Dataset mE2_34_mRNA_expression_cluster_04

General Information
Name	mE2_34_mRNA_expression_cluster_04	Species	D. melanogaster
Dataset type	gene expression cluster	FlyBase ID	FBlc0000363
Source & Content
Consists of	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010)
Created by
Available from
Strain
Stage & tissue

Cell Line
Recent Updates
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FB2013_03
FB2013_02
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Description & Members
Description	Gene expression level across development was determined from RNA-Seq coverage data. Genes were clustered into groups with similar expression dynamics. This is one of 34 distinct clusters that were identified. (The modENCODE Consortium, 2010)
Parent collections	mE2_34_mRNA_expression_clusters
Component collection(s)
Number in collection
Comment on number in collection
Members	ade3 Ady43A Ance-3 Ance-4 AnxB10 AttA AttB AttC b Cat Cct2 CecC CG10126 CG10131 CG10140 CG10182 CG10467 CG10505 CG10799 CG10962 CG11089 CG11162 CG11192 CG1139 CG11400 CG11425 CG11459 CG11550 CG11668 CG11737 CG11741 CG11835 CG11880 CG12001 CG12016 CG12118 CG12119 CG12224 CG12338 CG12344 CG12780 CG12824 CG13012 CG13026 CG13073 CG13086 CG13117 CG13177 CG13215 CG13283 CG13360 CG13458 CG13488 CG13565 CG13607 CG13623 CG13658 CG13905 CG14245 CG14526 CG14661 CG14662 CG14695 CG14757 CG14957 CG14963 CG14990 CG15046 CG15068 CG15155 CG15170 CG15201 CG15210 CG15293 CG15343 CG15353 CG15369 CG15385 CG15412 CG15414 CG15528 CG15531 CG15550 CG15553 CG15772 CG15773 CG15784 CG15820 CG15930 CG16704 CG16836 CG16926 CG16995 CG17026 CG17108 CG17360 CG17364 CG17477 CG17574 CG17739 CG17928 CG18031 CG18067 CG18107 CG18179 CG18268 CG1827 CG18317 CG18563 CG1887 CG1998 CG2061 CG2070 CG2082 CG2444 CG2709 CG30008 CG30016 CG30026 CG30046 CG30090 CG3011 CG30148 CG30187 CG30197 CG30334 CG30345 CG30424 CG3091 CG31075 CG31089 CG31091 CG31102 CG31157 CG31370 CG31373 CG31380 CG31445 CG31469 CG31636 CG31704 CG31778 CG31826 CG31904 CG31976 CG32112 CG32115 CG32368 CG3251 CG32573 CG32698 CG32971 CG33054 CG3308 CG33120 CG33225 CG33346 CG33460 CG33465 CG33470 CG33510 CG33926 CG3394 CG3397 CG34120 CG34166 CG34203 CG34227 CG34236 CG34312 CG34330 CG34423 CG34436 CG34452 CG34454 CG34456 CG3568 CG3841 CG3940 CG4000 CG4020 CG42269 CG42369 CG42370 CG4250 CG42502 CG42524 CG4259 CG4325 CG4496 CG4630 CG4716 CG4757 CG4860 CG4950 CG4995 CG5167 CG5361 CG5377 CG5555 CG5612 CG5697 CG5758 CG5867 CG5909 CG6012 CG6067 CG6083 CG6115 CG6163 CG6357 CG6432 CG6553 CG6639 CG6660 CG6749 CG6788 CG6870 CG7194 CG7214 CG7220 CG7342 CG7365 CG7368 CG7382 CG7386 CG7402 CG7497 CG7607 CG7778 CG7816 CG8012 CG8216 CG8358 CG8369 CG8549 CG8550 CG8586 CG8646 CG8738 CG9003 CG9312 CG9458 CG9497 CG9507 CG9577 CG9616 CG9766 CG9812 CG9836 CG9928 CHKov2 CHMP2B Cht4 Clk Cpr47Ec Cpr47Ee CR10102 CR12842 CR31953 CR33013 CREG Cyp12b2 Cyp12d1-d Cyp12d1-p Cyp311a1 Cyp4d20 Cyp4d8 Cyp4e3 Cyp4g1 Cyp6d2 Cyp6g1 Cyp9b1 Cyp9h1 Damm Dhpr Dip-C DJ-1α DnaJ-60 Drs Drsl5 Dsk dsx e eag eater Ef1α100E Eip71CD Eip93F Est-6 Fbp1 Fbp2 Fer1HCH Fer2LCH Fs Gbp gl GNBP1 GNBP2 GNBP3 HDAC6 Herp Ilp3 Ilp8 IM14 IM2 IM23 IM4 jim Kif3C l(1)G0469 lectin-24Db lectin-28C lectin-33A Lectin-galC1 Lerp Letm1 Lsd-1 Lsp1α Lsp1β Lsp1γ Lsp2 LysD LysX Mal-A7 mamo Mec2 mfrn mthl2 mthl3 mthl4 Mtk MtnB MtnC Muc68E Mur29B NaPi-T NLaz noe Npc2f Npc2h Nplp4 Oatp58Da Oatp58Db p38c Paip2 park Pcd Pdfr PGRP-SA PGRP-SB1 PGRP-SC2 PGRP-SD Pink1 Pino Pis Ppat-Dpck psh Ptp52F pug Rab9D Reg-2 regucalcin rn Sclp Sirt4 Sirup skpB Sp212 Sp7 Spat spirit Spn42Dd Spn47C Spn88Eb sro sxe2 Syp Takl2 Tango9 Taz Trissin Tsf1 Tsp42Ek Ucp4A Ugt86Di Uro Vago vir-1 yellow-e yellow-f βNACtes3 βNACtes6
Experimental protocol
Vector
Sample preparation	See report for modENCODE_mRNA-Seq_U. (The modENCODE Consortium, 2010)
Collection preparation	See report for modENCODE_mRNA-Seq_U. (The modENCODE Consortium, 2010)
Mode of assay	See report for modENCODE_mRNA-Seq_U. (The modENCODE Consortium, 2010)
Assay platform	See report for modENCODE_mRNA-Seq_U. (The modENCODE Consortium, 2010)
Data analysis	See report for mE2_34_mRNA_expression_clusters. (The modENCODE Consortium, 2010)
Additional data

Associated files
Additional sites
Comments
	GO term enrichment and motif enrichment of this cluster is presented in fig. S15 (FBrf0213506). (The modENCODE Consortium, 2010)
Synonyms & Secondary IDs
Reported As
Symbol Synonym	cluster4 (The modENCODE Consortium, 2010, The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_04
Secondary FlyBase IDs

References ( 2 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] The modENCODE Consortium, 2010, Science 330(6012): Supporting Online Material for Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE. [FBrf0213506]