FB2025_01 , released February 20, 2025
Human Disease Model Report: autism spectrum disorder, susceptibility to, NLGN-related
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General Information
Name
autism spectrum disorder, susceptibility to, NLGN-related
FlyBase ID
FBhh0000517
OMIM
Overview

The human NLGN1, NLGN3 and NLGN4X genes have been identified as susceptibility loci for autism spectrum disorder (FBhh0000514). These genes encode neuroligins, which are ligands of neurexin; the neurexin/neuroligin complex is present at neural synapses and is required for efficient neurotransmission and in the formation of synaptic contacts. There are multiple neuroligin genes in both human and Drosophila; Dmel\Nlg2, Dmel\Nlg3 and Dmel\Nlg4 have been used to investigate the role of neuroligins in the development of autism spectrum disorder. Loss-of-function alleles, RNAi targeting constructs, and alleles caused by insertional mutagenesis have been generated for both Drosophila genes.

UAS constructs of the human Hsap\NLGN1 gene, including wild-type and a variant postulated to be associated with autism, have been introduced into flies and are available. A UAS construct of the human Hsap\NLGN3 gene carrying a variant postulated to be associated with autism has been introduced into flies and is available. See the 'Disease-Implicated Variants' table below. The human NLGN4X gene has been introduced into flies.

Amorphic mutations of Dmel\Nlg4 are homozygous lethal. RNAi-effected loss of function leads to reduced behavioral flexibility as shown by severe reversal-learning impairment; it is postulated that this phenotype results from the failure to properly activate Rac1-dependent forgetting. An amorphic mutation of Dmel\Nlg2 is viable and fertile, but exhibits behavioral, locomotor, and neurophysiology defects. Loss-of-function mutations of Dmel\Nlg3 result in locomotor defects; an amorphic genotype also results in sex-specific social distancing defects. Pan-neuronal overexpression of Nlg3 results in sex-specific social distancing defects and other behavioral phenotypes.

Experiments in flies include characterization of a mutation in Nlg2 analogous to an NLGN3 variant associated with autism in human; see the human disease report 'autism spectrum disorder, susceptibility to, X-linked 1' (FBhh0000521) and the 'Disease-Implicated Variants' table below.

[updated Mar. 2022 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: autism spectrum disorder, susceptibility to
Symptoms and phenotype

Autism, the prototypic pervasive developmental disorder (PDD), is usually apparent by 3 years of age. It is characterized by a triad of limited or absent verbal communication, a lack of reciprocal social interaction or responsiveness, and restricted, stereotypic, and ritualized patterns of interests and behavior (Bailey et al., 1996, pubmed:8655659; Risch et al., 1999, pubmed:10417292). 'Autism spectrum disorder,' sometimes referred to as ASD, is a broader phenotype encompassing the less severe disorders Asperger syndrome (MIM:608638) and pervasive developmental disorder, not otherwise specified (PDD-NOS). 'Broad autism phenotype' includes individuals with some symptoms of autism, but who do not meet the full criteria for autism or other disorders. Mental retardation coexists in approximately two-thirds of individuals with ASD, except for Asperger syndrome, in which mental retardation is conspicuously absent (Jones et al., 2008; pubmed:18698615). [from MIM:209850; 2017.03.18]

Specific Disease Summary: autism spectrum disorder, susceptibility to, NLGN-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

Neuroligins function as ligands for the neurexins, which are cell-surface receptors. The Ca(2+)-dependent neurexin/neuroligin complex is present at synapses in the central nervous system, is required for efficient neurotransmission, and is involved in the formation of synaptic contacts (summary by Reissner et al., 2008; pubmed:18812509). [from MIM:600568; 2017.03.18]

External links
Disease synonyms
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
Comments on ortholog(s)

Many to many; multiple genes in both species.

Human gene (HGNC)
Symbol / Name
Comments on ortholog(s)

Many to many; multiple genes in both species.

Human gene (HGNC)
Symbol / Name
Comments on ortholog(s)

Many to many; multiple genes in both species.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (3)
    Gene Snapshot
    Neuroligin 2 (Nlg2) encodes a transmembrane protein that interacts with the product of Nrx-1, and recruits scaffolding proteins for organization of postsynaptic neurotransmitter receptors. The product of Nlg2 functions in synaptic growth and regulation, and is involved in the modulation of social and courtship behavior. [Date last reviewed: 2019-03-14]
    Gene Groups / Pathways
    Comments on ortholog(s)

    Many to many; multiple genes in both species. Moderate-scoring ortholog of human NLGN1 NLGN3, and NLGN4X.

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Gene Snapshot
    Neuroligin 4 (Nlg4) encodes a synaptic adhesion molecule involved in synapse formation and synaptic transmission. [Date last reviewed: 2019-03-14]
    Gene Groups / Pathways
      Comments on ortholog(s)

      Many to many; multiple genes in both species. Moderate-scoring ortholog of NLGN1, NLGN3, and NLGN4X.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Snapshot
      Neuroligin 3 (Nlg3) encodes a synaptic adhesion molecule involved in synapse formation and synaptic transmission. [Date last reviewed: 2019-03-14]
      Gene Groups / Pathways
        Comments on ortholog(s)

        Many to many; multiple genes in both species. Moderate- to high-scoring ortholog of human NLGN3, NLGN1, NLGN4X, NLGN2, and NLGN4Y.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Other Genes Used: Viral, Bacterial, Synthetic (0)
          Summary of Physical Interactions (8 groups)
          protein-protein
          Interacting group
          Assay
          References
          anti bait coimmunoprecipitation, western blot
          anti bait coimmunoprecipitation, western blot
          anti tag coimmunoprecipitation, Identification by mass spectrometry, western blot, pull down
          anti tag coimmunoprecipitation, Identification by mass spectrometry, pull down, western blot
          RNA-RNA
          Interacting group
          Assay
          References
          luminiscence technology, necessary binding region
          RNA-protein
          Interacting group
          Assay
          References
          protein-protein
          Interacting group
          Assay
          References
          anti bait coimmunoprecipitation, anti tag western blot
          anti tag coimmunoprecipitation, western blot, pull down, anti bait coimmunoprecipitation, anti tag western blot
          Alleles Reported to Model Human Disease (Disease Ontology) (6 alleles)
          Models Based on Experimental Evidence ( 2 )
          Modifiers Based on Experimental Evidence ( 1 )
          Allele
          Disease
          Interaction
          References
          Models Based on Experimental Evidence ( 1 )
          Allele
          Disease
          Evidence
          References
          Modifiers Based on Experimental Evidence ( 1 )
          Allele
          Disease
          Interaction
          References
          Models Based on Experimental Evidence ( 2 )
          Modifiers Based on Experimental Evidence ( 0 )
          Allele
          Disease
          Interaction
          References
          Alleles Representing Disease-Implicated Variants
          Genetic Tools, Stocks and Reagents
          Sources of Stocks
          Contact lab of origin for a reagent not available from a public stock center.
          Bloomington Stock Center Disease Page
          Related mammalian, viral, bacterial, or synthetic transgenes
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila transgenes
          Allele
          Transgene
          Publicly Available Stocks
          RNAi constructs available
          Allele
          Transgene
          Publicly Available Stocks
          Selected Drosophila classical alleles
          Allele
          Allele class
          Mutagen
          Publicly Available Stocks
          ends-out gene targeting
          ends-out gene targeting
          amorphic allele - molecular evidence
          FLPase
          amorphic allele - molecular evidence
          piggyBac activity
          amorphic allele - molecular evidence
          ends-out gene targeting
          amorphic allele - molecular evidence
          ends-out gene targeting
          amorphic allele - molecular evidence
          ends-out gene targeting
          amorphic allele - molecular evidence
          ends-out gene targeting
          References (20)