MI01923 NA P{hsneo}l(3)neo381 NA P{PTT-GA}l(3)neo38CA06556 NA P{RS3}l(3)neo38CB-0491-3 NA P{RS5}l(3)neo385-HA-1560 NA P{RS5}l(3)neo385-HA-1823 NA P{SUPor-P}KG08621 NA P{SUPor-P}l(3)neo38KG00059 NA P{SUPor-P}l(3)neo38KG01200 NA P{UAST-YFP.Rab2}l(3)neo3802 NA PBac{PB}l(3)neo38c00790 NA PBac{PB}l(3)neo38c01191 NA PBac{PB}l(3)neo38c03131 NA PBac{RB}l(3)neo38e01481 NA insertion of mobile activating element P{EPgy2}l(3)neo38EY07970 NA P{GSV1}C547C547 NA P{GSV1}GSd452GSd452 NA P{Mae-UAS.6.11}l(3)neo38LAS146 NA P{XP}l(3)neo38d01950 NA P{XP}l(3)neo38d03325 NA P{XP}l(3)neo38d04629 NA P{XP}l(3)neo38d05010 NA P{XP}l(3)neo38d07181 NA P{XP}l(3)neo38d11157 NA insertion of enhancer trap binary system P{GAL4}ikar1 No P{GawB}l(3)neo38NP0970 No P{GawB}l(3)neo38NP4640 No P{GawB}l(3)neo38NP4779 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
imaginal disc-derived wing morphogenesis inferred from mutant phenotype (Carreira et al., 2011) regulation of chromatin silencing inferred from mutant phenotype (Schneiderman et al., 2010)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
nucleic acid binding inferred from electronic annotation with InterPro:IPR013087 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	gene_with_stop_codon_read_through (Jungreis et al., 2011) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions l(3)neo38 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6NCN02 Dipteran inclusive ortholog search EOG6XD414 Insect inclusive ortholog search EOG608M4F Arthropod inclusive ortholog search EOG6X95ZM Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6NCN02)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\l(3)neo38     Drosophila simulans   Dsim\GD20637     Drosophila sechellia   Dsec\GM26073     Drosophila erecta   Dere\GG17195     Drosophila yakuba   Dyak\GE10087     Drosophila ananassae   Dana\GF16617     Drosophila pseudoobscura pseudoobscura   Dpse\GA19962     Drosophila persimilis   Dper\GL12249     Drosophila willistoni   Dwil\GK11983     Drosophila virilis   Dvir\GJ10157     Drosophila mojavensis   Dmoj\GI10303     Drosophila grimshawi   Dgri\GH23160
Orthologs in non-Drosophila Dipterans (EOG6XD414)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011304   Anopheles gambiae Malaria mosquito  Agam\AGAP004178   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001334
Orthologs in non-Dipteran Insects (EOG608M4F)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB44350 Y Apis mellifera Western honey bee  Amel\LOC552585 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG014269 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG014426 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH23697 Y Atta cephalotes Leafcutter ant  Acep\ACEP27884 Y Atta cephalotes Leafcutter ant  Acep\ACEP27886 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO25077 Y Linepithema humile Argentine ant  Lhum\LH12771 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20879 Y Solenopsis invicta Red fire ant  Sinv\SINV16194 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI004878 Y Bombyx mori Silkmoth  Bmor\BGIBMGA005626 Y Bombyx mori Silkmoth  Bmor\BGIBMGA005627 Y Pediculus humanus Human body louse  Phum\PHUM430420 Y Pediculus humanus Human body louse  Phum\PHUM430410 Y Tribolium castaneum Red flour beetle  Tcas\GLEAN_15473 Y Tribolium castaneum Red flour beetle  Tcas\GLEAN_15472 Y
Orthologs in non-Insect Arthropods (EOG6X95ZM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Grb14 Y
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 22 )
Harvard	- P{XP}l(3)neo38d03325 - P{XP}l(3)neo38d05010 - PBac{PB}l(3)neo38c01191 - PBac{PB}l(3)neo38c03131 - PBac{RB}l(3)neo38e01481
Kyoto	123201 w1118; P{RS3}l(3)neo38CB-0491-3 125258 w1118; P{RS5}l(3)neo385-HA-1560
VDRC	v107927 P{KK110684}VIE-260B v35145 w1118; P{GD12076}v35145 v35147 w1118; P{GD12076}v35147 v46831 w1118; P{GD17123}v46831 v46830 w1118; P{GD17123}v46830/TM3
	More stocks available...
Genomic Clones ( 2 )
	BACR03D22 BACR11G22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 255 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM07658 LP14345 RE64859 RE72719 SD16005
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09034 GH13205 GH21481 GM01705 LP13255 RE02624 RE44951 RE49260 RE51160 RE57694 RE60176 RE71277 RE74117 RE75107
Other clones	1928 10989 11898 20945 28350 29102 31933 36977 38076 38883 39147 50544 50915 58586 58971 69956 71481 75083 75400 76365 76366 78211 96991 99445 102005 102931 107055 118631 120477 147925 148878 164896 165000 176692 178340 178955 214243.56 214253.48 214309.50 214315.52 214377.48 214439.63 214471.47 214473.49 214475.48 214543.46 273299 282731 AA433263 AA433276 CK01.2D.F6 CK01.8D.A10 CK01.13B.E4 CK01.17C.H3 CK01.18B.C6 CK01.28B.A8 CK01.31D.E6 CK01.63D.H4 CK01.65D.E10 CK01.68D.E1 CK01.84C.F9 CK01.84C.H8 CK01.91D.C8 CK01.91D.G8 CK01.93C.E1 CK01.95A.F10 CK01.95B.F4 CK01.102B.F7 CK01.103B.F11 CK01.117B.E1 CK01.117C.B12 CK01.118A.B6 CK01.132D.H2 CK01775 EK027451 EK044408 EK053649 EK055013 EK064062 EK067117 EK071844 EK071860 EK072917 EK074041 EK074154 EK086124 EK086822 EK089730 EK112028 EK134917 EK136213 EK137646 EK152155 EK173303 EK173830 EK177233 EK180964 EK182939 EK199849 EK207054 EK207341 EK222249 EK224763 EK235738 EK240336 EK248201 EK253458 EK258825 EK269661 EK281431 EK283131 EK292202 EK300561 EK308440 EP01239 EP04622 EP13949 EP21753 FGM304B07 IP08030 IP08130 RP003024016 RP003050291 RP003052328 RP003054635 RP003061054 RP003068126 RP003068940 RP003069473 RP003074476 RP003074910 RP003081303 RP003082947 RP003084715 RP003090303 RP003093648 RP003093795 RP003093802 RP003097670 RP003098591 RP003100755 RP003113826 RP003114558 RP003119599 RP003133017 RP003133876 RP003135045 RP003135475 RP003138058 RP003138548 RP003153725 RP003156541 RP003157794 RP003175888 RP003178651 RP003182277 RP003191656 RP003198519 RP003199329 RP003199719 RP003212558 RP003218772 RP003220433 RP003234924 RP003236338 RP003239113 RP003241065 RP003256729 RP003276741 RP003288991 RP003300618 RP003307415 RP003308841 RP003314090 RP003320789 RP003326467 RP003333303 RP003347338 RP003349047 RP003355079 RP003356827 RP003363658 RP003366585 RP003373727 RP003376324 RP003389351 RP003392456 RP003396184 RP003400591 RP003405911 RP003435278 RP003460609 RP003460818 RP003500954 RP003505746 RP003510492 RP003525646 RP003532142 RP003533130 RP003541306 RP003542028 RP003606185 RP003619769 RP003628568 RP003639844 RP003642568 RP003649138 RP003655402 RP003663268 RP003666220 RP003666381 RP003671205 RP003671908 RP004075307 RP004079617 RP004090819 RP004099694 RP004126734 RP004153629 RP004186864 RP004240706 RP004243852 RP004261210 RP004261623 RP004268760 RP004283346 RP004400905 RP004402048 RP004446540 RP004458970 RP004505994 RP004510264 RP004519640 RP004527632 RP004529678 RP004551230
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
	A. Spradling.
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: l(3)neo38 anon-EST:fe2F4 (FlyBase, 1992-) Source for merge of: l(3)neo38 BcDNA:SD16005 (FlyBase Genome Annotators, 2006, FlyBase, 1996-) Source for merge of: l(3)neo38 CG31364 (Levis, 2003.3.6)
Additional comments	Source for merge of l(3)neo38 BcDNA:SD16005 was a shared cDNA (date:030728). (FlyBase Genome Annotators, 2006, FlyBase, 1996-)
Other Comments
	New annotation (CG31364) in release 3 of the genome annotation. Annotation CG14725 was eliminated in release 3 of the genome annotation, October 2002. (FlyBase Genome Annotators, 2002-2003) Not created in release 3 of the genome annotation, April 2002. anon-EST:fe2F4 corresponds to no genome annotation - existence reported in FBrf0098343 and FBrf0120351 based on cDNAs primed from genomic runs of As in intronic or intergenic regions. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141856 NM_001043243 NM_001043244 NM_001260130 NM_001260131 NM_001260133 NM_001260134 NM_001260135 NM_001260136 NM_001275556 RefSeq (Proteins) • NP_650113 NP_001036708 NP_001036709 NP_001247059 NP_001247060 NP_001247062 NP_001247063 NP_001247064 NP_001247065 NP_001262485 DDBJ / EMBL / GenBank • AAF54696 AAL48092 AAM51075 AAN13528 ABI31165 AF005863 AFH06376 AFH06377 AFH06378 AFH06379 AFH06380 AFH06381 AFH06382 AFH06383 AI135433 AQ034103 AY070621 AY119215 BI142014 BI578793 CZ473291 CZ474258 CZ475579 CZ477586 CZ479296 Entrez Gene - A searchable database of RefSeq genes. • 41423 UniProtKB/TrEMBL • Q7KSP5 Q8MRX4 Q8SZN9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2H2 (IPR007087) Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087) Zinc finger, C2H2-like (IPR015880) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM07658 RE64859 RE72719
Linkouts
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	anon2F4 (Schmid, 1997.5.30) anon-EST:fe2F4   BcDNA:SD16005   CG6930 (Brody et al., 2002, Giot et al., 2003, Buszczak et al., 2007, Peng et al., 2007, Keleman et al., 2009.8.5, Magalhaes et al., 2007, Schneiderman et al., 2010) CG14725 (Luschnig, 2003.12.17, Akdemir et al., 2007) CG31364 (Molnar et al., 2006) l(3)neo38 (Japanese National Institute of Genetics, 2012.5.21, Zhang et al., 2007, Molnar et al., 2006, Minidorff et al., 2007, Jungreis et al., 2011, Schneiderman et al., 2010, Hoskins et al., 2011, Carreira et al., 2011)
Name Synonym	anon-fast-evolving-2F4   lethal (3) neo38
Secondary FlyBase IDs
	FBan0006930 FBgn0011471 FBgn0022340 FBgn0037947 FBgn0037948 FBgn0051364 FBgn0062876 FBgn0086910
References ( 45 )
Generate a list of	All references relating to this gene ( 45 )
List References by type	Research paper  ( 13 ) Supplementary material  ( 8 ) Personal communication to FlyBase  ( 14 ) FlyBase analysis  ( 5 ) Stock list  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Carreira et al., 2011, BMC Dev. Biol. 11: 32 Genetic basis of wing morphogenesis in Drosophila: sexual dimorphism and non-allometric effects of shape variation. [FBrf0214273] Hoskins et al., 2011, Genome Res. 21(2): 182--192 Genome-wide analysis of promoter architecture in Drosophila melanogaster. [FBrf0213090] Show all research papers ...