The related GFF3 file in Data S7 of the modENCODE integrative fly paper (FBrf0213603) corresponds to modENCODE_2572. The peak calls used here derive from an older analysis and differ from the updated modENCODE version, though the underlying raw data are the same.
This data set was one of 41 TF data sets used by the modENCODE consortium in an integrative "HOT spot analysis" (see Parent Collection FBlc0000258 for more details).