A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Atg4, Lst8 Interaction report

General Information
Interaction Type
physical association
Interacting Genes
Atg4, Lst8
FlyBase ID
FBig0000088565
Interaction Network
Interactions Browser links
Atg4 network

Lst8 network
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hide Reported Interactions
hide070810-FH1209_1_21
Reference
(Mintseris et al., 2009.11.23)
Description
physical association
Assay
anti tag coimmunoprecipitation, peptide massfingerprinting
Collection
DPiM-1
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Atg4 protein
Atg4-PA
bait
Lst8 protein
CG3004-PA
prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
LD26292
DPiM_LD26292
 
reagent
Bait tag fusion clone
Atg4 protein
NSFYSIHQIAQMGESQNK
 
identified peptide
N=3
Atg4 protein
CLELDSSCGMIGGRPNQALYFLGYVDDEVLYLDPHTTQR
 
identified peptide
N=1
Atg4 protein
MLVGLSDQLAR
 
identified peptide
N=1
Atg4 protein
KYNAIQELELIR
 
identified peptide
N=2
Atg4 protein
AVGEWLGPNTVAQILK
 
identified peptide
N=1
Atg4 protein
YNAIQELELIR
 
identified peptide
N=1
Atg4 protein
TAAAEQDYDETYHQK
 
identified peptide
N=1
Atg4 protein
LGITDINPLYVPALKR
 
identified peptide
N=1
Atg4 protein
LNFSAMDPSLAVCFLCK
 
identified peptide
N=1
Atg4 protein
NTDVWVLGK
 
identified peptide
N=1
Atg4 protein
EGGSWKPLLLIIPLR
 
identified peptide
N=3
Atg4 protein
RNTDVWVLGK
 
identified peptide
N=1
Atg4 protein
LGITDINPLYVPALK
 
identified peptide
N=3
Atg4 protein
TSDSFESLLTK
 
identified peptide
N=1
Atg4 protein
HGFSPLGEVQLTTDK
 
identified peptide
N=1
Atg4 protein
IMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRR
 
identified peptide
N=1
Lst8 protein
IVPEVDASIQDVAISPDGR
 
identified peptide
N=1
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction
 
SAMPLE ID:070810-FH1209
hideFBrf0218395-976.DPiM
Reference
(Guruharsha et al., 2011)
Description
physical association
Assay
experimental knowledge based
Collection
DPiM-2
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Lst8 protein
unspecified role
Atg4 protein
unspecified role
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction
 
HGScore = 158.20833
hide References ( 0 )
 
No references are recorded in FlyBase at present.