FB2025_01 , released February 20, 2025
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000032637
Interaction Network
Interactions Browser links
Pop2 network
twin network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0179476-1.CH.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

CCR4

neutral component
twin 

CCR4

neutral component
twin 

CCR4

neutral component
Pop2 

CAF

neutral component
Pop2 

CAF

neutral component
Pop2 

CAF

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

twin and Pop2 copurify in DEAE fractionation and subsequent gel filtration as part of the CCR4-NOT complex.

twin and Pop2 containing fractions contain poly(A)-specific 3\' exonuclease activity.

Source was cytoplasmic extract of S2 cell line; proteins produced from endogenous genes.

Cytoplasmic extract was first DEAE fractionated, then separated by gel filtration.

FBrf0211004-11.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

Ccr4

bait

FLAG tag

Pop2 

Caf1

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from endogenous gene.

FBrf0218395-5018.DPiM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 
unspecified role
twin 
unspecified role
twin 
unspecified role
Pop2 
unspecified role
Pop2 
unspecified role
Pop2 
unspecified role
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

HGScore = 224.75733

FBrf0220772-3.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

CCR4

bait

GFP tag

Pop2 

POP2

prey

HA tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

Catalytically inactive Pop2 is able to bind twin.

FBrf0221179-1.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

CCR4

bait

GFP tag

twin 
Pop2 

POP2

prey

HA tag

Pop2 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
twin 
leucine-rich repeat domain
sufficient binding region
aa 1-168

\'LRR\'

Pop2 
interaction interface
mutation decreasing interaction
aa 80-84

C80E, L84E double mutant

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0221179-2.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Pop2 

POP2

bait

GFP tag

twin 

CCR4

prey

HA tag

twin 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
twin 
leucine-rich repeat domain
mutation decreasing interaction
aa 42-44

L42E, I44E double mutant

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

Catalytically inactive twin mutant proteins are able to bind Pop2.

FBrf0223419-10.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

CCR4

bait

HA tag

Pop2 

CAF1

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Experiments were done in bam[Δ86] mutant ovaries, which contain only undifferentiated pre-cystoblasts.

Source was adult female ovary of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

The twin-Not1 interaction is not affected by RNase treatment.

FBrf0230176-7.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

Twin

bait

FLAG tag

Pop2 

Pop2

prey

HA tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

FBrf0230176-8.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

Twin

bait

FLAG tag

twin 
Pop2 

Pop2

prey

HA tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
twin 
N-terminal region residues 76-81
mutation disrupting interaction
aa 76-81

L76A, L79A and L81A (or L76G, L79G and L81G)

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was adult female ovaries of transgenic fly line; bait produced from tagged transgenic construct; prey produced from tagged transgenic construct.

FBrf0257826-13.CH.MW
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
twin 

CCR4

neutral component
twin 

CCR4

neutral component
twin 

CCR4

neutral component
Pop2 

Caf1

neutral component
Pop2 

Caf1

neutral component
Pop2 

Caf1

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced as a recombinant fusion proteins in baculovirus and insect cell system.

Hexameric CCR4-NOT-mini complex captured as 15 pairwise interactions.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (8)