FB2025_01 , released February 20, 2025
Human Disease Model Report: nephrotic syndrome (postulated), GAPVD1-related
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General Information
Name
nephrotic syndrome (postulated), GAPVD1-related
FlyBase ID
FBhh0000950
Disease Ontology Term
Parent Disease
OMIM
Overview

The human gene GAPVD1 has been implicated in the development of nephrotic syndrome based on exome-sequencing analysis of two families affected by the disease; like most subtypes of nephrotic syndrome, this forms exhibits autosomal recessive inheritance. GAPVD1 encodes a protein that acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF); it is involved in regulation of vesicle-mediated transport associated with a number of specific pathways. There is a single orthologous gene in Drosophila, Dmel\Gapvd1, for which RNAi targeting constructs and alleles caused by insertional mutagenesis have been generated.

The human GAPVD1 gene has not been introduced into flies.

In the fly, nephrocytes act in a manner analogous to human podocytes: the fly nephrocyte diaphragm functions like the mammalian slit diaphragm to regulate filtration; the nephrocytes may also function in protein reabsorption [reviewed in FBrf0220711 and FBrf0235870; see also the human disease model report 'kidney disease (fly models overview)' FBhh0000738].

Knockdown of Dmel\Gapvd1 in nephrocytes, effected by RNAi, impairs the filtration function of the nephrocytes, as assayed by tracer uptake. Ectopic nephrocyte diaphragms are observed, associated with Drosophila proteins normally present on these structures, sns and kirre (Dmel\sns is one of two Drosophila orthologs of human nephrin, see FBhh0000318; Dmel\kirre is orthologous to human KIRREL genes; see FBhh0000549).

[updated Jan. 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: nephrotic syndrome
Symptoms and phenotype

The nephrotic syndrome is characterized clinically by proteinuria, hypoalbuminemia, hyperlipidemia, and edema. Kidney biopsies show nonspecific histologic changes such as minimal change, focal segmental glomerulosclerosis (FSGS), and diffuse mesangial proliferation. Approximately 20% of affected individuals have an inherited steroid-resistant form and progress to end-stage renal failure (summary by Fuchshuber et al., 1996, pubmed:8606597). [From MIM:256300, 2016.06.13]

Specific Disease Summary: nephrotic syndrome (postulated), GAPVD1-related
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information

The GAPVD1 protein acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization, and EGFR trafficking and degradation. It has GEF activity for RAB5A and GAP activity for RAS genes.

External links
Disease synonyms
SRNS
steroid-resistant nephrotic syndrome
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to one: 1 human to 1 Drosophila.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human GAPVD1 (1 Drosophila to 1 human). Dmel\Gapvd1 shares 26% identity and 42% similarity with the human gene.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (0 groups)
        Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
        Models Based on Experimental Evidence ( 2 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        References (4)