FB2025_01 , released February 20, 2025
Human Disease Model Report: intellectual disability, X-linked 9
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General Information
Name
intellectual disability, X-linked 9
FlyBase ID
FBhh0001503
Overview

This report describes intellectual disability, X-linked 9, also referred to as intellectual developmental disorder, X-linked 9 (XLID9). This form of intellectual disability exhibits sex-linked recessive inheritance. The human gene implicated in this disease is FTSJ1, which encodes a methyltransferase that modifies nucleotides in the anticodon loop of specific tRNAs. There are two orthologous genes in Drosophila, Trm7-32 and Trm7-34; multiple genetic reagents have been generated for both fly genes, including loss-of-function mutations and RNAi-targeting constructs.

The human FTSJ1 gene has not been introduced into flies.

The two Drosophila genes, Trm7-32 and Trm7-34, divide the functions of human FTSJ1, which methylates both positions (positions 32 and 34 of the tRNA anticodon loop). To model this disease double homozygous mutant animals were used: a synaptic overgrowth phenotype is observed in the neuromuscular junctions of mutant larvae; long-term memory but not the short-term is significantly altered in mutant adults.

[updated Mar. 2023 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: intellectual disability, X-linked, nonsyndromic
Symptoms and phenotype

Intellectual disability is characterized by impairments in intellectual functioning and adaptive behavior; symptoms must be present before a child becomes 18 years old (http://medical-dictionary.thefreedictionary.com/mental+retardation; 2016.01.19).

Intellectual disability can be subdivided into syndromic forms, characterized by cognitive impairment accompanied by dysmorphic features, malformations or neurological abnormalities, and nonsyndromic forms, characterized by cognitive impairment without additional features (Basel-Vanagaite, 2008; DOI: 10.1002/9780470015902.a0021454).

Specific Disease Summary: intellectual disability, X-linked 9
OMIM report

[INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED 9; XLID9](https://omim.org/entry/309549)

Human gene(s) implicated

[FTSJ RNA 2-PRIME-O-METHYLTRANSFERASE 1; FTSJ1](https://omim.org/entry/300499)

Symptoms and phenotype

XLID9 patients exhibit moderate to severe intellectual disability. [from MIM:309549; 2023.03.14]

Genetics

X-linked intellectual developmental disorder-9 (XLID9) is caused by mutation in the FTSJ1 gene. [from MIM:309549; 2023.03.14]

Cellular phenotype and pathology
Molecular information

FTSJ1 encodes a methyltransferase that methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.

External links
Disease synonyms
intellectual developmental disorder, X-linked 9
mental retardation, X-linked 9
mental retardation, X-linked 44
MRX9
MRX44
XLID9
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    One to many: 1 human gene to 2 Drosophila genes.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (2)
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human FTSJ1 (2 Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Cellular component (GO)
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate to high-scoring ortholog of human FTSJ1 (2 Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (1 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, anti tag western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (2 alleles)
        Models Based on Experimental Evidence ( 1 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Models Based on Experimental Evidence ( 1 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        CRISPR/Cas9
        References (4)