A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

HDAC6, SmD2 Interaction report

General Information
Interaction Type
physical association
Interacting Genes
HDAC6, SmD2
FlyBase ID
FBig0000063418
Interaction Network
Interactions Browser links
HDAC6 network

SmD2 network
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Reference
(Mintseris et al., 2009.11.23)
Description
physical association
Assay
anti tag coimmunoprecipitation, peptide massfingerprinting
Collection
DPiM-1
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
HDAC6 protein
HDAC6-PA
bait
SmD2 protein
snRNP2-PA
prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
LD43531
DPiM_LD43531
 
reagent
Bait tag fusion clone
HDAC6 protein
MHDDYGLLK
 
identified peptide
N=5
HDAC6 protein
TGTTGAATAAGGTGSSSGSISGGFNAADPR
 
identified peptide
N=6
HDAC6 protein
AQNGMAIIRPPGHHAMK
 
identified peptide
N=2
HDAC6 protein
SLEFVGR
 
identified peptide
N=2
HDAC6 protein
GPDGNFDVVGK
 
identified peptide
N=11
HDAC6 protein
SLLGDPCPPLVETVPLPR
 
identified peptide
N=1
HDAC6 protein
FFYNDPR
 
identified peptide
N=2
HDAC6 protein
LYAYLNPLHEDK
 
identified peptide
N=2
HDAC6 protein
SKTGTTGAATAAGGTGSSSGSISGGFNAADPR
 
identified peptide
N=1
HDAC6 protein
TLSDYLAENK
 
identified peptide
N=1
HDAC6 protein
VLIVDWDVHHGNGTQHIFESNPK
 
identified peptide
N=3
HDAC6 protein
VTAEGYGMLTHWLSALASGR
 
identified peptide
N=5
HDAC6 protein
LHTEEHFER
 
identified peptide
N=2
HDAC6 protein
HWIGGPPPMDRYPTR
 
identified peptide
N=1
HDAC6 protein
TGTTGAATAAGGTGSSSGSISGGFNAADPRK
 
identified peptide
N=1
HDAC6 protein
ILIIDYDVHHGQGTQR
 
identified peptide
N=2
HDAC6 protein
YEHGSFFPK
 
identified peptide
N=4
HDAC6 protein
GFNVNIPWNKK
 
identified peptide
N=2
HDAC6 protein
RLPRDPVVGENNNEDFLTASLR
 
identified peptide
N=1
HDAC6 protein
CLQLQQTYDCVELQDR
 
identified peptide
N=1
HDAC6 protein
VVYFSIHR
 
identified peptide
N=1
HDAC6 protein
EALEQSEMFAVYPLK
 
identified peptide
N=2
HDAC6 protein
DPVVGENNNEDFLTASLR
 
identified peptide
N=4
HDAC6 protein
GFNVNIPWNK
 
identified peptide
N=1
HDAC6 protein
HWIGGPPPMDR
 
identified peptide
N=5
HDAC6 protein
DTAIPLPPEK
 
identified peptide
N=4
HDAC6 protein
ELHDAAGIYNSVYLHPR
 
identified peptide
N=4
HDAC6 protein
DKEEDLHTVLR
 
identified peptide
N=1
SmD2 protein
QEEEEFNTGPLSVLTQSVK
 
identified peptide
N=1
SmD2 protein
SELTPEELAR
 
identified peptide
N=1
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction
 
SAMPLE ID:FH4297_092309
hide References ( 0 )
 
No references are recorded in FlyBase at present.