A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

CTCF, Rbp1-like Interaction report

General Information
Interaction Type
physical association
Interacting Genes
CTCF, Rbp1-like
FlyBase ID
FBig0000033845
Interaction Network
Interactions Browser links
CTCF network

Rbp1-like network
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Reference
(Mintseris et al., 2009.11.23)
Description
physical association
Assay
anti tag coimmunoprecipitation, peptide massfingerprinting
Collection
DPiM-1
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
CTCF protein
CTCF-PA
bait
Rbp1-like protein
Rbp1-like-PA
prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
GH14774
DPiM_GH14774
 
reagent
Bait tag fusion clone
CTCF protein
SNVGLQNHINTHMGNKPHK
 
identified peptide
N=1
CTCF protein
HMNLVHNEEYQPPEPR
 
identified peptide
N=4
CTCF protein
DEDPEDLQTFLNNFHK
 
identified peptide
N=1
CTCF protein
KNPVIPKPEPMDLER
 
identified peptide
N=2
CTCF protein
AKQSAMPPPPALVVK
 
identified peptide
N=1
CTCF protein
ATTSKPPPEPK
 
identified peptide
N=2
CTCF protein
FTQSNSLK
 
identified peptide
N=1
CTCF protein
KDEDPEDLQTFLNNFHK
 
identified peptide
N=2
CTCF protein
DGTVITLIK
 
identified peptide
N=1
CTCF protein
HEPSANSK
 
identified peptide
N=1
CTCF protein
TKKDEDPEDLQTFLNNFHK
 
identified peptide
N=1
CTCF protein
LAASEKQPMIINQR
 
identified peptide
N=2
CTCF protein
SINLRPAK
 
identified peptide
N=1
CTCF protein
HMETHDDSANAR
 
identified peptide
N=2
CTCF protein
EIEGNSDEK
 
identified peptide
N=2
CTCF protein
DVDFVLSNK
 
identified peptide
N=1
CTCF protein
QSAMPPPPALVVK
 
identified peptide
N=5
CTCF protein
RHMVIHTGEK
 
identified peptide
N=1
Rbp1-like protein
VYVGNLGSSASK
 
identified peptide
N=1
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction
 
SAMPLE ID:041410-FH5281
hide References ( 0 )
 
No references are recorded in FlyBase at present.