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General Information
Name
Lai_shortRNA-seq_profiles_tissues
Species
D. melanogaster
Project type
FlyBase ID
FBlc0000790
Parent Project
Data Provider
[Lai lab](https://www.mskcc.org/research-areas/labs/eric-lai)
Title
Lai_shortRNA-Seq_profiles
Accessions
    Overview
    Description

    An umbrella record for Lai lab shortRNA-seq coverage profiles consolidated from shortRNA-seq assays of various tissues.

    Biosample type
    Assay type
    Reagent type
    Key genes
    GO term(s)
    Details
    Sample preparation
    Protocol
    Mode of Assay
    Data analysis

    Data from short RNA-Seq assays from multiple, independent studies have been analyzed in parallel and consolidated into data for 5 tissues. To generate bigWig short RNA transcriptome profiles, reads for these assays were mapped to D. melanogaster Release 6 (FlyBase r6.09). Multiple libraries were consolidated per condition by summing the number of reads per genomic position and normalizing this count by dividing by the total number of reads summed over all libraries for this condition and multiplying by 1,000,000. Basically, this normalization is equivalent to reads per million (RPM), but on a per nucleotide basis. For reads mapping to multiple locations, the coverage values were equally weighted across all mapping sites.

    Comments
    Additional Information
    Synonyms and Secondary IDs (3)
    Reported As
    Symbol Synonym
    Lai_shortRNA-seq_profiles_tissues
    Name Synonyms
    Lai_shortRNA-Seq_profiles
    Secondary FlyBase IDs
      References (1)