FB2025_01 , released February 20, 2025
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000098135
Interaction Network
Interactions Browser links
PlexA network
Sema1b network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0105958-2.ELISA
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Plex A

bait

D-Sema 1b

prey

AP tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Binding requires divalent cations (Ca[++] or Mg[++]).

Interaction in vitro; bait produced as a recombinant fusion protein in COS cell system; prey produced as a recombinant fusion protein in COS cell system.

Transmembrane bait protein was obtained from crude membrane preparations of transfected cells. Prey protein was obtained from cell culture supernatants of transfected cells. Proteins were mixed in vitro.

FBrf0241779-2.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

bait

Fc tag

Sema-1b

prey

alkaline phosphatase tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait derived from conditioned medium of transfected S2 cell line; prey derived from conditioned medium of transfected S2 cell line.

Positive control.

FBrf0241779-5.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Sema-1b

bait

Fc tag

PlexA

prey

alkaline phosphatase tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait derived from conditioned medium of transfected S2 cell line; prey derived from conditioned medium of transfected S2 cell line.

Positive control.

FBrf0243223-5.MT
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

bait

mVenus tag

Sema1b

prey

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 37-659

37D-659S

interaction domain
sufficient binding region
aa 28-730

28Q-730T

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in HEK293 cells; prey produced as a recombinant fusion protein in HEK293 cells.

FBrf0246052-1.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

neutral component

His tag

PlexA

neutral component

His tag

PlexA

neutral component

His tag

Sema1b

neutral component

His tag

Sema1b

neutral component

His tag

Sema1b

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 28-730
interaction domain
sufficient binding region
aa 37-602
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

PlexA-Sema1b forms two different complexes in crystallo - a 1:1 complex and a 2:2 complex with distinct interaction modes.

Interaction in vitro; proteins purified as recombinant fusion proteins from conditioned medium of transfected HEK 293T cells.

FBrf0246052-2.MST
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

neutral component

mVenus tag

PlexA

neutral component

mVenus tag

PlexA

neutral component

mVenus tag

Sema1b

neutral component

Sema1b

neutral component

Sema1b

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 28-730
interaction domain
sufficient binding region
aa 37-659
interaction domain
mutation disrupting interaction
aa 203,219,223,350-367

Mutation of both PlexA-Sema1b binding interfaces F203E, Q219R and K223E as well as mutating aa 350-367 to Ala required to disrupt the PlexA-Sema1b interaction.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins purified as a recombinant fusion proteins from conditioned medium of transfected HEK 293T cells.

FBrf0246052-3.CH.LS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

neutral component

His tag

PlexA

neutral component

His tag

PlexA

neutral component

His tag

Sema1b

neutral component

His tag

Sema1b

neutral component

His tag

Sema1b

neutral component

His tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 28-730
interaction domain
sufficient binding region
aa 37-602
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins purified as a recombinant fusion proteins from conditioned medium of transfected HEK 293T cells.

FBrf0246052-4.FRET.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

PlexA

fluorescence donor

mClover tag

PlexA

fluorescence donor

mClover tag

PlexA

fluorescence donor

mClover tag

Sema1b

fluorescence acceptor

mRuby2 tag

Sema1b

fluorescence acceptor

mRuby2 tag

Sema1b

fluorescence acceptor

mRuby2 tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
interaction domain
sufficient binding region
aa 28-1311
interaction domain
sufficient binding region
aa 37-686
interaction domain
mutation disrupting interaction
aa 203,219,223,350-367

Mutation of both PlexA-Sema1b binding interfaces F203E, Q219R and K223E as well as mutating aa 350-367 to Ala required to disrupt the PlexA-Sema1b interaction.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was transfected COS-7 cells; fluorescence donor produced from tagged transfected construct; fluorescence acceptor produced from tagged transfected construct.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (4)