The related GFF3 file in Data S7 of the modENCODE integrative fly paper (FBrf0213603
) corresponds to the union of modENCODE_902, modENCODE_2570, modENCODE_2578, modENCODE_2626 and modENCODE_2637. For the modENCODE_2570 and modENCODE_2578 ChIP data sets, an older peak calling analysis was used; the peak calls used here differ from the updated modENCODE versions, though the underlying raw data are the same.
This data set was one of 41 TF data sets used by the modENCODE consortium in an integrative "HOT spot analysis" (see Parent Collection FBlc0000258
for more details).