FB2019_05, released Oct 15, 2019

Result: mE1_TFBS_disco

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General Information
Name
mE1_TFBS_disco
Species
D. melanogaster
Result type
binding site identification
FlyBase ID
FBlc0000293
Project
Data Provider
Title
disco binding sites (peak calls) identified by ChIP-chip in embryos.
Status
Current
Accessions
    Biosample Source
    Overview
    Strain
    iso-1
    (Negre et al., 2011)
    Stage
    pre-blastoderm stage
    (Negre et al., 2011)
    blastoderm stage
    (Negre et al., 2011)
    gastrula stage
    (Negre et al., 2011)
    early extended germ band stage
    (Negre et al., 2011)
    late extended germ band stage
    (Negre et al., 2011)
    Sex
    Tissue isolated
    organism
    (Negre et al., 2011)
    Other tissues studied
    Cell component
    Cell line
    Key genes
    Methods
    Sample preparation
    Biosamples analyzed by this result (1)
    Biosample
    Type
    Title
    BS_mE2572
    whole organism
    D. melanogaster, iso-1 strain, embryo (0-8 hr AEL), source for ChIP.
    Data Analyzed
    Assay
    ChIP-chip
    (Negre et al., 2011)
    Assay methods
    Key genes
    (bait_protein)
    Protocol
    Mode of Assay
    Raw Data Analyzed (1)
    Assay / Reagent collection
    Type
    Title
    ChIP-chip_mE2572_disco_E1-12
    ChIP-chip
    ChIP-chip of disco in D. melanogaster, iso-1 strain, embryo (0-8 hr AEL).
    Processed Data Analyzed (0)
    Result
    Type
    Title
    Analysis
    Methods
    Reference Genome
    Reference Annotation
    Data analysis
    Comments
    The related GFF3 file in Data S7 of the modENCODE integrative fly paper (FBrf0213603) corresponds to modENCODE_2572. The peak calls used here derive from an older analysis and differ from the updated modENCODE version, though the underlying raw data are the same.
    (Ma, 2011.6.8)
    This data set was one of 41 TF data sets used by the modENCODE consortium in an integrative "HOT spot analysis" (see Parent Collection FBlc0000258 for more details).
    (Ma, 2011.6.8)
    Associated Data
    Size
    Associated features
    2,628 TF_binding_site(s)
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    Files
    Additional Information
    Synonyms and Secondary IDs (4)
    Reported As
    Symbol Synonym
    E0-8h_disco.gff
    (Ma, 2011.6.8, The modENCODE Consortium, 2010)
    disco TFBS
    (Negre et al., 2011)
    mE1_TFBS_disco
    (Schroeder, 2014.6.12)
    Name Synonyms
    disco binding sites (peak calls) identified by ChIP-chip in embryos.
    (Nègre et al., 2011)
    Secondary FlyBase IDs
      References (6)