FB2025_01 , released February 20, 2025
Human Disease Model Report: cancer, epithelial, TNF-SCRIB-RAS-related
Open Close
General Information
Name
cancer, epithelial, TNF-SCRIB-RAS-related
FlyBase ID
FBhh0000927
Disease Ontology Term
Parent Disease
OMIM
Overview

This Drosophila model of epithelial cancer builds upon a model using the fly polarity gene scrib and the fly tumor necrosis factor (TNF) family gene egr (see FBhh0000926), with the addition of an activated form of the Drosophila Ras85D gene. Among the questions addressed is one raised by the dual role of TNF in human cancers, where there is evidence of both pro-tumor and anti-tumor activities.

Tumor necrosis factor (TNF) proteins are transmembrane proteins that can be released from the cell membrane by extracellular proteolytic cleavage; they can act via both autocrine and paracrine signaling. This is a large gene family in human; in Drosophila there is a single TNF gene, eiger (egr). Animals homozygous for the loss-of-function mutation of egr1 are viable and fertile, with minor feeding and immune response phenotypes. Using the scrib model, egr has been found to play a significant role in tumorigenesis in that system. In contrast to the result in wild-type egr animals, somatic scrib(-) clones induced in eye or wing imaginal discs of egr1 homozygous larvae grow aggressively and develop into non-invasive tumors; the animals typically die in the pupal stage. Thus presence of wild-type egr is these experiments serves an anti-tumor function. (See the human disease model report 'cancer, epithelial, TNF-SCRIB-related' FBhh0000926.)

When somatic clones that carry both a scrib(-) mutation and the Ras85DV12 activated mutation are induced in wild-type larvae, invasive tumors are observed (see the human disease model report 'cancer, epithelial, RAS-SCRIB-related' FBhh0000585). However, when the same experiment is done in larvae homozygous for a loss-of-function mutation of egr, the response is less severe and non-invasive, resulting in a hyperplastic rather than a neoplastic pattern of proliferation. In this system, the presence of wild-type egr serves a pro-tumor function; it appears to be required for progression to neoplastic growth. In contrast to the scrib(-) egr(-) result, which appears to disrupt a cell autonomous process, egr in this case appears to act in a non-cell-autonomous fashion. It is postulated that egr expression in tumor-associated hemocytes plays a role in the observed pro-tumor response.

Comparable experiments using animals with RNAi-mediated knockdown of the Drosophila TNF receptor gene grnd give similar results: the extreme invasive phenotypes of scrib(-), Ras85DV12 clones are not observed in animals with reduced levels of grnd.

Based on transplantation experiments in which a small piece of the tumor is implanted in the abdomen of an female adult host and assessed for capacity to regenerate a solid tumor, it has been suggested that the role of egr in tumorigenesis is of a paracrine type, mainly restricted to mediating interactions between tumor-initiating and surrounding wild-type epithelial cells. However, see the human disease model report 'cancer, epithelial, ALG3-related' (FBhh0000929), for which there is support for an endocrine-type function of egr in the context of a cancer disease model.

See also the human disease model reports 'cancer, epithelial, SCRIB-related' FBhh0000587; 'cancer, multiple, RAS-related' FBhh0000474.

[updated Nov. 2018 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: cancer, epithelial, TNF-SCRIB-RAS-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

TNF-α acts in both transmembrane and soluble forms; the transmembrane form of the ligand appears to mediate therapeutic effects, whereas the soluble ligand is linked to pathologic effects. (Aggarwal et al., 2012; pubmed:22053109).

The SCRIB gene encodes a scaffold protein involved in cell polarization processes; it is involved in tumor suppression pathways (Gene Cards, SCRIB; 2017.08.01).

The tumor necrosis factor (TNF) superfamily is a protein superfamily of type II transmembrane proteins containing TNF homology domain and forming trimers. Members of this superfamily can be released from the cell membrane by extracellular proteolytic cleavage. TNF proteins are expressed predominantly by immune cells and regulate diverse cell functions, including regulation of immune response and inflammation, but also proliferation, differentiation, apoptosis and embryogenesis. The superfamily contains 19 members that bind to 29 members of TNF receptor superfamily. [https://en.wikipedia.org/wiki/Tumor_necrosis_factor_superfamily] This protein family is also called the TNF ligand family.

TNF proteins can act via both autocrine and paracrine signaling (Caldwell et al., 2014; pubmed:25274725).

HGNC currently lists 18 genes in the Tumor Necrosis Factor Superfamily (https://www.genenames.org/data/genegroup/#!/group/781)

External links
Disease synonyms
Search term: metastatic phenotype(s)
Ortholog Information
Human gene(s) in FlyBase
    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (4)
      Gene Snapshot
      eiger (egr) encodes the TNF superfamily ligand that activates the intracellular JNK pathway through its receptor encoded by grnd or wgn. Its roles include cell death, tumor suppression, tumor promotion, growth regulation, host defense, pain sensitization, and nutrient response. [Date last reviewed: 2018-10-11]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Sole TNF family gene in Drosophila (1 Drosophila to many human); Dmel\egr is most closely related to human EDA, TNFSF13, and TNFSF13B.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Snapshot
      scribble (scrib) encodes a scaffolding protein that is part of the conserved machinery regulating apicobasal polarity. It acts with the products of dlg1 and l(2)gl to distinguish the basolateral domain of epithelial cells and neuroblasts, via reciprocally antagonistic interactions with the aPKC/par-6 complex that impacts vesicle trafficking. The product of scrib also organizes synaptic architecture and is implicated in learning and memory. [Date last reviewed: 2019-03-14]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Ortholog of human SCRIB and LRRC1 (1 Drosophila to 2 human); Dmel\scrib shares 33% identity and 45% similarity with the human SCRIB gene. The human LRRC1 gene encodes a much smaller protein, corresponding to the amino end of SCRIB and Dmel\scrib; it shares 57% identity and 73% similarity with Dmel\scrib within that extent.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Snapshot
      Ras oncogene at 85D (Ras85D) encodes a protein that acts downstream of several cell signals, most notably from Receptor Tyrosine Kinases, to regulate tissue growth and development. When abnormally activated it can direct developmental defects and tissue hyperplasia, mimicking aspects of human disease including Rasopathies and cancer, respectively. [Date last reviewed: 2019-03-14]
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human genes KRAS, HRAS, and NRAS (many to many; multiple paralogs and orthologs in both species). Dmel\Ras85D shares 78-86% identity and 86-92% similarity with KRAS, HRAS, and NRAS; for these three human genes, Ras85D is the highest-scoring ortholog in Drosophila.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Snapshot
      grindelwald (grnd) encodes a receptor of the TNF superfamily ligand encoded by egr, which activates the intracellular JNK pathway. It is involved in apoptosis and neoplastic growth. [Date last reviewed: 2019-09-19]
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      None of the TNF receptor genes in human has been identified as orthologous to grnd.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (53 groups)
        protein-protein
        Interacting group
        Assay
        References
        static light scattering
        pull down, western blot
        static light scattering, anti tag coimmunoprecipitation, anti tag western blot, pull down, molecular weight estimation by staining, x-ray crystallography, isothermal titration calorimetry, predetermined participant, molecular sieving
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot
        anti bait coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, anti tag western blot, static light scattering, isothermal titration calorimetry, predetermined participant, molecular sieving, molecular weight estimation by staining
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, anti tag western blot
        proximity ligation assay, fluorescence microscopy
        proximity-dependent biotin identification, western blot, anti tag coimmunoprecipitation, colocalization, fluorescence microscopy, inferred by author, proximity ligation assay, anti bait coimmunoprecipitation
        proximity ligation assay, fluorescence microscopy
        anti bait coimmunoprecipitation, western blot, isothermal titration calorimetry, predetermined participant, x-ray crystallography
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, western blot, pull down
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, western blot
        anti tag coimmunoprecipitation, anti tag western blot
        pull down, autoradiography
        anti tag coimmunoprecipitation, western blot
        pull down, autoradiography, two hybrid, anti tag coimmunoprecipitation, anti tag western blot
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        two hybrid, anti tag coimmunoprecipitation, autoradiography
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        gtpase assay, autoradiography
        anti tag coimmunoprecipitation, peptide massfingerprinting
        pull down, western blot, two hybrid
        anti tag coimmunoprecipitation, peptide massfingerprinting
        two hybrid, pull down, anti tag coimmunoprecipitation, anti tag western blot
        pull down, anti tag western blot
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, peptide massfingerprinting
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, Identification by mass spectrometry, pull down, covalent binding, western blot
        protein-protein
        Interacting group
        Assay
        References
        static light scattering, anti tag coimmunoprecipitation, anti tag western blot, pull down, molecular weight estimation by staining, x-ray crystallography, isothermal titration calorimetry, predetermined participant, molecular sieving
        pull down, molecular weight estimation by staining, anti tag coimmunoprecipitation, anti tag western blot
        pull down, molecular weight estimation by staining
        Alleles Reported to Model Human Disease (Disease Ontology) (51 alleles)
        Models Based on Experimental Evidence ( 5 )
        Modifiers Based on Experimental Evidence ( 10 )
        Models Based on Experimental Evidence ( 10 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 11 )
        Allele
        Disease
        Interaction
        References
        model of  carcinoma
        is ameliorated by CtBPHMS00677
        is ameliorated by CtBPJF01291
        is ameliorated by pucUAS.cMa
        model of  cancer
        model of  cancer
        model of  carcinoma
        is ameliorated by licGD7546
        is ameliorated by licJF01433
        is ameliorated by panJF02306
        is ameliorated by wgGD5007
        is ameliorated by Toll-7GD14417
        is ameliorated by Toll-7HM05230
        model of  carcinoma
        is exacerbated by Rho172F
        is exacerbated by RokGD1522
        is exacerbated by Toll-6GD14438
        is exacerbated by Toll-6GD35
        is exacerbated by kstGLC01654
        is exacerbated by sqhGL00663
        is exacerbated by zipGD1566
        is exacerbated by DefSK3
        is exacerbated by egr3
        is exacerbated by bskDN.UAS.cUa
        is ameliorated by msnUAS.cSa
        is ameliorated by Diap1UAS.cHa
        is ameliorated by Ire1GD3071
        is ameliorated by Ire1f02170
        is ameliorated by Xbp1GD4745
        is exacerbated by bskDN.UAS
        model of  cancer
        is ameliorated by hepr75
        is ameliorated by ykiB5
        is ameliorated by egr1
        is ameliorated by Ilp21
        is exacerbated by Ilp2UAS.cBa
        is ameliorated by Ilp53
        is exacerbated by InRUAS.Exel
        is exacerbated by chico1
        model of  carcinoma
        is exacerbated by aptGD1367
        is ameliorated by aptUAS.cEa
        is ameliorated by Gadd45KK104250
        is ameliorated by GlyatTH00482
        is ameliorated by Glyatc02982
        is ameliorated by Gadd45HMS01436
        Models Based on Experimental Evidence ( 16 )
        Allele
        Disease
        Evidence
        References
        model of  cancer
        Modifiers Based on Experimental Evidence ( 18 )
        Allele
        Disease
        Interaction
        References
        model of  cancer
        is exacerbated by ITPUAS.F
        model of  cancer
        is ameliorated by InRGL00139
        is ameliorated by InRJF01183
        is ameliorated by InRJF01482
        is ameliorated by NetBΔ
        is ameliorated by NetBKK103672
        is ameliorated by unc-5MI04273
        is ameliorated by bskDN.UAS
        is ameliorated by bskHMS00777
        is exacerbated by hepAct.UAS
        is exacerbated by imdUAS.cGa
        is ameliorated by JraNIG.2275R
        is ameliorated by TimpUAS.cPa
        ameliorates  cancer
        model of  kidney cancer
        is ameliorated by Pka-C1B3
        is ameliorated by mTorΔP
        model of  cancer
        is exacerbated by exe1
        is exacerbated by Ptp61FΔ
        is exacerbated by M6W186stop
        is ameliorated by Ptip3804
        is exacerbated by p53UAS.cUa
        is ameliorated by Ilp8MI00727
        Models Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 4 )
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        amorphic allele - molecular evidence
        loss of function allele
        loss of function allele
        P-element activity
        amorphic allele - genetic evidence
        P-element activity
        Delta2-3 transposase
        amorphic allele - molecular evidence
        P-element activity
        amorphic allele - molecular evidence
        Delta2-3 transposase
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        ethyl methanesulfonate
        loss of function allele
        ethyl methanesulfonate
        References (21)