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General Information
Name
Furlong_BiTS-ChIP-Seq
Species
D. melanogaster
Project type
FlyBase ID
FBlc0003341
Parent Project
    Data Provider
    Title
    ChIP-Seq profiling of histone modifications in purified embryonic mesodermal cells.
    Accessions
    Overview
    Description
    Project attributes
    Reagent type
    Key genes
    (bait_protein)
    GO term(s)
    Details
    Sample preparation
    Protocol

    Chromatin was prepared from formaldehyde-fixed embryos as previously described (FBrf0202481).

    Mode of Assay

    Chromatin immunoprecipitated DNA was analyzed by next generation sequencing.

    Data analysis

    Reads were aligned using bowtie. Input DNA or His3 ChIP DNA was used as control data. Peaks were called with MACS 1.3.7.1. Peak calls were lifted over from Dmel_Release_5 to Dmel_Release_6 using the NCBI Genome Remapping tool.

    Comments
    Additional Information
    Synonyms and Secondary IDs (2)
    Reported As
    Symbol Synonym
    Furlong_BiTS-ChIP-Seq
    Name Synonyms
    ChIP-Seq profiling of histone modifications in purified embryonic mesodermal cells.
    Secondary FlyBase IDs
      References (3)