FB2025_01 , released February 20, 2025
Human Disease Model Report: autism spectrum disorder, susceptibility to, UBE3A-related
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General Information
Name
autism spectrum disorder, susceptibility to, UBE3A-related
FlyBase ID
FBhh0000515
OMIM
Overview

The human gene UBE3A has been identified as a susceptibility locus for autism spectrum disorder (FBhh0000514) in a number of studies. Ube3a encodes the ubiquitin protein ligase E3A, which acts in the ubiquitin proteasome pathway and as a transcriptional coactivator; the Ube3a gene is subject to genomic imprinting. There is a single orthologous gene in Drosophila, Dmel\Ube3a, for which classical amorphic alleles, RNAi targeting constructs, and alleles caused by insertional mutagenesis have been generated. The human UBE3A gene is also implicated in Angelman syndrome (FBhh0000081); loss or reduction of UBE3A function appears to result in Angelman syndrome, whereas increased activity due to extra copies or specific missense mutations are implicated in autism spectrum disorder.

Multiple UAS constructs of the human Hsap\UBE3A gene have been introduced into flies, representing different protein isoforms of the wild-type UBE3A gene. Heterologous rescue (functional complementation) of loss-of-function larval learning defects has been demonstrated.

The human UBE3A gene is within a chromosomal region susceptible to duplication, the 15q11-q13 region (see MIM:608636). These duplications result in a spectrum of variable phenotypes described as chromosome 15q11-q13 region duplication syndrome; phenotypes include autism, mental retardation, ataxia, seizures, developmental delays, and behavioral problems. Little is known about how much UBE3A, as opposed to other genes within the duplicated region, contributes to the various phenotypes. The UBE3A gene has been shown to be subject to genomic imprinting.

Animals homozygous for amorphic mutations of Dmel\Ube3a are viable and fertile, however, they have neuroanatomy abnormalities and show defects in locomotive behavior, circadian rhythms, and long-term memory. Both up-regulation of and down-regulation of Ube3a are detrimental to learning in larvae and adults, and both deficiency and neural over-expression of Ube3a alters neurotransmission at the larval neuromuscular junction. RNAi-effected loss of function leads to reduced behavioral flexibility as shown by severe reversal-learning impairment. Genetic and physical interactions for Dmel\Ube3a have been described; see below and in the Ube3a gene report.

[updated Jan. 2021 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: autism spectrum disorder, susceptibility to
Symptoms and phenotype

Autism, the prototypic pervasive developmental disorder (PDD), is usually apparent by 3 years of age. It is characterized by a triad of limited or absent verbal communication, a lack of reciprocal social interaction or responsiveness, and restricted, stereotypic, and ritualized patterns of interests and behavior (Bailey et al., 1996, pubmed:8655659; Risch et al., 1999, pubmed:10417292). 'Autism spectrum disorder,' sometimes referred to as ASD, is a broader phenotype encompassing the less severe disorders Asperger syndrome (MIM:608638) and pervasive developmental disorder, not otherwise specified (PDD-NOS). 'Broad autism phenotype' includes individuals with some symptoms of autism, but who do not meet the full criteria for autism or other disorders. Mental retardation coexists in approximately two-thirds of individuals with ASD, except for Asperger syndrome, in which mental retardation is conspicuously absent (Jones et al., 2008; pubmed:18698615). [from MIM:209850; 2017.03.18]

Specific Disease Summary: autism spectrum disorder, susceptibility to, UBE3A-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype

Dup15q is characterized by hypotonia and motor delays, intellectual disability, autism spectrum disorder (ASD), and epilepsy including infantile spasms. [Gene Reviews, 15q Duplication Syndrome and Related Disorders; 2020.08.29]

Genetics

Deletion of UBE3A causes the neurodevelopmental disorder Angelman syndrome (AS); maternally-derived duplication or triplication of UBE3A is linked to autism; some missense mutations have been characterized (Yi et al., 2015; pubmed:26255772 and references cited therein).

UBE3A is imprinted with maternal-specific expression in postnatal neurons, and thus expressed at a higher dosage in brain from individuals with a maternally derived duplication. [Gene Reviews, 15q Duplication Syndrome and Related Disorders; 2021.01.10]

The SFARI Gene autism database ( https:gene.sfari.org ) rates the gene-autism association for UBE3A as high confidence (score 1). [2020.11.05]

The proximal 15q region includes five regions of segmental duplications or low copy repeats (designated by breakpoints [BPs]), which result in increased susceptibility to genomic rearrangements. These five regions are termed BP1 through BP5. The Prader-Willi/Angelman critical region (PWACR) lies between BP2 and BP3; UBE3A lies within the PWACR. [Gene Reviews, 15q Duplication Syndrome and Related Disorders; 2021.01.10]

The human UBE3A gene is within a chromosomal region susceptible to duplication, the 15q11-q13 region. These duplications result in a spectrum of variable phenotypes described as chromosome 15q11-q13 region duplication syndrome; phenotypes include autism, mental retardation, ataxia, seizures, developmental delays, and behavioral problems (Bundey et al., 1994, pubmed:8050626; Burnside et al., 2011, pubmed:21359847). [from MIM:608636; 2018.11.06]

Cellular phenotype and pathology
Molecular information

UBE3A functions as both an E3 ligase in the ubiquitin proteasome pathway and as a transcriptional coactivator. The UBE3A gene is subject to genomic imprinting, with preferential maternal-specific expression in brain and, more specifically, in neurons but not in glia (Dindot et al., 2008, pubmed:17940072). [From MIM:601623, 2017.03.18]

External links
Disease synonyms
AUTS4
Search term: chromosome 15q duplication
Search term: duplication 15q syndrome
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
D. melanogaster ortholog (based on DIOPT)
Comments on ortholog(s)

One to one (1 human to 1 Drosophila).

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (1)
    Gene Snapshot
    Ubiquitin protein ligase E3A (Ube3a) encodes the founding member of the HECT-type ubiquitin E3 ligase family of enzymes. It is involved in the final step of conjugation of ubiquitin to its target substrates. It regulates protein degradation by targeting modified proteins to the proteasome or by regulating the proteasome activity through ubiquitination of its subunits, which in turn affects many aspects of neuronal function, such as synaptic plasticity, long-term memory or dendritic development. [Date last reviewed: 2019-02-28]
    Molecular function (GO)
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human UBE3A (1 Drosophila to 1 human); Dmel\Ube3a shares 41% identity and 57% similarity with the human gene.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (5 groups)
      protein-protein
      Interacting group
      Assay
      References
      enzymatic study, western blot
      anti tag coimmunoprecipitation, anti tag western blot
      anti tag coimmunoprecipitation, anti tag western blot
      anti tag coimmunoprecipitation, western blot, anti tag western blot, enzymatic study
      anti tag coimmunoprecipitation, anti tag western blot
      Alleles Reported to Model Human Disease (Disease Ontology) (15 alleles)
      Models Based on Experimental Evidence ( 13 )
      Modifiers Based on Experimental Evidence ( 2 )
      Allele
      Disease
      Interaction
      References
      is ameliorated by Mad12
      is ameliorated by tkv8
      is ameliorated by tkvk16713
      Models Based on Experimental Evidence ( 2 )
      Modifiers Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      amorphic allele - molecular evidence
      P-element activity
      amorphic allele - molecular evidence
      P-element activity
      amorphic allele - molecular evidence
      P-element activity
      amorphic allele - molecular evidence
      Delta2-3 transposase
      amorphic allele - molecular evidence
      P-element activity
      amorphic allele - molecular evidence
      ethyl methanesulfonate
      amorphic allele - molecular evidence
      ethyl methanesulfonate
      References (17)