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FB2025_01
,
released February 20, 2025
Tools
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Query by symbols/IDs
Batch Download
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Overview
RNA-Seq Similarity
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RNA-Seq By Region
JBrowse
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Fast-Track Your Paper
Submit Personal Communication
Feedback on Gene Snapshots
Downloads
Overview
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FTP Site:
Releases (FTP)
Genomes (FTP)
Links
External Resources
Model Organisms (MODs)
Alliance of Genome Resources
BeeBase
DictyBase
EcoCyc
Gramene
MGI
PomBase
Pseudobase
RGD
SGD
TAIR
VectorBase
WormBase
Xenbase
ZFIN
Stock Collections
Bloomington Drosophila Stock Center (BDSC)
FlyORF
Korea Drosophila Resource Center (KDRC)
Kyoto Stock Center
NIG-FLY
Tsinghua Fly Center (THFC)
Vienna Drosophila Resource Center (VDRC)
BDGP
DGRC
DRSC/TRiP
DIS by issue
FlyBook
FlyExpress
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New to Flies?
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to FlyBase: APIs, etc.
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FB2025_01
,
released February 20, 2025
Project: Stau_RIP_interaction_map
J2G
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General Information
Name
Stau_RIP_interaction_map
Species
D. melanogaster
Project type
interactome
FlyBase ID
FBlc0003354
Parent Project
Data Provider
Title
Interaction map generated by purification of stau, with identificaiton of copurifying RNA transcripts by microarray.
Accessions
PRJNA186029
GSE43418
Overview
Description
Project attributes
Biosample type
whole organism
(
Laver et al., 2013
)
Assay type
RIP-Seq
(
Laver et al., 2013
)
RNA tiling array
(
Laver et al., 2013
)
Reagent type
Result type
RNA-protein interaction
(
Laver et al., 2013
)
Key genes
stau
(transgene_used)
Export to HitList
stau
(bait_protein)
Export to HitList
GO term(s)
SO term(s)
Details
Sample preparation
Flies were maintained at 25oC and a 0-3 hour embryo collection was collected.
(
Laver et al., 2013
)
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Biosamples generated (2)
Export to HitList
Biosample
Type
Title
BS_E1-6_stau-GFP_RIP
whole organism
D. melanogaster, stau-GFP line in stau mutant background, embryo (0-3 hr), source of extract for stau-GFP RIP.
BS_E1-6_stau_RIP
whole organism
D. melanogaster, wild-type, embryo (0-3hr), source of extract for stau RIP.
Raw data generated (6)
Export to HitList
Assay
Type
Title
input_RNA_RIP_E1-6_stau
RNA tiling array
Input RNA for stau RNA immunoprecipitation.
input_RNA_RIP_E1-6_stau-GFP
RNA tiling array
Input RNA for stau-GFP RNA immunoprecipitation.
mock_RIP_E1-6_stau
RIP-Seq
Mock immunoprecipitation for stau RNA immunoprecipitation.
mock_RIP_E1-6_stau-GFP
RIP-Seq
Mock immunoprecipitation for stau-GFP RNA immunoprecipitation.
RIP_E1-6_stau
RIP-Seq
Immunoprecipitation of RNAs (RIP) bound to stau in early embryos.
RIP_E1-6_stau-GFP
RIP-Seq
Immunoprecipitation of RNAs (RIP) bound to GFP-tagged stau in early embryos.
Processed data (3)
Export to HitList
Result
Type
Title
Stau_RIP
RNA-protein interaction
High-confidence RNA-protein interactions identified in stau and stau-GFP RIP from early embryos.
Stau_RPI_1
RNA-protein interaction
RNA transcripts identified in stau RIP from early embryos, >2-fold enrichment.
Stau_RPI_2
RNA-protein interaction
RNA transcripts identified in stau-GFP RIP from early embryos, >2-fold enrichment.
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
Stau_RIP_interaction_map
Name Synonyms
Interaction map generated by purification of stau, with identificaiton of copurifying RNA transcripts by microarray.
(
Laver et al., 2013
)
Secondary FlyBase IDs
References (2)
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General Information
Overview
Details
Related Datasets
Synonyms and Secondary IDs
References