FB2025_01 , released February 20, 2025
Human Disease Model Report: fragile X syndrome
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General Information
Name
fragile X syndrome
FlyBase ID
FBhh0000136
Disease Ontology Term
Parent Disease
Overview

Fragile X mental retardation syndrome (FXS or FRAX) is one of several syndromes caused by mutation in the FMR1 gene, which encodes a component of an RNA-binding complex that binds to the mRNA cap and mediates translational repression. The causative genetic lesion of FXS is usually a trinucleotide (CGG)n repeat expansion within the 5' UTR of the FMR1 mRNA of >200 CGG repeats. FMR1 alleles with >200 CGG repeats undergo epigenetic silencing early in development, resulting in undetectable levels of mRNA and FMR1 protein in affected males. Smaller loss-of-function lesions in the FMR1 gene have also been implicated in FXS. See the human disease reports for fragile X syndromes (FBhh0000123) and fragile X tremor/ataxia syndrome (FBhh0000137) for additional information about fragile X models in flies.

There is a single fly ortholog of FMR1, Dmel\Fmr1, for which classical amorphic and hypomorphic alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated. Dmel\Fmr1 is also orthologous to two additional human genes, FXR1 and FXR2.

Multiple different UAS constructs of the human gene Hsap\FMR1 have been introduced into flies, including wild-type. Heterologous rescue (functional complementation) has been demonstrated: a wild-type UAS-FMR1 construct rescues neuronal and non-neuronal phenotypes of a Dmel\Fmr1 loss-of-function allele. Phosphomimetic and dephosphomimetic variants affecting a phosphorylation site thought to control FMR1 RNA-binding have also been created and tested in flies; the phosphomimetic variant rescues tested phenotypes of a Dmel\Fmr1 amorphic allele. The orthologous human genes Hsap\FXR1 and Hsap\FXR2 have also been introduced into flies; expression of either of these two genes rescues the non-neuronal phenotypes of a Dmel\Fmr1 loss-of-function allele, but fails to rescue the neuronal phenotypes.

Variant(s) implicated in human disease tested (as analogous mutation in fly gene): R140Q in the fly Fmr1 gene (corresponds to R138Q in the human FMR1 gene); I307N in the fly Fmr1 gene (corresponds to I304N in the human FMR1 gene).

Most amorphic mutations of Dmel\Fmr1 are semi-lethal, with the majority of animals dying during the pupal stage; effects can be studied in larvae and in surviving adults. Adults exhibit neurological phenotypes such as memory defective, locomotor rhythm defective, courtship behavior defective, and neuroanatomy defective; males sterility or semi-sterility is observed for several alleles; sleep and circadian defects have been observed. Extensive physical and genetic interactions of Dmel\Fmr1 have been described; see below and in the gene report for Fmr1.

The Drosophila microRNA mir-219 has been shown to regulate Fmr1 levels via binding sites in the Fmr1 mRNA 3' UTR. Larvae overexpressing mir-219 exhibit morphological abnormalities at the neuromuscular junction.

Symptoms overlapping those of autism spectrum disorder (FBhh0000514) are frequently observed in individuals with fragile X syndrome; this aspect of FXS has also been investigated in flies using Fmr1. RNAi-effected loss of function leads to reduced behavioral flexibility as shown by severe reversal-learning impairment; it is postulated that this phenotype results from the failure to properly activate Rac1-dependent forgetting.

A fly model investigating insulin misregulation in Fmr1 mutant animals has been developed ('insulin pathway effects, FMR1-related' FBhh0000957). Expression of Dmel\Fmr1 in the insulin-producing cells (IPCs) of the brain is sufficient to restore normal circadian behavior and to rescue the memory deficit phenotype of animals carrying loss-of-function Fmr1 mutations.

[updated Mar. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: fragile X syndrome
OMIM report

[FRAGILE X SYNDROME; FXS](https://omim.org/entry/300624)

Human gene(s) implicated

[FRAGILE X MESSENGER RIBONUCLEOPROTEIN 1; FMR1](https://omim.org/entry/309550)

Symptoms and phenotype

Fragile X mental retardation is characterized by moderate to severe mental retardation, macroorchidism (abnormally large testes), and distinct facial features. Fragile X syndrome accounts for about one-half of cases of X-linked mental retardation and is the second most common cause of mental impairment after trisomy 21 (Rousseau et al., 1995; pubmed:7485149). [from MIM:300624; 2016.01.15]

Genetics

Fragile X mental retardation syndrome is inherited as an X-linked dominant; usually males are more severly affected; severity and penetrance are also dependent upon the sex and phenotype of the carrier parent. The vast majority of cases are caused by a trinucleotide (CGG)n repeat expansion of greater than 200 repeats in the FMR1 gene. [from MIM:300624; 2016.01.15]

Cellular phenotype and pathology
Molecular information

The FMR1 protein is part of an RNA-binding complex that binds to the mRNA cap and mediates translational repression; may also play a role in intracellular transport of mRNA from the nucleus to the cytoplasm. [UniProt:Q06787; 2016.01.15]

FMR1 encodes a multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs. [Gene Cards, FMR1; 2019.01.14]

The disease-implicated CGG-repeat tract is contained within the 5-prime untranslated region (5' UTR) of the FMR1 mRNA. FMR1 alleles with >200 CGG repeats undergo epigenetic silencing early in development, resulting in undetectable levels of mRNA and FMR1 protein (Primerano et al., 2002; pubmed:12515381). [from MIM:300624, MIM:309550; 2016.01.15]

External links
Disease synonyms
fragile X mental retardation syndrome
fragile X sydrome
FRAX
FRAXA
FXS
intellectual disability
intellectual disability, fragile X syndrome
Martin-Bell syndrome
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

Many to one: 3 human to 1 Drosophila. Three human genes, FMR1, FXR1 and FXR2, are orthologous to the fly gene Dmel\Fmr1.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (2)
    Gene Snapshot
    Fmr1 (Fmr1) encodes an RNA and channel binding protein. It acts as a neural growth brake regulating RNA trafficking, RNA translation and neuronal excitability. Fmr1 loss causes Fragile X syndrome. [Date last reviewed: 2019-03-07]
    Gene Groups / Pathways
    Comments on ortholog(s)

    Ortholog of human gene FMR1, FXR1 and FXR2 (1 Drosophila to 3 human). Dmel\Fmr1 shares 36-38% identity and 51-53% similarity with each of the 3 human genes.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Cellular component (GO)
    Gene Groups / Pathways
      Comments on ortholog(s)

      Orthologous to human miR-219-5p (FBrf0242402); miR-219-5p corresponds to MIR219A1 and MIR219A2 (miRBase).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (125 groups)
        protein-protein
        Interacting group
        Assay
        References
        pull down, autoradiography, anti bait coimmunoprecipitation, primer specific pcr, anti tag coimmunoprecipitation, quantitative reverse transcription pcr, western blot
        tandem affinity purification, western blot, anti tag coimmunoprecipitation, peptide massfingerprinting
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, western blot, molecular sieving, ion exchange chromatography, peptide massfingerprinting, pull down, autoradiography, anti tag western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, anti tag western blot, pull down, autoradiography
        anti tag coimmunoprecipitation, western blot
        two hybrid, anti bait coimmunoprecipitation, western blot, pull down, Identification by mass spectrometry
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, peptide massfingerprinting
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, western blot
        pull down, autoradiography, anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, peptide massfingerprinting
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot, pull down
        molecular sieving, molecular weight estimation by staining, anti tag coimmunoprecipitation, Identification by mass spectrometry, anti tag western blot, western blot, pull down
        anti tag coimmunoprecipitation, anti tag western blot
        anti bait coimmunoprecipitation, western blot, pull down, Identification by mass spectrometry, enzymatic study
        pull down, western blot
        anti tag coimmunoprecipitation, western blot, coimmunoprecipitation
        anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, anti tag western blot, coimmunoprecipitation, peptide massfingerprinting, anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, peptide massfingerprinting, western blot
        anti bait coimmunoprecipitation, western blot, Identification by mass spectrometry
        anti tag coimmunoprecipitation, anti tag western blot, pull down, western blot, anti bait coimmunoprecipitation
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, pull down
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, peptide massfingerprinting, pull down, autoradiography, anti bait coimmunoprecipitation, Identification by mass spectrometry, western blot, anti tag western blot
        electron microscopy, inferred by author, pull down, anti tag western blot, anti tag coimmunoprecipitation, peptide massfingerprinting, cross-linking study, anti bait coimmunoprecipitation, Identification by mass spectrometry, autoradiography
        pull down, autoradiography, anti tag coimmunoprecipitation, peptide massfingerprinting, anti tag western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, Identification by mass spectrometry
        anti bait coimmunoprecipitation, western blot, pull down, Identification by mass spectrometry
        anti tag coimmunoprecipitation, western blot, anti tag western blot
        coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, anti tag western blot, western blot, Identification by mass spectrometry, anti tag coimmunoprecipitation, cosedimentation through density gradient, coimmunoprecipitation
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, Identification by mass spectrometry, cosedimentation through density gradient
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, molecular sieving, ion exchange chromatography
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, molecular sieving, ion exchange chromatography, peptide massfingerprinting
        anti tag coimmunoprecipitation, Identification by mass spectrometry, pull down, molecular weight estimation by staining, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, Identification by mass spectrometry, anti bait coimmunoprecipitation, anti tag western blot
        RNA-protein
        Interacting group
        Assay
        References
        pull down, autoradiography, anti bait coimmunoprecipitation, primer specific pcr, anti tag coimmunoprecipitation, quantitative reverse transcription pcr, western blot
        anti tag coimmunoprecipitation, northern blot, electrophoretic mobility shift assay, autoradiography
        anti tag coimmunoprecipitation, reverse transcription pcr
        anti bait coimmunoprecipitation, reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, clip-seq
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, primer specific pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, quantitative reverse transcription pcr, reverse transcription pcr, proximity labelling technology, nucleotide sequence identification
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, primer specific pcr, full identification by DNA sequencing
        clip-seq, anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, clip-seq
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, primer specific pcr, anti tag coimmunoprecipitation, reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, reverse transcription pcr
        anti tag coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, clip-seq
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, northern blot
        anti tag coimmunoprecipitation, northern blot
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, northern blot
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, reverse transcription pcr, anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, anti tag coimmunoprecipitation, northern blot
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, reverse transcription pcr
        anti tag coimmunoprecipitation, reverse transcription pcr
        anti tag coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, reverse transcription pcr
        coimmunoprecipitation, quantitative reverse transcription pcr, pull down
        anti bait coimmunoprecipitation, reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, clip-seq
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti tag coimmunoprecipitation, quantitative reverse transcription pcr, reverse transcription pcr
        clip-seq, anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr, clip-seq
        anti bait coimmunoprecipitation, quantitative reverse transcription pcr
        RNA-RNA
        Interacting group
        Assay
        References
        western blot, luminiscence technology
        luminiscence technology, necessary binding region, fluorescence technology
        luminiscence technology
        RNA-RNA
        Interacting group
        Assay
        References
        western blot, luminiscence technology
        fluorescence technology, luminiscence technology
        quantitative reverse transcription pcr, western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (45 alleles)
        Models Based on Experimental Evidence ( 34 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 18 )
        Allele
        Disease
        Interaction
        References
        exacerbates  Troyer syndrome
        Models Based on Experimental Evidence ( 3 )
        Modifiers Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Interaction
        References
        Models Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 3 )
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        P-element activity
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        ethyl methanesulfonate
        Delta2-3 transposase
        amorphic allele - genetic evidence
        Delta2-3 transposase
        amorphic allele - genetic evidence
        Delta2-3 transposase
        loss of function allele
        Delta2-3 transposase
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        Delta2-3 transposase
        amorphic allele - genetic evidence
        Delta2-3 transposase
        loss of function allele
        P-element activity
        amorphic allele - molecular evidence
        ends-out gene targeting
        References (136)