Dataset mE_mRNA_em4-6hr_junctions

General Information
Name	mE_mRNA_em4-6hr_junctions	Species	D. melanogaster
Dataset type	RNA-Seq transcriptome junctions	FlyBase ID	FBlc0000125
Source & Content
Consists of	cDNA short sequencing reads from high-throughput sequencing, junctions only. (Graveley et al., 2010.03.15)
Created by
Available from
Strain	iso-1 (Graveley et al., 2010.03.15)
Stage & tissue
Stage Tissue/Position (including subcellular localization) Reference embryonic stage 9 -- 11 organism (Graveley et al., 2010.03.15) Comment:4-6 hr
Cell Line
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Description & Members
Description	Short sequencing reads of cDNA prepared from polyadenylated RNA isolated from embryos at stage 9-11 (4-6 hr). RNA junctions (corresponding to introns) identified and characterized (presented in GBrowse and in RNA junction reports). (Graveley et al., 2010.03.15)
Parent collections	modENCODE_mRNA-Seq_U_junctions
Component collection(s)
Number in collection
Comment on number in collection
Members
Experimental protocol
Vector
Sample preparation	See report for modENCODE_mRNA-Seq_U. (Graveley et al., 2010.03.15)
Collection preparation	See report for modENCODE_mRNA-Seq_U. (Graveley et al., 2010.03.15)
Mode of assay	See report for modENCODE_mRNA-Seq_U. (Graveley et al., 2010.03.15)
Assay platform	See report for modENCODE_mRNA-Seq_U. (Graveley et al., 2010.03.15)
Data analysis	See report for modENCODE_mRNA-Seq_U. (Graveley et al., 2010.03.15)
Additional data
	More information is available under: modENCODE dataset description: modENCODE_2900
Associated files
Additional sites
Synonyms & Secondary IDs
Reported As
Symbol Synonym	BS46 em4-6hr (Graveley et al., 2010.03.15, Graveley, 2011.1.5, FBrf0212803) Embryo 4-6h mE_mRNA_em4-6hr_junctions modENCODE_2900 (Graveley et al., 2010.03.15)
Secondary FlyBase IDs

References ( 3 )
Personal communication to FlyBase	Graveley, 2011.1.5, modENCODE RNA-Seq junction data modENCODE RNA-Seq junction data [FBrf0212682] Graveley et al., 2010.03.15, The D. melanogaster transcriptome: modENCODE RNA-Seq data The D. melanogaster transcriptome: modENCODE RNA-Seq data [FBrf0210195] modENCODE RNA-Seq junction data [FBrf0212803]