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General Information
Name
NIH_mRNA_Dpse_gonads_carcasses
Species
D. pseudoobscura pseudoobscura
Project type
FlyBase ID
FBlc0000599
Parent Project
    Data Provider
    Title
    Transcriptomes of D. pseudoobscura adult gonadal tissue, RNA-Seq.
    Overview
    Description

    RNA profile of Drosophila pseudoobscura adult gonads or carcasses, umbrella record.

    Reagent type
    Key genes
    GO term(s)
    SO term(s)
    Details
    Sample preparation
    Protocol
    Mode of Assay
    Data analysis

    Only Illumina GAII data was used. Raw reads were trimmed to 75 nt before mapping (shorter reads were removed) and mapped using TopHat (v2.0.8b) with parameters: -g 1 -r 150 --solexa1.3-quals (except for data from head samples where parameters were -g 1 -r 150).

    Comments
    Files
    Additional Information

    [Transcriptional Profiling of additional Drosophila species](http://intermine.modencode.org/release-33/experiment.do?experiment=Transcriptional+Profiling+of+additional+Drosophila+species+with+RNA-Seq)

    Synonyms and Secondary IDs (4)
    Reported As
    Symbol Synonym
    NIH_mRNA_Dpse_gonads_carcasses
    RNA-Seq of Gonads and Carcasses in D. simulans and D. pseudoobscura
    Name Synonyms
    Transcriptomes of D. pseudoobscura adult gonadal tissue, RNA-Seq.
    Secondary FlyBase IDs
      References (2)