FB2025_01 , released February 20, 2025
Human Disease Model Report: cancer, epithelial, RAS models, role of autophagy
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General Information
Name
cancer, epithelial, RAS models, role of autophagy
FlyBase ID
FBhh0001033
Disease Ontology Term
Parent Disease
OMIM
Overview

The constitutively active Drosophila RAS mutation Ras85DV12 is analogous to oncogenic mutations found in human RAS proteins. Several studies in flies have addressed questions concerning the role of autophagy in RAS-driven tumorigenesis. See the human disease model report 'cancer, multiple, RAS-related' (FBhh0000474) for additional information concerning Ras85DV12 cancer models.

A genetic screen for loss-of-function mutations that enhance a hyperplastic phenotype of Ras85DV12 identified multiple genes involved in the autophagy pathway, including Atg8a (ortholog of human GABARAP and GABARAPL1) and Atg9 (ortholog of human ATG9A and ATG9B), Atg1 (ortholog of human ULK1 and ULK2). In subsequent experiments, knockdown of almost all tested genes involved in the autophagy pathway enhanced Ras85DV12-induced overgrowth, including nSyb (ortholog of human VAMP2, VAMP1, and VAMP3).

Results in flies were extended to a human system. Using available RNAseq data from The Cancer Genome Atlas, expression of autophagy genes was assessed for human pancreatic ductal adenocarcinoma (PAAD), since incidence of KRAS-activating mutations in this tumor type is very high. The analysis showed that lower expression of several core autophagy genes, including GABARAP and VAMP2, correlates with oncogenic KRAS mutations and poor prognosis in this pancreatic cancer.

In work using multiple different cancer models in flies (including RAS-driven and NOTCH-driven) to assess alterations in autophagy, different results were obtained in different systems. It was concluded that differing influences of autophagy on cell and tissue growth may depend on both oncogenic signal and cell type.

[updated May 2019 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: cancer, epithelial, RAS models, role of autophagy
OMIM report
Human gene(s) implicated
Symptoms and phenotype
Genetics
Cellular phenotype and pathology
Molecular information
External links
    Disease synonyms
    Search term: neoplastic phenotype(s)
    Ortholog Information
    Human gene(s) in FlyBase
      Other mammalian ortholog(s) used
        D. melanogaster Gene Information (5)
        Gene Snapshot
        Autophagy-related 8a (Atg8a) encodes a ubiquitin-like protein that is conjugated to phosphatidylethanolamine, and this lipid modification anchors it into the membrane of forming and completed autophagosomes. Atg8a product has roles in autophagosome formation, maintaining neuromuscular function and normal lifespan. [Date last reviewed: 2019-03-07]
        Gene Groups / Pathways
        Comments on ortholog(s)

        High-scoring ortholog of human GABARAP and GABARAPL1; multiple similar orthologs in both species.

        Orthologs and Alignments from DRSC
        DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
        Gene Snapshot
        Autophagy-related 9 (Atg9) encodes an integral membrane protein acting as a membrane carrier for forming autophagosomes. It regulates TOR and JNK signaling pathways via autophagy. [Date last reviewed: 2019-07-11]
        Molecular function (GO)
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human ATG9A and ATG9B (1 Drosophila to 2 human).

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          Autophagy-related 1 (Atg1) encodes a protein kinase that functions downstream of the product of mTor in the regulation of autophagy. [Date last reviewed: 2019-03-07]
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human ULK1 and ULK2; multiple similar orthologs in both species.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          neuronal Synaptobrevin (nSyb) encodes a SNAP receptor involved in vesicle fusion. [Date last reviewed: 2019-07-11]
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human VAMP2, VAMP1 and VAMP3; multiple similar orthologs in both species.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Gene Snapshot
          Ras oncogene at 85D (Ras85D) encodes a protein that acts downstream of several cell signals, most notably from Receptor Tyrosine Kinases, to regulate tissue growth and development. When abnormally activated it can direct developmental defects and tissue hyperplasia, mimicking aspects of human disease including Rasopathies and cancer, respectively. [Date last reviewed: 2019-03-14]
          Cellular component (GO)
          Gene Groups / Pathways
          Comments on ortholog(s)

          High-scoring ortholog of human genes KRAS, HRAS, and NRAS (many to many; multiple paralogs and orthologs in both species). Dmel\Ras85D shares 78-86% identity and 86-92% similarity with KRAS, HRAS, and NRAS; for these three human genes, Ras85D is the highest-scoring ortholog in Drosophila.

          Orthologs and Alignments from DRSC
          DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
          Other Genes Used: Viral, Bacterial, Synthetic (0)
            Summary of Physical Interactions (89 groups)
            RNA-protein
            Interacting group
            Assay
            References
            anti tag coimmunoprecipitation, quantitative reverse transcription pcr
            protein-protein
            Interacting group
            Assay
            References
            anti bait coimmunoprecipitation, western blot, pull down, autoradiography
            pull down, autoradiography
            experimental knowledge based
            pull down, anti tag western blot
            experimental knowledge based
            pull down, western blot
            anti tag coimmunoprecipitation, anti tag western blot, two hybrid
            two hybrid, anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, anti tag western blot
            pull down, molecular weight estimation by staining
            pull down, autoradiography
            pull down, autoradiography, anti tag coimmunoprecipitation, anti tag western blot
            pull down, anti tag western blot
            experimental knowledge based
            anti tag coimmunoprecipitation, anti tag western blot, pull down, autoradiography, western blot
            pull down, anti tag western blot
            pull down, autoradiography
            pull down, autoradiography
            pull down, anti tag western blot, anti tag coimmunoprecipitation
            experimental knowledge based
            pull down, anti tag western blot
            pull down, anti tag western blot, two hybrid
            anti tag coimmunoprecipitation, western blot
            pull down, anti tag western blot, two hybrid
            pull down, anti tag western blot
            pull down, autoradiography
            pull down, autoradiography
            protein-protein
            Interacting group
            Assay
            References
            anti tag coimmunoprecipitation, anti tag western blot
            experimental knowledge based
            two hybrid, anti tag coimmunoprecipitation, western blot, pull down, anti tag western blot
            proximity-dependent biotin identification, anti tag western blot
            anti tag coimmunoprecipitation, western blot
            anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, anti tag western blot, pull down, western blot
            anti tag coimmunoprecipitation, anti tag western blot
            anti bait coimmunoprecipitation, anti tag western blot, anti tag coimmunoprecipitation, western blot, pull down
            RNA-protein
            Interacting group
            Assay
            References
            anti tag coimmunoprecipitation, quantitative reverse transcription pcr
            anti tag coimmunoprecipitation, quantitative reverse transcription pcr, pull down, western blot
            protein-protein
            Interacting group
            Assay
            References
            enzymatic study, autoradiography
            pull down, autoradiography
            anti tag coimmunoprecipitation, anti tag western blot, western blot
            anti tag coimmunoprecipitation, anti tag western blot, anti bait coimmunoprecipitation, western blot
            anti tag coimmunoprecipitation, anti tag western blot
            anti bait coimmunoprecipitation, western blot, anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, anti tag western blot
            enzymatic study, autoradiography
            anti tag coimmunoprecipitation, anti tag western blot
            enzymatic study, autoradiography, pull down, western blot, anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, western blot, pull down
            pull down, autoradiography
            RNA-protein
            Interacting group
            Assay
            References
            protein-protein
            Interacting group
            Assay
            References
            anti tag coimmunoprecipitation, western blot
            anti tag coimmunoprecipitation, western blot
            experimental knowledge based, comigration in sds page, western blot
            phenotype-based detection assay, inferred by author, comigration in sds page, western blot
            experimental knowledge based
            phenotype-based detection assay, inferred by author
            phenotype-based detection assay, inferred by author
            anti bait coimmunoprecipitation, western blot, experimental knowledge based, comigration in sds page, phenotype-based detection assay, inferred by author
            protein-protein
            Interacting group
            Assay
            References
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            two hybrid, anti tag coimmunoprecipitation, autoradiography
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            gtpase assay, autoradiography
            anti tag coimmunoprecipitation, peptide massfingerprinting
            pull down, western blot, two hybrid
            anti tag coimmunoprecipitation, peptide massfingerprinting
            two hybrid, pull down, anti tag coimmunoprecipitation, anti tag western blot
            pull down, anti tag western blot
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, peptide massfingerprinting
            anti tag coimmunoprecipitation, anti tag western blot
            anti tag coimmunoprecipitation, Identification by mass spectrometry, pull down, covalent binding, western blot
            Alleles Reported to Model Human Disease (Disease Ontology) (48 alleles)
            Models Based on Experimental Evidence ( 0 )
            Allele
            Disease
            Evidence
            References
            Modifiers Based on Experimental Evidence ( 8 )
            Models Based on Experimental Evidence ( 2 )
            Allele
            Disease
            Evidence
            References
            Modifiers Based on Experimental Evidence ( 2 )
            Allele
            Disease
            Interaction
            References
            Models Based on Experimental Evidence ( 0 )
            Allele
            Disease
            Evidence
            References
            Modifiers Based on Experimental Evidence ( 11 )
            Allele
            Disease
            Interaction
            References
            Models Based on Experimental Evidence ( 0 )
            Allele
            Disease
            Evidence
            References
            Modifiers Based on Experimental Evidence ( 1 )
            Allele
            Disease
            Interaction
            References
            Models Based on Experimental Evidence ( 16 )
            Allele
            Disease
            Evidence
            References
            model of  cancer
            Modifiers Based on Experimental Evidence ( 18 )
            Allele
            Disease
            Interaction
            References
            model of  cancer
            is exacerbated by ITPUAS.F
            model of  cancer
            is ameliorated by InRGL00139
            is ameliorated by InRJF01183
            is ameliorated by InRJF01482
            is ameliorated by NetBΔ
            is ameliorated by NetBKK103672
            is ameliorated by unc-5MI04273
            is ameliorated by bskDN.UAS
            is ameliorated by bskHMS00777
            is exacerbated by hepAct.UAS
            is exacerbated by imdUAS.cGa
            is ameliorated by JraNIG.2275R
            is ameliorated by TimpUAS.cPa
            ameliorates  cancer
            model of  kidney cancer
            is ameliorated by Pka-C1B3
            is ameliorated by mTorΔP
            model of  cancer
            is exacerbated by exe1
            is exacerbated by Ptp61FΔ
            is exacerbated by M6W186stop
            is ameliorated by Ptip3804
            is exacerbated by p53UAS.cUa
            is ameliorated by Ilp8MI00727
            Alleles Representing Disease-Implicated Variants
            Genetic Tools, Stocks and Reagents
            Sources of Stocks
            Contact lab of origin for a reagent not available from a public stock center.
            Bloomington Stock Center Disease Page
            Related mammalian, viral, bacterial, or synthetic transgenes
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila transgenes
            Allele
            Transgene
            Publicly Available Stocks
            RNAi constructs available
            Allele
            Transgene
            Publicly Available Stocks
            Selected Drosophila classical alleles
            Allele
            Allele class
            Mutagen
            Publicly Available Stocks
            amorphic allele - molecular evidence
            phiC31 integrase
            P-element activity
            loss of function allele
            loss of function allele
            P-element activity
            amorphic allele - genetic evidence
            amorphic allele - molecular evidence
            ends-out gene targeting
            amorphic allele - molecular evidence
            CRISPR/Cas9
            loss of function allele
            P-element activity
            loss of function allele
            Delta2-3 transposase
            loss of function allele
            Delta2-3 transposase
            References (12)