General Information
Name
Insulator_Class_I.mE01
Species
D. melanogaster
Result type
FlyBase ID
FBlc0000058
Project
Data Provider
Title
Insulators (type I) identified by ChIP-chip of Cp190, BEAF-32 and CTCF in embryos.
Status
Current
Accessions
Biosample Source
Overview
Sex
Other tissues studied
Cell component
Cell line
Key genes
Methods
Sample preparation
Biosamples analyzed by this result (5)
Biosample
Type
Title
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
D. melanogaster, iso-1 strain, embryo (0-12 hr AEL), source for ChIP.
Data Analyzed
Assay methods
Key genes
(bait_protein)
Protocol
Mode of Assay
Raw Data Analyzed (5)
Assay / Reagent collection
Type
Title
ChIP-chip of BEAF-32 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip of Cp190 in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip of mod(mdg4) in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip of CTCF in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
ChIP-chip of CTCF in D. melanogaster, iso-1 strain, embryo (0-12 hr AEL).
Processed Data Analyzed (0)
Result
Type
Title
Analysis
Methods
Reference Genome
Reference Annotation
Data analysis
Insulator binding data was processed with Model based Analysis Tiling-arrays (MAT) software (Johnson et al., 2006, Proc Natl Acad Sci USA 103:12457-12462 ). We ran paired MAT analysis with MaxGap of 500, MinProbe of 10, and a Bandwidth of 250. We report here the peaks found by MAT at 1% FDR. Class I insulator elements were computed as binding sites at 1% FDR for at least 2 components among CP190, BEAF32 and CTCF, with overlap by less than 250bp between their peak center (mid-peak) location.
Comments
Associated Data
Size
Associated features
4,771 insulator(s)
Files
Additional Information
Synonyms and Secondary IDs (4)
Reported As
Symbol Synonym
Insulator_Class_I.mE0
Insulator_Class_I.mE01
Name Synonyms
Insulators (type I) identified by ChIP-chip of Cp190, BEAF-32 and CTCF in embryos.
Secondary FlyBase IDs
    References (5)