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FB2025_01
,
released February 20, 2025
Tools
Tools Overview & Help
Query by symbols/IDs
Batch Download
Sequence Downloader
ID Validator
Feature Mapper
Search/Browse Portals
QuickSearch
Vocabularies
QueryBuilder
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BLAST
JBrowse
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Coordinates Converter
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modENCODE RNA-Seq
Overview
RNA-Seq Similarity
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RNA-Seq By Region
JBrowse
Submit Data
Fast-Track Your Paper
Submit Personal Communication
Feedback on Gene Snapshots
Downloads
Overview
Current Release
Archived Data
Map Conversion
FTP Site:
Releases (FTP)
Genomes (FTP)
Links
External Resources
Model Organisms (MODs)
Alliance of Genome Resources
BeeBase
DictyBase
EcoCyc
Gramene
MGI
PomBase
Pseudobase
RGD
SGD
TAIR
VectorBase
WormBase
Xenbase
ZFIN
Stock Collections
Bloomington Drosophila Stock Center (BDSC)
FlyORF
Korea Drosophila Resource Center (KDRC)
Kyoto Stock Center
NIG-FLY
Tsinghua Fly Center (THFC)
Vienna Drosophila Resource Center (VDRC)
BDGP
DGRC
DRSC/TRiP
DIS by issue
FlyBook
FlyExpress
Interactive Fly
Virtual Fly Brain
FlyCyc
Community
Fast-Track Your Paper
FlyBase Community
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FB2025_01
,
released February 20, 2025
Project: FBGSE22069
J2G
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General Information
Name
FBGSE22069
Species
D. melanogaster
Project type
genome binding
FlyBase ID
FBlc0003365
Parent Project
Data Provider
Title
Protein profiling reveals five principal chromatin types in Drosophila cells.
Accessions
SRP002674
PRJNA128945
Overview
Description
Project attributes
Biosample type
immortalized cell line
(
Filion et al., 2010
,
van Bemmel et al., 2010
)
Assay type
RNA-Seq
(
Filion et al., 2010
)
DamID-chip
(
Filion et al., 2010
,
van Bemmel et al., 2010
)
ChIP-chip
(
Filion et al., 2010
)
Reagent type
Result type
binding site identification
(
Filion et al., 2010
)
Key genes
Showing 50 / 54 records. Use
Export to HitList
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D1
su(Hw)
Df31
Cdk7
PCNA
SuUR
bcd
CG42724
EcR
Sin3A
BEAF-32
Sirt1
ash2
pho
Su(var)2-10
Polr2F
asf1
Max
Mnt
phol
Jra
His3
Pcl
Su(var)3-9
Sce
aurB
Pc
Dsp1
HP6
eff
HDAC1
His1
prod
CTCF
Lam
Act5C
dwg
Su(var)205
E(z)
Su(var)3-7
gro
lolal
Caf1-55
MED31
MRG15
Gcn5
Lhr
CtBP
brm
HP1c
(transgene_used)
Export to HitList
Showing 50 / 54 records. Use
Export to HitList
to see all
D1
su(Hw)
Df31
Cdk7
PCNA
SuUR
bcd
CG42724
EcR
Sin3A
BEAF-32
Sirt1
ash2
pho
Su(var)2-10
Polr2F
asf1
Max
Mnt
phol
Jra
His3
Pcl
Su(var)3-9
Sce
aurB
Pc
Dsp1
HP6
eff
HDAC1
His1
prod
CTCF
Lam
Act5C
dwg
Su(var)205
E(z)
Su(var)3-7
gro
lolal
Caf1-55
MED31
MRG15
Gcn5
Lhr
CtBP
brm
HP1c
(bait_protein)
Export to HitList
GO term(s)
chromatin organization
(
Filion et al., 2010
)
SO term(s)
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Biosamples generated (57)
Export to HitList
Biosample
Type
Title
BS_GSE22069_Kc167_Act5C_DamID
immortalized cell line
D. melanogaster, Kc167 cell line, source for Act5C DamID.
BS_GSE22069_Kc167_asf1_DamID
immortalized cell line
D. melanogaster, Kc167 cell line, source for asf1 DamID.
BS_GSE22069_Kc167_ash2_DamID
immortalized cell line
D. melanogaster, Kc167 cell line, source for ash2 DamID.
BS_GSE22069_Kc167_aurB_DamID
immortalized cell line
D. melanogaster, Kc167 cell line, source for aurB DamID.
BS_GSE22069_Kc167_H3K27me3_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for H3K27me3 ChIP.
BS_GSE22069_Kc167_H3K4me2_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for H3K4me2 ChIP.
BS_GSE22069_Kc167_H3K79me2_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for H3K79me2 ChIP.
BS_GSE22069_Kc167_H3K9me2_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for H3K9me2 ChIP.
BS_GSE22069_Kc167_His1_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for His1 ChIP.
BS_GSE22069_Kc167_His3_ChIP
immortalized cell line
D. melanogaster, Kc167 cell line, source for His3 ChIP.
Showing 10 / 57 records. Use
Export to HitList
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Biosamples reanalyzed (5)
Export to HitList
Result
Type
Title
BS_GSE20313_Kc167_BEAF-32-Dam
immortalized cell line
D. melanogaster, Kc167 cell line, source for BEAF-32 DamID.
BS_GSE20313_Kc167_CTCF-Dam
immortalized cell line
D. melanogaster, Kc167 cell line, source for CTCF DamID.
BS_GSE20313_Kc167_dwg-Dam
immortalized cell line
D. melanogaster, Kc167 cell line, source for dwg DamID.
BS_GSE20313_Kc167_su(Hw)-Dam
immortalized cell line
D. melanogaster, Kc167 cell line, source for su(Hw) DamID.
BS_GSE20313_Kc167_Trl-Dam
immortalized cell line
D. melanogaster, Kc167 cell line, source for Trl DamID.
Raw data generated (57)
Export to HitList
Assay
Type
Title
ChIP-chip_GSE22069_H3K27me3_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, H3K27me3.
ChIP-chip_GSE22069_H3K4me2_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, H3K4me2.
ChIP-chip_GSE22069_H3K79me2_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, H3K79me2.
ChIP-chip_GSE22069_H3K9me2_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, H3K9me2.
ChIP-chip_GSE22069_His1_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, His1.
ChIP-chip_GSE22069_His3_Kc167
ChIP-chip
ChIP-chip of D. melanogaster, Kc167 cell line, His3.
DamID-chip_GSE22069_Act5C_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, Act5C-Dam.
DamID-chip_GSE22069_asf1_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, asf1-Dam.
DamID-chip_GSE22069_ash2_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, ash2-Dam.
DamID-chip_GSE22069_aurB_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, aurB-Dam.
Showing 10 / 57 records. Use
Export to HitList
above to see all
Raw data reanalyzed (5)
Export to HitList
Assay
Type
Title
DamID-chip_GSE20313_BEAF-32_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, BEAF-32 DamID
DamID-chip_GSE20313_CTCF_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, CTCF DamID
DamID-chip_GSE20313_dwg_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, dwg DamID
DamID-chip_GSE20313_su(Hw)_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, su(Hw) DamID
DamID-chip_GSE20313_Trl_Kc167
DamID-chip
DamID-chip of D. melanogaster, Kc167 cell line, Trl DamID
Processed data (1)
Export to HitList
Result
Type
Title
Chromatin_types_NKI.Kc167
binding site identification
5-state chromatin model derived from DamID-chip analysis of 53 chromatin factors
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
FBGSE22069
Name Synonyms
Protein profiling reveals five principal chromatin types in Drosophila cells.
(
Filion et al., 2010
)
Secondary FlyBase IDs
References (2)
Report Sections
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General Information
Overview
Details
Related Datasets
Synonyms and Secondary IDs
References