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General Information
Name
ChIP-chip_pan_E6-8h_organism
Species
D. melanogaster
Result type
FlyBase ID
FBlc0000687
Project
Data Provider
[Furlong lab, EMBL](http://furlonglab.embl.de)
Title
ChIP-chip peak calls for pan from D. melanogaster, embyro (6-8 hr AEL).
Status
Current
Accessions
    Biosample Source
    Overview
    Sex
    Tissue isolated
    Other tissues studied
    Cell component
    Cell line
    Key genes
    Methods
    Sample preparation
    Two independent biological replicates used.
    Biosamples analyzed by this result (1)
    Biosample
    Type
    Title
    D. melanogaster, embyro (6-8 hr AEL), source for chromatin.
    Data Analyzed
    Assay methods
    Key genes
    (bait_protein)
    Protocol
    Chromatin was immunoprecipitated using rabbit anti-pan antiserum (FBrf0192411).
    Chromatin was prepared from formaldehyde-fixed embryos as previously described (FBrf0202481).
    Mode of Assay
    Immunoprecipitated chromatin was analyzed by Affymetrix GeneChip Drosophila Tiling 1.0R array
    Raw Data Analyzed (1)
    Assay / Reagent collection
    Type
    Title
    ChIP-chip of pan from D. melanogaster, embyro (6-8 hr AEL).
    Processed Data Analyzed (0)
    Result
    Type
    Title
    Analysis
    Methods
    Reference Genome
    Reference Annotation
    Data analysis
    Peaks were called with TileMap software (v1) after quantile normalization. For each enriched region, probe intensity peaks were identified as extrema on a smoothed curve of the log2-ratio signal. Finally, 200 bp regions centered on identified extremas were defined. Peak calls were lifted over from Dmel_Release_5 to Dmel_Release_6 using the NCBI Genome Remapping tool.
    Comments
    Associated Data
    Size
    Associated features
    2,475 TF_binding_site(s)
    Additional Information
    Synonyms and Secondary IDs (4)
    Reported As
    Symbol Synonym
    ChIP-chip_pan_E6-8h_organism
    dTCF Binding Peaks at 6-8h AEL
    dTCF bound regions
    Name Synonyms
    ChIP-chip peak calls for pan from D. melanogaster, embyro (6-8 hr AEL).
    Secondary FlyBase IDs
      References (2)