esi-2.1, esi-2, hp-CG4068B, hp-CG4068, esiRNA-sl-1
Supported by strand-specific RNA-Seq data.
lncRNA ; SO:0001877
Gene model reviewed during 6.17
This region contains 20 copies of a 185-270-bp repeat.
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\hpRNA:CR46342 using the Feature Mapper tool.
GBrowse - Visual display of RNA-Seq signalsView Dmel\hpRNA:CR46342 in GBrowse 2
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Source for identity of: hpRNA:CR46342 esi-2
Source for merge of: CR46342 esi-2
"esi-2" overlaps with CG4068 and consists of 20 palindromic approximately 260 nucleotide repeats.
The most abundant smallRNA derived from this hairpin is esiRNA-sl-1. Other small esiRNAs derived from this hairpin were recovered: esi-sl-2, esi-sl-3 and esi-sl-4.
esi-2 consists of 20 tandem repeats that partially overlap the 3'UTR of CG4068 and which generate phased small RNA duplexes. Each repeat adopts a hairpin structure, but higher-order hairpins are possible because repeats are complementary to each other.
New annotation (CR46342) in release 6.17 of the genome annotation.
All of the esiRNAs from this region were found in a sense orientation with respect to the orientation of CG4068 (i.e. the genomic 'minus' strand).