FB2025_01 , released February 20, 2025
Human Disease Model Report: epilepsy, early-onset, 3, with or without developmental delay
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General Information
Name
epilepsy, early-onset, 3, with or without developmental delay
FlyBase ID
FBhh0001536
Disease Ontology Term
Parent Disease
Overview

This report describes epilepsy, early-onset, 3, with or without developmental delay, a subtype of early-onset epilepsy, characterized by various types of seizures beginning in the first months or years of life. The human gene implicated is ATP6V0C, which encodes the membrane-bound subunit C of the eukaryotic multisubunit vacuolar ATPase (V-ATPase) enzyme complex. There are two high-scoring fly orthologs, Dmel\Vha16-1 and Dmel\Vha16-3, as well as several moderately scoring fly orthologs. for which classical alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated for Dmel\Vha16-1, and RNAi targeting constructs have been generated for Dmel\Vha16-3.

Human ATP6V0C has not been introduced into flies.

Pan-neuronally targeted RNAi knockdown of Dmel\Vha16-3 results in increased duration of seizure-like behaviour after electroshock in wandering third instar larvae. Pretreatment of larvae with established antiepileptic drugs, including levetiracetam and topiramate, resulted in significant reductions in recovery time.

[updated Sept. 2023 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: epilepsy, early-onset
Symptoms and phenotype
Specific Disease Summary: epilepsy, early-onset, 3, with or without developmental delay
OMIM report

[EPILEPSY, EARLY-ONSET, 3, WITH OR WITHOUT DEVELOPMENTAL DELAY; EPEO3](https://omim.org/entry/620465)

Human gene(s) implicated

[ATPase, H+ TRANSPORTING, LYSOSOMAL, 16-KD, V0 SUBUNIT C; ATP6V0C](https://omim.org/entry/108745)

Symptoms and phenotype

Early-onset epilepsy-3 with or without developmental delay (EPEO3) is an autosomal dominant neurologic disorder characterized by the onset of various types of seizures in the first months or years of life. Many patients present with febrile seizures and later develop afebrile seizures. The severity and disease course is highly variable: some affected individuals have global developmental delay or regression with impaired intellectual development, poor or absent speech, and motor delay, whereas others have normal psychomotor development. More severely affected individuals often show additional features, including hypotonia, gait ataxia, nonspecific dysmorphic features, behavioral abnormalities, and variable anomalies on brain imaging (Mattison et al., 2023; pmid:36074901; FBrf0256332; Zhao et al., 2023; pmid:37161035). [from MIM:620465; 2023.09.08]

Genetics

EPEO3 is caused by heterozygous mutation in the ATP6V0C gene on chromosome 16p13. [from MIM:620465; 2023.09.08]

Cellular phenotype and pathology
Molecular information

The ATP6V0C gene encodes membrane-bound subunit C of the eukaryotic multisubunit vacuolar ATPase (V-ATPase) enzyme complex that functions in an ATP-dependent manner to pump protons across membranes and acidify various intracellular organelles, including lysosomes and secretory vesicles. V-ATPase also plays a role in neurotransmitter loading and release in synaptic vesicles. ATP6V0C, along with ATP6V0B, forms the intramembrane c-ring that facilitates the movement of protons across the membrane (summary by Ittiwut et al., 2021; pmid:33190975; and Mattison et al., 2023; ; pmid:36074901; FBrf0256332). [from MIM:108745; 2023.09.08]

External links
Disease synonyms
EPEO3
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    Comments on ortholog(s)

    One to many (1 human to many Drosophila); ATP6V0C has two high-scoring Drosophila orthologs, Vha16-1 and Vha16-3; and three moderate-scoring Drosophila orthologs, Vha16-2, Vha16-4 and Vha16-5.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (5)
      Gene Snapshot
      Vacuolar H[+] ATPase 16kD subunit 1 (Vha16-1) encodes the proteolipid component of V-ATPase, which is a multi-functional channel protein. It contributes to vesicle-membrane fusion, hydrophilic molecule transport and intercellular communication. [Date last reviewed: 2019-09-26]
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human ATP6V0C (many Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Snapshot
      Vacuolar H[+] ATPase 16kD subunit 2 (Vha16-2) encodes the main subunit of the membrane-embedded V0 sector of the vacuolar-ATPase, which is responsible for acidification of the endo-lysosomal lumen and other cellular compartment. As part of the V-ATPase, the product of Vha16-2 supports membrane trafficking, protein degradation and multiple associated signaling pathways, such as mTor, Wnt and Notch. [Date last reviewed: 2019-09-26]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human ATP6V0C (many Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Groups / Pathways
      Comments on ortholog(s)

      High-scoring ortholog of human ATP6V0C (many Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human ATP6V0C (many Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human ATP6V0C (many Drosophila to 1 human).

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (1 groups)
        RNA-protein
        Interacting group
        Assay
        References
        pull down, anti tag western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
        Models Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 2 )
        Allele
        Disease
        Interaction
        References
        Models Based on Experimental Evidence ( 1 )
        Allele
        Disease
        Evidence
        References
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        References (4)